LOC110491859 (LOC106566941)


Basic Information

Item Value
gene id LOC110491859
gene name LOC106566941
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 34846484 ~ 34880904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565673.2
AATCACGTGACATGTTCTTGTTTTGCGCATCCCGTTCCCCGCACAGCCCGTGGACTGAACGACTCCTCTCAATATCGCCGTGAAAATGGGGACACCTGAGAACCTGTCTGGCGGTACAGGTGGGCGAAGGGAGCCCCTCAGATTTGACCAGGATGCGTCCGCGACCGCCGTGGACATGGACACGGCAATTGTGCTTCTCGGAGCCGGCGTGACAGCTATCACACACCCGCTGCTGTACGTCAAACTGCTCattcagATTGGACATGAGCCCCTCACCCCAACTGTCGGAACCACCATGTTTGGGAGGAAAGTGTTGTACCTACCTGGATTCTTCTCCTATGCACAGCACATCGTAAGGGTTGATGGAAAGATGGGACTCTTCCGAGGTCTATCCCCTCGTATAATGTCCAGTGCCATCTCCACCATGGTCCGGAGTAAAGTCAAACAGGCCGTCCCAGCAGAGCAGGCGGAGCATGTATCGAACAGAGACGACTTGAAGACCTCCCTCAGGAAAGTGATGAAAGAGACCTCACATGAGATGGTCATCCAGTGCCTGTCCAGAATAGCCACTCATCCCTTCCATGTGATCTCCGTGCGATGCATGGCTCAGTTTGTGGGGAGAGAAGTCAAGTACAGGGGGCTGTTCAGCAGCATCACCAAAATCTTCAACGATGAGGGCATTGGGGGATTCTTTGTGGGGGTTGTGCCCCATATCCTGGGTGAGGTCATCTTTCTGTGGTGTTGTAACCTCCTGGCCCACTTCATCAACACCTACGCCGTGGACGACAATTTCAGCCAAGCCCCAGCAGTGAGAAGCTACACCAAGTTTGTGATGGGGATTGCAGTGAGTGTGTTGACGTACCCATTTATGCTGGTGGCAGACCTAATGGCAGTTAACAACTGTGGGTTGGTGGCTGGTCTTCCCCCTAACTCTCCCATCTTTAAGTCCTGGGTCCACTGTTGGGCTCATCTGAGCCACGAGGGCCATCTCTTCCGAGGATCCAGCTTCTTTTATCGCCGTGTGCCTGTGACAGGGATGGCTTTGACTGAGGAGTGATAAAATCAACCGCCGCACAACCTGTGCCACTGTTCTCCTTCCTAACCGGTACCTCAGTGAGACCAATGTACAACCACCCCCTCACCTTAAACCTCCCATTGGATAAAGCCGGAGCAGCATGTTATCAATGGGCTAGGTGTTTTACTGAAGTAAAGTTACTTACAAGTTAAGAGTTTTGTTAATCTTGTTTTTAATCTAAATAATAATGTAGCCACTCAAAAGCAAGAGGTCGGAGGAGTGAGACTTAATGTGAACAAATCAAAATTATATCCAATATATTTTGTCTTGGTTGAATGCTGAGGGTATAATCTCCTTTTACTATACCAGCAAAGTTgcactatttttttatttatttgaatctATGACTTAATTTTGCCATATTTATAGGCCACAGTTTAATTAAGTTCTATGTAGGCTTTAAAATTGGATAGTTGATTTCCATCTAATGAAAAAATGccaaatgtttatttttcaaaGGGTCTCACCTAGTAGTAGCATGATATATGGTTGCATTCGAAAGTGCTCATTTGCCTCCTATCAGAAGTGCTTTACCCAATAATTATACCTATTCACAAACACCATAAGCCCACAAAAACTGGAGTGCTctctagtgatgcaccgatattacttttttggccgataccgatatccaatattttccttgccaaaaaaaccgATACCGATATTTTAAGAAattagcggccttttaagcacTCTAGTACAggtaaatagttaacacacacacatggacgcggcggtctaaggcactgcatctcagtgaaagAGGCGTCACTATGGTCCCTGATtcgaatctaggctgtatcacatctggccgtgattgggagtcccatagggcggcgcacaattggcccagtgtcgcccgggctgtcattgtaaataagaatttgttcttaattgacttgcctagttaact
>XM_036946752.1
GGAATCACGTGACATGTTCTTGTTTTGCGCATCCCGTTCCCCGCACAGCCCGTGGACTGAACGACTCCTCTCAATATCGCCGTGAAAATGGGGACACCTGAGAACCTGTCTGGCGGTACAGGTGGGCGAAGGGAGCCCCTCAGATTTGACCAGGATGCGTCCGCGACCGCCGTGGACATGGACACGGCAATTGTGCTTCTCGGAGCCGGCGTGACAGCTATCACACACCCGCTGCTGTACGTCAAACTGCTCattcagATTGGACATGAGCCCCTCACCCCAACTGTCGGAACCACCATGTTTGGGAGGAAAGTGTTGTACCTACCTGGATTCTTCTCCTATGCACAGCACATCGTAAGGGTTGATGGAAAGATGGGACTCTTCCGAGGTCTATCCCCTCGTATAATGTCCAGTGCCATCTCCACCATGGTCCGGAGTAAAGTCAAACAGGCCGTCCCAGCAGAGCAGGCGGAGCATGTATCGAACAGAGACGACTTGAAGACCTCCCTCAGGAAAGTGATGAAAGAGACCTCACATGAGATGGTCATCCAGTGCCTGTCCAGAATAGCCACTCATCCCTTCCATGTGATCTCCGTGCGATGCATGGCTCAGTTTGTGGGGAGAGAAGTCAAGTACAGGGGGCTGTTCAGCAGCATCACCAAAATCTTCAACGATGAGGGCATTGGGGGATTCTTTGTGGGGGTTGTGCCCCATATCCTGGGTGAGGTCATCTTTCTGTGGTGTTGTAACCTCCTGGCCCACTTCATCAACACCTACGCCGTGGACGACAATGTAAGCACGTTCAGCCAAGCCCCAGCAGTGAGAAGCTACACCAAGTTTGTGATGGGGATTGCAGTGAGTGTGTTGACGTACCCATTTATGCTGGTGGCAGACCTAATGGCAGTTAACAACTGTGGGTTGGTGGCTGGTCTTCCCCCTAACTCTCCCATCTTTAAGTCCTGGGTCCACTGTTGGGCTCATCTGAGCCACGAGGGCCATCTCTTCCGAGGATCCAGCTTCTTTTATCGCCGTGTGCCTGTGACAGGGATGGCTTTGACTGAGGAGTGATAAAATCAACCGCCGCACAACCTGTGCCACTGTTCTCCTTCCTAACCGGTACCTCAGTGAGACCAATGTACAACCACCCCCTCACCTTAAACCTCCCATTGGATAAAGCCGGAGCAGCATGTTATCAATGGGCTAGGTGTTTTACTGAAGTAAAGTTACTTACAAGTTAAGAGTTTTGTTAATCTTGTTTTTAATCTAAATAATAATGTAGCCACTCAAAAGCAAGAGGTCGGAGGAGTGAGACTTAATGTGAACAAATCAAAATTATATCCAATATATTTTGTCTTGGTTGAATGCTGAGGGTATAATCTCCTTTTACTATACCAGCAAAGTTgcactatttttttatttatttgaatctATGACTTAATTTTGCCATATTTATAGGCCACAGTTTAATTAAGTTCTATGTAGGCTTTAAAATTGGATAGTTGATTTCCATCTAATGAAAAAATGccaaatgtttatttttcaaaGGGTCTCACCTAGTAGTAGCATGATATATGGTTGCATTCGAAAGTGCTCATTTGCCTCCTATCAGAAGTGCTTTACCCAATAATTATACCTATTCACAAACACCATAAGCCCACAAAAACTGGAGTGCTctctagtgatgcaccgatattacttttttggccgataccgatatccaatattttccttgccaaaaaaaccgATACCGATATTTTAAGAAattagcggccttttaagcacTCTAGTACAggtaaatagttaacacacacacatggacgcggcggtctaaggcactgcatctcagtgaaagAGGCGTCACTATGGTCCCTGATtcgaatctaggctgtatcacatctggccgtgattgggagtcccatagggcggcgcacaattggcccagtgtcgcccgggctgtcattgtaaataagaatttgttcttaattgacttgcctagttaact
>XM_021565674.2
CGGAATCACGTGACATGTTCTTGTTTTGCGCATCCCGTTCCCCGCACAGCCCGTGGACTGAACGACTCCTCTCAATATCGCCGTGAAAATGGGGACACCTGAGAACCTGTCTGGCGGTACAGGTGGGCGAAGGGAGCCCCTCAGATTTGACCAGGATGCGTCCGCGACCGCCGTGGACATGGACACGGCAATTGTGCTTCTCGGAGCCGGCGTGACAGCTATCACACACCCGCTGCTGTACGTCAAACTGCTCattcagATTGGACATGAGCCCCTCACCCCAACTGTCGGAACCACCATGTTTGGGAGGAAAGTGTTGTACCTACCTGGATTCTTCTCCTATGCACAGCACATCGTAAGGGTTGATGGAAAGATGGGACTCTTCCGAGGTCTATCCCCTCGTATAATGTCCAGTGCCATCTCCACCATGGTCCGGAGTAAAGTCAAACAGGCCGTCCCAGCAGAGCAGGCGGAGCATGTATCGAACAGAGACGACTTGAAGACCTCCCTCAGGAAAGTGATGAAAGAGACCTCACATGAGATGGTCATCCAGTGCCTGTCCAGAATAGCCACTCATCCCTTCCATGTGATCTCCGTGCGATGCATGGCTCAGTTTGTGGGGAGAGAAGTCAAGTACAGGGGGCTGTTCAGCAGCATCACCAAAATCTTCAACGATGAGGGCATTGGGGGATTCTTTGTGGGGGTTGTGCCCCATATCCTGGGTGAGGTCATCTTTCTGTGGTGTTGTAACCTCCTGGCCCACTTCATCAACACCTACGCCGTGGACGACAATTTCAGCCAAGCCCCAGCAGTGAGAAGCTACACCAAGTTTGTGATGGGGATTGCAGTGAGTGTGTTGACGTACCCATTTATGCTGGTGGCAGACCTAATGGCAGTTAACAACTGTGGATTGATGGACACATCGTGGAAGAATACGATCGTGACGAGATGGCAAACATGCTGCTCTTGTTGAAATGAAGGGGACATTTAGGTTGGTGGCTGGTCTTCCCCCTAACTCTCCCATCTTTAAGTCCTGGGTCCACTGTTGGGCTCATCTGAGCCACGAG
>XM_036946753.1
GACGGAATCACGTGACATGTTCTTGTTTTGCGCATCCCGTTCCCCGCACAGCCCGTGGACTGAACGACTCCTCTCAATATCGCCGTGAAAATGGGGACACCTGAGAACCTGTCTGGCGGTACAGGTGGGCGAAGGGAGCCCCTCAGATTTGACCAGGATGCGTCCGCGACCGCCGTGGACATGGACACGGCAATTGTGCTTCTCGGAGCCGGCGTGACAGCTATCACACACCCGCTGCTGTACGTCAAACTGCTCattcagATTGGACATGAGCCCCTCACCCCAACTGTCGGAACCACCATGTTTGGGAGGAAAGTGTTGTACCTACCTGGATTCTTCTCCTATGCACAGCACATCGTAAGGGTTGATGGAAAGATGGGACTCTTCCGAGGTCTATCCCCTCGTATAATGTCCAGTGCCATCTCCACCATGGTCCGGAGTAAAGTCAAACAGGCCGTCCCAGCAGAGCAGGCGGAGCATGTATCGAACAGAGACGACTTGAAGACCTCCCTCAGGAAAGTGATGAAAGAGACCTCACATGAGATGGTCATCCAGTGCCTGTCCAGAATAGCCACTCATCCCTTCCATGTGATCTCCGTGCGATGCATGGCTCAGTTTGTGGGGAGAGAAGTCAAGTACAGGGGGCTGTTCAGCAGCATCACCAAAATCTTCAACGATGAGGGCATTGGGGGATTCTTTGTGGGGGTTGTGCCCCATATCCTGGGTGAGGTCATCTTTCTGTGGTGTTGTAACCTCCTGGCCCACTTCATCAACACCTACGCCGTGGACGACAATGTAAGCACGTTCAGCCAAGCCCCAGCAGTGAGAAGCTACACCAAGTTTGTGATGGGGATTGCAGTGAGTGTGTTGACGTACCCATTTATGCTGGTGGCAGACCTAATGGCAGTTAACAACTGTGGATTGATGGACACATCGTGGAAGAATACGATCGTGACGAGATGGCAAACATGCTGCTCTTGTTGAAATGAAGGGGACATTTAGGTTGGTGGCTGGTCTTCCCCCTAACTCTCCCATCTTTAAGTCCTGGGTCCACTGTTGGGCTCATCTGAGCCACGAG

Function

NR:

description
mitochondrial carrier homolog 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565673.2 False 1991 mRNA 0.47 12 34846484 34880899
XM_036946752.1 False 2002 mRNA 0.47 12 34846484 34880901
XM_021565674.2 False 1067 mRNA 0.53 12 34847614 34880902
XM_036946753.1 True 1078 mRNA 0.53 12 34847614 34880904

Neighbor

gene id symbol gene type direction distance location
LOC110491856 LOC106566938 coding downstream 50329 34770826 ~ 34796155 (-)
LOC110491852 prkcz coding downstream 250326 34454067 ~ 34596158 (-)
skia ski coding downstream 417273 34347929 ~ 34429211 (-)
LOC110491043 NA coding downstream 976429 33863087 ~ 33870055 (-)
LOC110491843 LOC106567362 coding downstream 983831 33772325 ~ 33862653 (-)
LOC110491858 LOC106566942 coding upstream 52985 34933889 ~ 34953455 (-)
LOC110491860 LOC106566943 coding upstream 101069 34977488 ~ 35013988 (-)
zgpat zgpat coding upstream 165573 35046477 ~ 35058485 (-)
LOC110491862 tnfrsf6b coding upstream 196903 35077807 ~ 35079706 (-)
LOC110491863 LOC106566945 coding upstream 240934 35121838 ~ 35270245 (-)
G1367863 NA non-coding downstream 83753 34762423 ~ 34762731 (-)
G1367854 NA non-coding downstream 94996 34747739 ~ 34751488 (-)
G1367825 NA non-coding downstream 148343 34697579 ~ 34698141 (-)
G1367822 NA non-coding downstream 152156 34694023 ~ 34694328 (-)
G1367783 LOC106567354 non-coding downstream 183421 34657335 ~ 34663063 (-)
G1367921 NA non-coding upstream 892 34881796 ~ 34883010 (-)
G1367922 NA non-coding upstream 4276 34885180 ~ 34885509 (-)
G1367944 NA non-coding upstream 47296 34928200 ~ 34928451 (-)
G1367829 NA non-coding upstream 48551 34929455 ~ 34930967 (-)
G1366756 NA other downstream 1095077 33747400 ~ 33751407 (-)
G1366703 NA other downstream 1162011 33684011 ~ 33684473 (-)
G1365099 NA other downstream 2210973 32634465 ~ 32635511 (-)
G1364348 NA other downstream 2826986 32018794 ~ 32019498 (-)
G1369101 NA other upstream 867072 35747976 ~ 35780436 (-)
G1369107 NA other upstream 867953 35748857 ~ 35752941 (-)
LOC110491868 LOC106566949 other upstream 922164 35474174 ~ 35994010 (-)
G1370601 LOC106566960 other upstream 2396741 37277645 ~ 37278677 (-)

Expression


Co-expression Network