XLOC_032887


Basic Information

Item Value
gene id XLOC_032887
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 27620675 ~ 27623521 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063909
ATACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTATTGCAGAAAGATCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAAGAGTTCAACCAGATAGTGTGGAAGAATCTTAAGCAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCAGGTCAAAGAGAGGATTCACTGGACAGATTTTTATCTTCTACAAAATATCAAGGCGTCTGACCTCACTGACATGCCATGTGTTGCCATTTGAGTGCTTCCAGTAGTTGTTGGTGATGACCCAACAGTTCTTCAAAGCATGTTTTGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCAAGAAAATTAAGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATTCTCTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCAAGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGATGCTGAAGGGTAACATTCTGGCTGTTAAAAATCAACTTGTCATGTAAACTGGTACAGAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACtgtgagataaaaaaaattaaaactatgcTTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTAAAATGTAATAACATCCTgtggttgtttattttttagatatgtttgtaaaaatgtatttaaaaattttaaacaagtgttttaataagatttataacaataaatattgaCTAATTGTTATACAAGGCATTTTCTAGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaataaactgtaaagtaaattttta
>TCONS_00063910
CTGACGTCACTGGTGAATACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTATTGCAGAAAGATCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAAGAGTTCAACCAGATAGTGTGGAAGAATCTTAAGCAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCAGGTCAAAGAGAGGATTCACTGGACAGATTTTTATCTTCTACAAAATATCAAGGCGTCTGACCTCACTGACATGCCATGTGTTGCCATTTGAGTGCTTCCAGTAGTTGTTGGTGATGACCCAACAGTTCTTCAAAGCATGTTTTATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCAAGAAAATTAAGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATTCTCTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCAAGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGATGCTGAAGGGTAACATTCTGGCTGTTAAAAATCAACTTGTCATGTAAACTGGTACAGAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACtgtgagataaaaaaaattaaaactatgcTTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTAAAATGTAATAACATCCTgtggttgtttattttttagatatgtttgtaaaaatgtatttaaaaattttaaacaagtgttttaataagatttataacaataaatattgaCTAATTGTTATACAAGGCATTTTCTAGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaataaactgtaaagtaaattttta
>TCONS_00065162
TTATCCCTAAAGTTGTATTAATTCAAAATACTTAGattcaataaacataaaaaacaacttttttgctTAGTTAtccattttgtttagtttattgtacGATTTGCATGATATTTTTGATTCTACTGGAATGTTCAAATTGAATGTACTTAACAAAGCTTATTTTAGTCTATTGGTAAAGGAGTGATGTGCAAGGGGAAATGTGATTGGCTCTTTGTCTTTGGACTGACGTCACTGGTGAATACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTGTGAGTACGATTTCATACTTTTGTCTCAAACAGTCCACATTGTTTTCCTTTAATAAACAAAGTATGTAACCGTTAGCAAGAAAACCACATGTAAGATTAAGCTGTGTCTGACGTTAGGATCATGTTATTGTTCCGGTCAATCGCAACCGCCATTGCCACATTTATTAACAGTTCTAAGACGTGAAAAGTGCAAAGACGTGCGTAATAGGATCATGATAGatcatatattatgtaaaaaaaaaaagttaatgtaagtTTTGCCTGTGTTAGCGTATTCATTTATGCCACGTATAACCGATCACGGCCGCCGCATTTCATCTATATAATTCGTTACAGTTACTGTACGTGGAAACATGCTTTATGAGGTCGTCACGTATAAAGTTTAATATTGATGCTGTATTCGATGAGTCATCCGCGTTATCTTTTGTGTAAACTGATTATTTTTTCAGTGGTGGTTATGTGTCGTCAGATGTTTAGCATAACATAACCTGAGctgtttttaccattttttttttacttttttttttcttgtaagtgAAGTATTAACTGACTAGAATACATTGAGATTTGCCCCTTCGGAAATACGAATTCATGTTAGTTGGCAGTTTTTAAAGATATGCAACCTCGTGCTCATCAGTCTTAGCAAGTGAATTTTCAGTTAATTAGAATGAAAGCTAAATAATTAACTGTAGCTCTCTAATTCTTTTGATTAACAATAGCTGTTTGTGGGAAATTTGGAGATAACAGATCAAattatgtaaatgtgttttgtcagctagtaatctaatgtatatttttgtaactGTAGATTGCAGAAAGATCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTAAGTATTGCTCATTTGCTTGTGACAAAAGATGGTACTTATTAAAACATTGCAGATTTAAACATGGGAGCTATGCAAAAAGCCAGCCATTTCCATGCATATATCAGGAATGTGTTTGTAATGAAATGAGTACAGTATTGATAAACatgataacatgctaatttgacagttgtttaattttgacatttctcTGATGTTAATAAACTTTTTTGTGTTTTACTACTACAGGTGTATCAAGAGTTCAACCAGATAGTGTGGAAGAATCTTAAGCAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCAGGTCAAAGAGAGGATTCACTGGACAGATTTTTATCTTCTACAAAATATCAAGGTTTGTGTATGCCATTGTTTGTACATGCCTTTGACATAAATTGATGCCATTGTGTGCTGAATTCTGAAATTTATATAATTACTTTAGAAATCCTCAGTGACAGAGACTAAATTTTAATACATGGAAATGCCCTTTCTCTCATGTTGACAAATGATACAATGTTGTTTCTCTGCAACACCTCAGGCGTCTGACCTCACTGACATGCCATGTGTTGCCATTTGAGTGCTTCCAGTAGTTGTTGGTGATGACCCAACAGTTCTTCAAAGCATGTTTTGTAAGTATCCTTAATAAAAGTTTTTGTATATTAATCTAAgtttttttgcattatatttcTTAATGTGCATTTATGTtagcaataacaataaataaatcacccaAGCAATGTCTTATTGTAGTTCATTAATAAATAGAATAATGATCAACATGAAATTTGAATTCATGTTATAACTTCTTTGAAACTCTAAAATGATAAGTAGAATTATATAAAGTCTTTAGTAATTTAATTATATCAAATCTTTTTATGCCGTATGCATTGACTTGtatacaaaaatatttgtattatttttatatttgatatatCATTGAATACTGGATATGTTTGGGTATACAATTAACAAATTATGCTTGCATACAACTAAAAAACATtacatacaaataatatatattaaaatcaaatgtaCACCTCTAAGatatatttatgttatctatttatTGTTGTCAGGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCAAGAAAATTAAGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATTCTCTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCAAGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGATGCTGAAGGGTAACATTCTGGCTGTTAAAAATCAACTTGTCATGTAAACTGGTACAGAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACtgtgagataaaaaaaattaaaactatgcTTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTAAAATGTAATAACATCCTgtggttgtttattttttagatatgtttgtaaaaatgtatttaaaaattttaaacaagtgttttaataagatttataacaataaatattgaCTAATTGTTATACAAGGCATTTTCTAGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaataaactgtaaagtaaattttta

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001757 somite specification biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006413 translational initiation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0007379 segment specification biological_process
GO:0061053 somite development biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063909 False 943 lncRNA 0.36 5 27620675 27623283
TCONS_00063910 False 952 lncRNA 0.36 5 27620675 27623299
TCONS_00065162 True 2847 lncRNA 0.32 1 27620675 27623521

Neighbor

gene id symbol gene type direction distance location
XLOC_032886 NA coding downstream 128928 27490737 ~ 27491747 (-)
XLOC_032885 zgc:103559 coding downstream 481279 27126620 ~ 27139396 (-)
XLOC_032884 agxta coding downstream 497348 27112884 ~ 27123327 (-)
XLOC_032883 dtymk coding downstream 511831 27104962 ~ 27108844 (-)
XLOC_032882 stk25a coding downstream 562973 27041594 ~ 27057702 (-)
XLOC_032888 AL935299.1 coding upstream 72802 27696323 ~ 27727397 (-)
XLOC_032889 im:7152348 coding upstream 260851 27884372 ~ 27891961 (-)
XLOC_032890 NA coding upstream 314968 27938489 ~ 27954601 (-)
XLOC_032891 si:ch73-194h10.3 coding upstream 491862 28115383 ~ 28117995 (-)
XLOC_032892 NA coding upstream 500860 28124381 ~ 28130130 (-)
XLOC_032881 NA non-coding downstream 582304 27035652 ~ 27038371 (-)
XLOC_032879 NA non-coding downstream 794751 26824950 ~ 26825924 (-)
XLOC_032878 NA non-coding downstream 945732 26561981 ~ 26674943 (-)
XLOC_032876 NA non-coding downstream 1310828 26290783 ~ 26309847 (-)
XLOC_032898 NA non-coding upstream 1360496 28984017 ~ 28986397 (-)
XLOC_032908 NA non-coding upstream 1786705 29410226 ~ 29411285 (-)
XLOC_032910 NA non-coding upstream 2034380 29657901 ~ 29659956 (-)

Expression


Co-expression Network