LOC110491043


Basic Information

Item Value
gene id LOC110491043
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 33863087 ~ 33870055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564419.2
ATGCTGGTGTGCGTCAACGCAGACAGGACATGTGAGGGCAAAGCCCAAGGTTTGTTAGGGGAGGGCCAGTACCTGTGCCTAGGAAAGGGTGGGGTGGGGTCAGCCGTGGGTGCTGTCACCAAGATTAGATCAAGATGGAAATTGAAACAATTTAACAATAGGCTACGGCTGCATTGGAGAAAAGAGATCAAACTCCTGTCAGACCTTGCATACTGTGGTTTAACCACATTCTCAGGGTACCAGATGTAGGGTGAAGAGTATGTCAATATCATCCAGGTGGACCCCACCCTGCGCGGGGCACTGTCCCGTGCCAGACAAGGAGCCCAGGTGTATCTCCACAGCCTGTTTCCCTACCTGCTGGAAAAGTTGCTGGTGTGCCTGGAGAATGAGCTTGGAGACAAGGGAAAAGCCAGGGAGGGGGAGGCCGGAGAGCAGAAGTGGCCAGTCCCTGGAGCCTGGATGAGAGCCTGGGTCCAGAGGGTGGTGGGGCAGCTCACGGAGCCCCAGAGGAGGATGTGCATGCTGGTCTTGTTGGCCCTCCAGCCGGCACTCTCCATCATCCACCGGTTGCATGTGGCCCTGTTTTACATCAGCGGGGCCTTCTACCACCTGGGGAACAAGACGGCCAGCATCCGCTATCTTTGGGTGTGTGACGGGGGTTGACAAGGCCATCCGGAGCAGCTACAGGCTCCTGGGCGTGGTCTCCCTGCTGCAGCTGGCCCTCACTGTGGCCCTGCAGCTCAACAAACTCCGACAGAGAGCCCAGCAGTAGTGGAGACAACACAGGAACCTGCCTTCCAGGTCTCCAGTCTGTAGAAGAGCCCAACTCACCCTGTGCATCTCGCTGTATCCtgtgaatagaggagaggaggcactCAACCTCTACCCCATGTGGCCACTTGTTCTGCTGGGAGTGCATCACAGAGTGGTGTAACACCAAGACAGTGCCCTTTGTGTCGTGAGAAGTTCCAGCCTCCTCGACTGGTCTACCTGAGAAACTACTCGTTTCCAGAACCACTAGCGTGCCTTTTGTTACATGGCTTCACTTTCTAAATGACTGGATCGCCACATTGGACTGTTGAATCGTTAAACACACCTTTGTCTTTCTTAGAGTTTAGCTATCTCTGTTCAAGTTACTTCCAAATAGCATCTCACTTCAGAGAATGCCTAGAAATCTTATTTTGGGACCTTGATTCAGATATTGCTGAAAACTCTGTCAAGTTATCTCCAGTGTGAAACAAAATGGATAAAGCGTTTCAAATTGTTTTTGTAATATTTCAGAATATTATTGTGAAGCTCTGTCCTCAGCTCTTTCATTCTGTATCAGGGATACACACTGGAATCATTTGTGTATATTTTTCGTTCTTTAATATActtgttttatatattttatggGCATGCATAATGCAGTGTACTATATTAAGCAATCATTCATTTTGAAATGGTTTGCATAtgaatcatgtttggattgtatCAGTCTAATTTATCTGAATTAAAAcgtaataaaatataaatcaacTATGCAACTTTTGTAATAAACAACTGTGCAATta
>TU1561592
AAGAAAGAAACCTACTGTGCTACTACTCTTTGACAAAGGGGAGATTGATTCAAATTCATTTGAATCTTTTTCTGCTCGTACCGTCATGAGCTGTCACCAAGATTAGATCAAGATGGAAATTGAAACAATTTAACAATAGGCTACGGCTGCATTGGAGAAAAGAGATCAAACTCCTGTCAGACCTTGCATACTGTGGTTTAACCACATTCTCAGGGTACCAGATGTAGGGTGAAGAGTATGTCAATATCATCCAGGTGGACCCCACCCTGCGCGGGGGCACTGTCCCGTGCCAGACAAGGAGCCCAGGTGTATCTCCACAGCCTGTTTCCCTACCTGCTGGAAAAGTTGCTGGTGTGCCTGGAGAATGAGCTTGGAGACAAGGGAGGAAAGCCAGGGAGGGGGAGGCCGGAGAGCAGAAGTGGCCAGTCCCTGGAGCCTGGATGAGAGCCTGGGTCCAGAGGGTGGTGGGGCAGCTCACGGAGCCCCAGAGGAGGATGTGCATGCTGGTCTTGTTGGCCCTCCAGCCGGCACTCTCCATCATCCACCGGTTGCATGTGGCCCTGTTTTACATCAGCGGGGCCTTCTACCACCTGGGGAACAAGACGGCCAGCATCCGCTATCTTTGGGTGTGTGACGGGGGTTGACAAGGCCATCCGGAGCAGCTACAGGCTCCTGGGCGTGGTCTCCCTGCTGCAGCTGGCCCTCACTGTGGCCCTGCAGCTCAACAAACTCCGACAGAGAGCCCAGCAGTAGTGGAGACAACACAGGAACCTGCCTTCCAGGTCTCCAGTCTGTAGAAGAGCCCAACTCACCCTGTGCATCTCGCTGTATCCtgtgaatagaggagaggaggcactCAACCTCTACCCCATGTGGCCACTTGTTCTGCTGGGAGTGCATCACAGAGTGGTGTAACACCAAGACAGTGCCCTTTGTGTCGTGAGAAGTTCCAGCCTCCTCGACTGGTCTACCTGAGAAACTACTCGTTTCCAGAACCACTAGCGTGCCTTTTGTTACATGGCTTCACTTTCTAAATGACTGGATCGCCACATTGGACTGTTGAATCGTTAAACACACCTTTGTCTTTCTTAGAGTTTAGCTATCTCTGTTCAAGT
>TU1561593
TAGTGCACACCATAGAAAACATTTTTGCAATGGAAAATAAAAGCTATTTATTTTTACAAGTTCAGGCAATCCCTCAAGCGcatttgttttctgttgcaaaatgttttggtactgtgtGGCCTAATGATTATGACCCATGTTACTAGTGTATGCTTCGGCATGCTATTTCTCACCATTCTTTCTTTCCCCGGACGGTTAGCTTTGGGTGTGTGACGGGGGTTGACAAGGCCATCCGGAGCAGCTACAGGCTCCTGGGCGTGGTCTCCCTGCTGCAGCTGGCCCTCACTGTGGCCCTGCAGCTCAACAAACTCCGACAGAGAGCCCAGCAGTAGTGGAGACAACACAGGAACCTGCCTTCCAGGTCTCCAGTCTGTAGAAGAGCCCAACTCACCCTGTGCATCTCGCTGTATCCtgtgaatagaggagaggaggcactCAACCTCTACCCCATGTGGCCACTTGTTCTGCTGGGAGTGCATCACAGAGTGGTGTAACACCAAGACAGTGCCCTTTGTGTCGTGAGAAGTTCCAGCCTCCTCGACTGGTCTACCTGAGAAACTACTCGTTTCCAGAACCACTAGCGTGCCTTTTGTTACATGGCTTCACTTTCTAAATGACTGGATCGCCACATTGGACTGTTGAATCGTTAAACACACCTTTGTCTTTCTTAGAGTTTAGCTATCTCTGTTCAAGT
>TU1561594
AATGGCCataatgaagagctcagtggctttcaatgtggcactgtcaaaaggatgccacctttccaacaagtcagttcatcaaatgtctgccctattagagctgccccggtcaactgtaagtgctgttggaAACTTAACAATAGCTCAGCTGCGAATTgataggctacacaagctcacagaacggtacCAAAAATCATCTGTCACATcacatatacttttggtcatgtagtgtatttataTTATTCTTACAGTAGCtactctttttttccccctttactCATACAGCTGCATTGGAGAAAAGAGATCAAACTCCTGTCAGACCTTGCATACTGTGGTTTAACCACATTCTCAGGGTACCAGATGTAGGGTGAAGAGTATGTCAATATCATCCAGGTGGACCCCACCCTGCGCGGGGGCACTGTCCCGTGCCAGACAAGGAGCCCAGGTGTATCTCCACAGCCTGTTTCCCTACCTGCTGGAAAAGTTGCTGGTGTGCCTGGAGAATGAGCTTGGAGACAAGGGAGGAAAGCCAGGGAGGGGGAGGCCGGAGAGCAGAAGTGGCCAGTCCCTGGAGCCTGGATGAGAGCCTGGGTCCAGAGGGTGGTGGGGCAGCTCACGGAGCCCCAGAGGAGGATGTGCATGCTGGTCTTGTTGGCCCTCCAGCCGGCACTCTCCATCATCCACCGGTTGCATGTGGCCCTGTTTTACATCAGCGGGGCCTTCTACCACCTGGGGAACAAGACGGCCAGCATCCGCTATCTTTGGGTGTGTGACGGGGGTTGACAAGGCCATCCGGAGCAGCTACAGGCTCCTGGGCGTGGTCTCCCTGCTGCAGCTGGCCCTCACTGTGGCCCTGCAGCTCAACAAACTCCGACAGAGAGCCCAGCAGTAGTGGAGACAACACAGGAACCTGCCTTCCAGGTCTCCAGTCTGTAGAAGAGCCCAACTCACCCTGTGCATCTCGCTGTATCCtgtgaatagaggagaggaggcactCAACCTCTACCCCATGTGGCCACTTGTTCTGCTGGGAGTGCATCACAGAGTGGTGTAACACCAAGACAGTGCCCTTTGTGTCGTGAGAAGTTCCAGCCTCCTCGACTGGTCTACCTGAGAAACTACTCGTTTCCAGAACCACTAGCGTGCCTTTTGTTACATGGCTTCACTTTCTAAATGACTGGATCGCCACATTGGACTGTTGAATCGTTAAACACACCTTTGTCTTTCTTAGAGTTTAGCTATCTCTGTTCAAGT

Function

NR:

description
LOW QUALITY PROTEIN: peroxisome biogenesis factor 10

GO:

id name namespace
GO:0016558 protein import into peroxisome matrix biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564419.2 False 1553 mRNA 0.48 9 33863087 33870055
TU1561592 False 1115 TUCP 0.53 6 33863506 33869898
TU1561593 False 694 lncRNA 0.49 3 33863506 33864668
TU1561594 True 1254 TUCP 0.52 5 33863506 33866557

Neighbor

gene id symbol gene type direction distance location
LOC110491843 LOC106567362 coding downstream 434 33772325 ~ 33862653 (-)
clcn6 clcn6 coding downstream 181844 33652657 ~ 33681243 (-)
LOC118939523 NA coding downstream 331740 33484120 ~ 33531347 (-)
LOC110491041 LOC106572132 coding downstream 379251 33419422 ~ 33483836 (-)
LOC118939522 LOC106572132 coding downstream 446592 33371376 ~ 33416495 (-)
skia ski coding upstream 477874 34347929 ~ 34429211 (-)
LOC110491852 prkcz coding upstream 584012 34454067 ~ 34596158 (-)
LOC110491856 LOC106566938 coding upstream 900771 34770826 ~ 34796155 (-)
LOC110491859 LOC106566941 coding upstream 976429 34846484 ~ 34880904 (-)
LOC110491858 LOC106566942 coding upstream 1063834 34933889 ~ 34953455 (-)
G1366765 NA non-coding downstream 96984 33765868 ~ 33766103 (-)
G1366762 NA non-coding downstream 99336 33763457 ~ 33763751 (-)
G1366761 NA non-coding downstream 101491 33761267 ~ 33761596 (-)
G1366760 NA non-coding downstream 102814 33760039 ~ 33760273 (-)
G1366759 NA non-coding downstream 103180 33759473 ~ 33759907 (-)
G1366861 NA non-coding upstream 45202 33915257 ~ 33915565 (-)
G1366863 NA non-coding upstream 46996 33917051 ~ 33917355 (-)
G1366867 NA non-coding upstream 52857 33922912 ~ 33923113 (-)
G1366880 NA non-coding upstream 70387 33940442 ~ 33940747 (-)
G1366882 NA non-coding upstream 73179 33943234 ~ 33943449 (-)
G1366756 NA other downstream 111680 33747400 ~ 33751407 (-)
G1366703 NA other downstream 178614 33684011 ~ 33684473 (-)
G1365099 NA other downstream 1227576 32634465 ~ 32635511 (-)
G1364348 NA other downstream 1843589 32018794 ~ 32019498 (-)
G1364105 NA other downstream 1976975 31885749 ~ 31886112 (-)
LOC110491862 tnfrsf6b other upstream 1208046 35077807 ~ 35079706 (-)
G1369101 NA other upstream 1877921 35747976 ~ 35780436 (-)
G1369107 NA other upstream 1878802 35748857 ~ 35752941 (-)
LOC110491868 LOC106566949 other upstream 1933013 35474174 ~ 35994010 (-)
G1370601 LOC106566960 other upstream 3407590 37277645 ~ 37278677 (-)

Expression


Co-expression Network