XLOC_033155 (BX569793.1)


Basic Information

Item Value
gene id XLOC_033155
gene name BX569793.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49310908 ~ 49322532 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064425
GCTAAGTTCTCCGATAATgaagtcaaacaaacaaacgccCCAAACACTCGATGGGATCCACGCCGTTTGCCGCCAAAAAGCTTTTTGGCCTGAGGTCGACACATCATCCTCAAAATCACACCAGGAGTTTGAGACCCATCTGTAAAGCAGTTTACAAAAGcagGTGTGTTTCATTGGGTGATGTCCACGATGGTTTACCCCGGTGACGAGGCTCTAGAGTGGATTATGCAGGATGAAATCGTGCTGACTACAACATTAAATCGTTGATCAGCTTGGAGACGCTGCAAGGGGAACAGGCTCATCTCCCAAAACCATTCTGGACTGCAGTCAACCAGCCGGAGCGCAGGAGAAATCCAGACTGCTGCTCGAGGACCTGAAGGAGGACATTGAGCTGGGCCTGGAAGAAGCACAGTGGAAACAGGAGCGCAGGAGAAATCCAGACTGCTGCTGGAGGACCTGGAGGAGGACATTGAGCTGGGCCTGGGAGAAGCACAGCGTAAACAGGAGCGCAGGAGAAATCCAGACTGCTGCTGGAGGACCTGGAGGAGGACATTGAGCTGGGCCTGGGAGAAGCACAGCGGAAACAGGAGCGCAGGAGAAATCCAGACTGCTGCTGGAGGACCTGGAGGAGGACATTGAGCTGGGCCTGGGAG
>TCONS_00065227
GCTAAGTTCTCCGATAATgaagtcaaacaaacaaacgccCCAAACACTCGATGGGATCCACGCCGTTTGCCGCCAAAAAGCTTTTTGGCCTGAGGTCGACACATCATCCTCAAAATCACACCAGGAGTTTGAGACCCATCTGTAAAGCAGTTTACAAAAGtgtacacaaCGATAAGTGTGGCCAACTATTTCCAAGAGGAGGGGAGACTGCGGAGACTGCAGACTTTGATCCAGACAGtgaGCATGAAGAATTTGATGCAAGGATTCTGCTTCACTTTAAGAAAACTGCCAATCTAGTGATATTgttgtcaataaataaatgtaaaaaaaatctaatgttgtCTGGCTTTTTCATTGTCAGGTTGCTAAATGGTCCTTGGAATTTTAGAAAG
>TCONS_00065228
AGTTTGCTAAGTTCTCCGATAATgaagtcaaacaaacaaacgccCCAAACACTCGATGGGATCCACGCCGTTTGCCGCCAAAAAGCTTTTTGGCCTGAGGTCGACACATCATCCTCAAAATCACACCAGGAGTTTGAGACCCATCTGTAAAGCAGTTTACAAAAGGTATATTATGTTCGTTTGTGTTGTTGATTAACGTAACGTTAGCAGTGTTGCTAACCTGCAGCCCGGTTTGAATTGAGTAAAGTTTTGTTTGTGAAAATAATAGCTTGACattttaatagggtatatgccgagctagtgtttttcccatactgataaacttatggtgacctgttattgtgaacttttttcgtttcatacggttccttttacagtatcgatgttgtaatgtcagtaaatacattcagttaaataaactttggcatttatttagttgctcaagcgtaaaacgagacaaaaagccgtttgctcgcacgcgcccgtcagaatcggcaagCTAGCGCAGAAGTtttattgaatatactggggtaaaataaatgctcatattataaagacatggcggggaaacaTGTAacgtaatgcagtgcttcttgtataatctgagacccactttaaatctgatatcactcagccagtggagatcgctgatttaacaaaacagaccttaaacgcaccgtttttgcattggcattcaattcgccggaagcgcttaaaccaggttactggcaaattaaaagtcctattagcatgctaatatgacttttaataaataatctttataatatgagcatttattttaccccagtatattcaatggagctcctgtcctgctgattctgacggacgcgtgcgagcaaacggctttttgtctcgttttacgcttaagcaactaaataaatgccaaagtttatttaactgaatgtattttaatgacattaacacatcgatactgtaaaaggaaccgtataaagcggaaaaaaagttcacaataacaggtcaccagaagtttatcagtatggggaAAACACTAACTCGGCATACACACTATTGAATTCTGCTTAATGTTTAGCCTAAATGAGAAACTGTTATACTACAGTTTGCTtcgttttaaagagtttttgtaTTGCACTCAGTTGATTTATCGTCGTCATCCAGACAGTGATTGTCGAGTGAATGttgaattaaacatttatttatttgtatatgcgGATGTGCCGCTTTTTGAATAAAGTAGATTCAGGCTGTTTGTTAATACTTGGGGAGTCTTTTATAAGAGCAGGCCTCAGTTTGTTGTGCAGGATGAGTGATGATGttgaattgaggtaaagttgattttatattcgcgCATTCATTCAATTGTATAGTACAGTATATATGACTAACGTAGACTAACCATATTccgtacattaaaaaaaaattcaactatgaatccttgcatttactaatttaagtggttgtaaacaatttatttgggctgaatttaaacaaataaattaagttgaacattactaaatttactttgtttaaattcaacacataaattgtttgcagcatttttttttcagtgtacacaaCGATAAGTGTGGCCAACTATTTCCAAGAGGAGGGGAGACTGCGGAGACTGCAGACTTTGATCCAGACAGGTCTACGGCCTAAGCAGTTTTACGTCCCAGGAAGTTTTACACCCCTGTTGTCCCTGATGCGTCCAGTAGAGGGAGGCAGTGCAGTATTTTTTTTAAGCCTCCAGAACTATACCACACTCAACCATAATTGCattcaattacatttaatataatgcTCTAATGTTctagtttaaacaattaaactatCATATATCTATAAATGCAAAGAAACTCACAATTTTAAATGGTCtactgatttttatttgtatagctatACAGTGCCTTTTGTATATTATACTATGAAGTTTGCATTGAACATGCATTCATATTGTTTATCacttattgttttataatatttattgtacCAATTTGTTACATGGAAAATAATAAGATATGGGAAGGTCAGTATCACACTTTGTtgctgcaaataaaaaataagtaatgtcTTGGTCCTTTTGTTTTACCTTGTTATAATTCTTAtagaataaatcaaataaaaacattttgatatttttcGCATAGGTCCAGATTATATATAAAATggcatgaaatgttttttttttttgcttttcatttgccATTCTTTACTGTTTCTGGggattaagaatttttagatatttggtctagaaaAAAGTCAAACTTTTAAGTGCGTAAAGGATTTTTGCAGAGTATTtaaacataactttatttgtttatttttcagtgaGCATGAAGAATTTGATGCAAGGATTCTGCTTCACTTTAAGAAAACTGCCAATCTAGTGATATTgttgtcaataaataaatgtaaaaaaaatctaatgttgtCTGGCTTTTTCATTGTCAGGTTGCTAAATGGTCCTTGGAATTTTAGAAAG
>TCONS_00064426
GGGCACCTGTTTGCCAGTTCAATAGTTTGCTAAGTTCTCCGATAATgaagtcaaacaaacaaacgccCCAAACACTCGATGGGATCCACGCCGTTTGCCGCCAAAAAGCTTTTTGGCCTGAGGTCGACACATCATCCTCAAAATCACACCAGGAGTTTGAGACCCATCTGTAAAGCAGTTTACAAAAGtgtacacaaCGATAAGTGTGGCCAACTATTTCCAAGAGGAGGGGAGACTGCGGAGACTGCAGACTTTGATCCAGACAGGTCTACGGCCTAAGCAGTTTTACGTCCCAGGAAGTTTTACACCCCTGTTGTCCCTGATGCGTCCAGTAGAGGGAGGCAGTGCAGTATTTTTTTTAAGCCTCCAGAACTATACCACACTCAACCATAATTGCattcaattacatttaatataatgcTCTAATGTTctagtttaaacaattaaactatCATATATCTATAAATGCAAAGAAACTCACAATTTTAAATGGTCtactgatttttatttgtatagctatACAGTGCCTTTTGTATATTATACTATGAAGTTTGCATTGAACATGCATTCATATTGTTTATCacttattgttttataatatttattgtacCAATTTGTTACATGGAAAATAATAAGATATGGGAAGGTCAGTATCACACTTTGTtgctgcaaataaaaaataagtaatgtcTTGGTCCTTTTGTTTTACCTTGTTATAATTCTTAtagaataaatcaaataaaaacattttgatatttttcGCATAGGTCCAGATTATATATAAAATggcatgaaatgttttttttttttgcttttcatttgccATTCTTTACTGTTTCTGGggattaagaatttttagatatttggtctagaaaAAAGTCAAACTTTTAAGTGCGTAAAGGATTTTTGCAGAGTATTtaaacataactttatttgtttatttttcagtgaGCATGAAGAATTTGATGCAAGGATTCTGCTTCACTTTAAGAAAACTGCCAATCTAGTGATATTgttgtcaataaataaatgtaaaaaaaatctaatgttgtCTGGCTTTTTCATTGTCAGGTTGCTAAATGGTCCTTGGAATTTTAGAAAG
>TCONS_00065229
CACGTCAGCCGGGGCACCTGTTTGCCAGTTCAATAGTTTGCTAAGTTCTCCGATAATgaagtcaaacaaacaaacgccCCAAACACTCGATGGGATCCACGCCGTTTGCCGCCAAAAAGCTTTTTGGCCTGAGGTCGACACATCATCCTCAAAATCACACCAGGAGTTTGAGACCCATCTGTAAAGCAGTTTACAAAAGcatttttttttcagtgtacacaaCGATAAGTGTGGCCAACTATTTCCAAGAGGAGGGGAGACTGCGGAGACTGCAGACTTTGATCCAGACAGGTCTACGGCCTAAGCAGTTTTACGTCCCAGGAAGTTTTACACCCCTGTTGTCCCTGATGCGTCCAGTAGAGGGAGCATGAAGAATTTGATGCAAGGATTCTGCTTCACTTTAAGAAAACTGCCAATCTAGTGATATTgttgtcaataaataaatgtaaaaaaaatctaatgttgtCTGGCTTTTTCATTGTCAGGTTGCTAAATGGTCCTTGGAATTTTAGAAAG
>TCONS_00065230
TAAATACGCACGTCAGCCGGGGCACCTGTTTGCCAGTTCAATAGTTTGCTAAGTTCTCCGATAATgaagtcaaacaaacaaacgccCCAAACACTCGATGGGATCCACGCCGTTTGCCGCCAAAAAGCTTTTTGGCCTGAGGTCGACACATCATCCTCAAAATCACACCAGGAGTTTGAGACCCATCTGTAAAGCAGTTTACAAAAGtgtacacaaCGATAAGTGTGGCCAACTATTTCCAAGAGGAGGGGAGACTGCGGAGACTGCAGACTTTGATCCAGACAGGTCTACGGCCTAAGCAGTTTTACGTCCCAGGAAGTTTTACACCCCTGTTGTCCCTGATGCGTCCAGTAGAGGGAGCATGAAGAATTTGATGCAAGGATTCTGCTTCACTTTAAGAAAACTGCCAATCTAGTGATATTgttgtcaataaataaatgtaaaaaaaatctaatgttgtCTGGCTTTTTCATTGTCAGGTTGCTAAATGGTCCTTGGAATTTTAGAAAG

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048864 stem cell development biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096832

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064425 False 653 lncRNA 0.54 2 49310908 49322485
TCONS_00065227 False 392 lncRNA 0.41 3 49320009 49322485
TCONS_00065228 False 2482 lncRNA 0.34 1 49320009 49322490
TCONS_00064426 False 1102 lncRNA 0.34 2 49320009 49322513
TCONS_00065229 False 516 lncRNA 0.43 3 49320009 49322524
TCONS_00065230 True 510 lncRNA 0.44 3 49320009 49322532

Neighbor

gene id symbol gene type direction distance location
XLOC_033154 ngfb coding downstream 95081 49169420 ~ 49215827 (-)
XLOC_033153 tspan2a coding downstream 151701 49107048 ~ 49159207 (-)
XLOC_033152 NA coding downstream 206716 49100879 ~ 49104192 (-)
XLOC_033151 slc5a8l coding downstream 232206 49063289 ~ 49078702 (-)
XLOC_033150 si:ch211-105j21.9 coding downstream 247823 49061077 ~ 49063085 (-)
XLOC_033156 rplp2 coding upstream 186273 49508805 ~ 49510553 (-)
XLOC_033157 rps26l coding upstream 197592 49520124 ~ 49526510 (-)
XLOC_033158 FO704848.1 coding upstream 206482 49529014 ~ 49537646 (-)
XLOC_033159 ppp4r1l coding upstream 218746 49541278 ~ 49547680 (-)
XLOC_033160 BX323459.2 coding upstream 262929 49585461 ~ 49655235 (-)
XLOC_033149 NA non-coding downstream 361393 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 non-coding downstream 698758 48612034 ~ 48612150 (-)
XLOC_033145 CU469362.1 non-coding downstream 929685 48380245 ~ 48381223 (-)
XLOC_033141 NA non-coding downstream 1249249 47979305 ~ 48061659 (-)
XLOC_033163 NA non-coding upstream 437823 49760355 ~ 49771639 (-)
XLOC_033167 BX629346.2 non-coding upstream 595722 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding upstream 597404 49919936 ~ 49921857 (-)
XLOC_033171 CU928043.1 non-coding upstream 812787 50135319 ~ 50135437 (-)
XLOC_033172 NA non-coding upstream 1037125 50359657 ~ 50380212 (-)

Expression


Co-expression Network