LOC110511355 (LOC106592813)


Basic Information

Item Value
gene id LOC110511355
gene name LOC106592813
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7758036 ~ 7801058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951592.1
ATTACGTCATTAACAGTCGCCGGTGCCACTCGTGTTGTCAAAATGAAATGTTTACAATGAGAATTATCATCATTATTTTACGTGTTTTTAAACACCATAAATCGTTTTAGTTAGTCGGTGAGATGTCGGCGTTCAGCTCAGAGCTCATTGACTACCTGGAGGGAAGAATTTCATTCGAGGAGTTTGAAATacggagagaggaaagaaaagctAAATTGAAGGTATCGAACGAAGGGCGTTCAGAGGAAGATGAAGAGATTGGACCAGATGACACTCTCCCCAGCACTTCCCACGGCCGCAGTCCGAGAAAATGTTCTCAAAAACGGCCCGCAGCGGGTCCCGAGGAAGGCgtcagcccctctgtccagaagGCCTTTGCCTCGATGATGGAGGAGGGAACAGAGACTGAACAgactgaggaagaggaagaggaggaggaggatgatgaagatGACGATtatgaagaagaggaagaggaggattcagaggaggagaggaaggttgAAGCTAAGGAAGATGAGGAAGGGCCCTCAGCTGGGGATGTCTTTGCTCTGGAAATGGAGCTTAACCGAGAGAACAAGAAGATGATGAAGGAGAGACGTAACCGCAGCAAGCTGCCCCGGGCCCTAAGGGGCCTCATGGGAGAAGCCAACATCCGTTACGCCCGCGGAGACAAGGAGGACGCCGTCCTGATGTGTATGGAGATCATCAGACAGGCCCCACTGGCCTACGAGCCCTTCTCCACCCTGGCTATGATCTATGAGGACCAGGGGGACATGGAGAAGTCTCTACAGTTTGGCCTGATCGCTGCTCATCTCAACCCCAGCGACTGTGAGGAGTGGGTCAAGCTGGCCGACATGTCTCTGGAGCAGGACAACATCAGGCAGGCCATCATCTGCTACACCAAAGccaTTAAGTATGACCCCAGTAATGTGCGCTACCTATGGGAACGTTGCAGCCTGTATGAGCAGGTGGGGGAACACAAGCAGTCCATGGACGGGTACCGTCGTATCCTCAACCTACTGCCCCCTACTGACGGGGAGCACTTCATGCAGCTGTCACGAGACATGGCCAAAAGCTACTATGAGAGTAGTGACCTGCCGTCAGCCATGGGGGTGATGGAGAAGGCCCTGAGGAGACACCCAGAGCTGGTGACAGACGAGAGCATCAACATGGCTGCTGAGCTCTACATCGCCAACCACCAACACGACAAGGcccttcagGTTCTAGTCCAGTTCTGCGGGATCGTCCTGGAGAGAGGAGAACCTAAGCCAGACCTTGTAGAGGAGGAGAAcccagaggaggagcaggagaagatggAATCAGAGGAGAACccagaggagcaggagaagatggAAGCAGAGGAGAACCCAGAAGAGCAGAAGAAGATGgaagtagaggaggaagaggagcagaaGAAGAtggaagcagaggaggaagaggagcagaaGAAGATGGAAGCAGAGGAGGAGAAcccagagaaagaaaaggagatgAAAACAGCGACAACAGAAGAGCCTGGTGAGACTGGAggggAGGTTAGAGAGGTGGTAGTTCCAGACCATGTACCAGTGGACATCAGAGTGAAACTCATGGTCTGTCTGATCCACCAGCATGTTTACAGACCTCTGGATtccatgtTGACGTCTCTGATGGAGCAGAGCCCAGAGGAGCTGGGGGATCTGTACCTGGACGTGGCTGAGGCCTTCCTGGACCAGGGAGAGTACAACTCagccctgcctctcctctctgccctggTCTGCTCTGAGAGATACAACCTGGCTGTTGTCTGGCTCCGACACgctgAGTGTCTGAAGGCGCTGGGCCACATGGAGGTAGCAGTGAAGAGTTACAACAAGGTAGTACAGATGGCTCCTCTTCACCTGGAGGCCAGGCTGTGTCTGTCTACTCTGCAGCAGCAGCTGGGTCGACCCCTCTGTGCCCTCAAGGCCCTGGAGCCCATGTACGACCCAGACACACTGGCACAGGACGCCTCCGCAGCACAGCAGgAGTTGAAGCTGCTGCTCCACCGCTCTACTCTCCTGCGTTCCCAAGGCCGACTGGATGACTACCTGGATACCATGCTGACCATGCTGGCTATGCTGCTGAAGGTGGCTATGACGCGGGCCCAGGTGTGTGTCAAAGCCAGCATGTGGGCGGGGGTCAGACACCTGCGTCTGGTCAAGGTGTCTAAGGATCTGGTGTCTGACATCCACGACCAGGAGGCAGCCTACCAGGACATCAGTGgtaAGACCAGTGTGTTGTCTCGTGAGGACTGGTGGTTGCTgttggtgaggtgtgtgtgtactctgtgtgagATGAAGCGTTTTAAAGAGGCAGAGCTGCTGGTAGACTCTTCTCTGGAGTTCTACTCCTTCTATGACGTCAAGGTGAAGAGGAAAGAGCTGGAGTTCTTTGGTCTGTCGGCTGCTTTCCTGGACCATAACTACCGCAAGGCCTACGATTACATCAGACTGACGCTGATGGAGAAGCAGGAGTGGCCCATGCTGTGGAATGTATTCAACCAGGTGACCCTTCACTCCCAGGACGTGCGTCATCATCGGTTCTGTCTGCGTCTGATGATGAAGAACCCAGACAACCACGCCCTGTGTGTTCTCAGTGGACACAACGCCCTGGTGTCTGGCAGCTTCAAACACGCACTCGgtcagTATGTTCAGGCGTTCAGGTCTAAGCCAGATGAACCTCTGTACAGTCTGTGTGTTggcctcaccttcttccacatggcGTCTCAGAAGTTTGTGGTTAAACGCCACCCGCTAATACTGCAGGGATTCTCATTCCTGTGGCGTTACGTGGAGCAGCGTGGGCCCTGCCAGGAGAGCATGTACAACCTGGGACGGGCCCTGCAGCAGATGGGCCTGGCACACCTCGCCATTCACTATTACCACAAGGCTCTCAGCTTCCCTCCTCTTACACTAGAGGGTATTGCGGATGACCAGGTAGACCTGCGTAGAGAGATAGCCTTCAACCTGTCAATCATCTACCAGGCCAGTGGAAACACTGAGATGGTACGGCACCTCATCAACACATACTGCACTGTATAAAGACCTATCAGGTCCTCAttactgaactgtataatgacctatcaggtcctcattactgaactgtataatgacctatcaggtcctcattactgaactgtataatgacctatcaggtcctctatactgaactgtataatgacctatcaggt
>TU1732463
GTGCCACTCGTGTTGTCAAAATGAAATGTTTACAATGAGAATTATCATCATTATTTTACGTGTTTTTAAACACCATAAATCGTTTTAGTTAGTCGGTGAGATGTCGGCGTTCAGCTCAGAGCTCATTGACTACCTGGAGGGAAGAATTTCATTCGAGGAGTTTGAAATacggagagaggaaagaaaagctAAATTGAAGGTATCGAACGAAGGGCGTTCAGAGGAAGATGAAGAGATTGGACCAGATGACACTCTCCCCAGCACTTCCCACGGCCGCAGTCCGAGAAAATGTTCTCAAAAA
>TU1732464
CCTCGATGATGGAGGAGGGAACAGAGACTGAACAgactgaggaagaggaagaggaggaggaggatgatgaagatGACGATtatgaagaagaggaagaggaggattcagaggaggagaggaaggttgAAGCTAAGGAAGATGAGGAAGGGCCCTCAGCTGGGGATGTCTTTGCTCTGGAAATGGAGCTTAACCGAGAGAACAAGAAGATGATGAAGGAGAGACGTAACCGCAGCAAGCTGCCCCGGGCCCTAAGGGGCCTCATGGGAGAAGCCAACATCCGTTACGCCCGCGGAGACAAGGAGGACGCCGTCCTGATGTGTATGGAGATCATCAGACAGGCCCCACTGGCCTACGAGCCCTTCTCCACCCTGGCTATGATCTATGAGGACCAGGGGGACATGGAGAAGTCTCTACAGTTTGGCCTGATCGCTGCTCATCTCAACCCCAGCGACTGTGAGGAGTGGGTCAAGCTGGCCGACATGTCTCTGGAGCAGGACAACATCAGGCAGGCCATCATCTGCTACACCAAAGccaTTAAGTATGACCCCAGTAATGTGCGCTACCTATGGGAACGTTGCAGCCTGTATGAGCAGGTGGGGGAACACAAGCAGTCCATGGACGGGTACCGTCGTATCCTCAACCTACTGCCCCCTACTGACGGGGA
>TU1732457
AGGCGTTCAGGTCTAAGCCAGATGAACCTCTGTACAGTCTGTGTGTTggcctcaccttcttccacatggcGTCTCAGAAGTTTGTGGTTAAACGCCACCCGCTAATACTGCAGGGATTCTCATTCCTGTGGCGTTACGTGGAGCAGCGTGGGCCCTGCCAGGAGAGCATGTACAACCTGGGACGGGCCCTGCAGCAGATGGGCCTGGCACACCTCGCCATTCACTATTACCACAAGGCTCTCAGCTTCCCTCCTCTTACACTAGAGGGTATTGCGGATGACCAGGTAGACCTGCGTAGAGAGATAGCCTTCAACCTGTCAATCATCTACCAGGCCAGTGGAAACACTGAGATGGTACGGCACCTCATCAACACATACTGCACTGTATAAAGACCTATCAGGTCCTCAttactgaactgtataatgacctatcaggtcctcattactgaactgtataatgacctatcaggtcctcattactgaactgtataatgacctatcaggtcctctatactgaactgtataatgacctatcaggtcctcattactgatctgtataatgacctatcaggtcctctatactgagctgtataatgacctatcaggtcctcattactgaactgtataatgacctatcaggtcctcattactgaactgtataatgacctatcaggtcctcattactgaactgtaatgacctatcaggtcccATGTGATGTGTATTAGGAGACATAATTGATGGCATAAAATAGTGTTTCCCCAAATATGTTTTTCTACAGCGGTGGTAAAGTTAGTGTAGTGGGTGTGGCCAATGGCACGGTCTCCGACCAAAAATGAGCAGAGATATTTTggtgttttaaagctaattttctgcaattctacacattttgctgtgGTTCTTATGCTATCTGAAtgactcaaacattataacaaaatcaatgggggccccatgACATGATATTTGGGGACTTTTTGATTCTCCCTAACtctagtttttattttggtgattatAGTTTTTGTTCTCAAATATAATCtttgtactgcagcgccagctgtgccaccagagactctgggttcgcgcccaggctctgtcctaaccggccgcgaccgggaggtccgtggggcgattggcctagcgtcgtccgggttagggagtgtttggccggtagggaaatccttgtctcatcgcgcaccagcgactcctgtggtgggccgggcgcagtgtgcgctaaccaaggttgccaggtgcacggtgtttcctccgacacattgctgcggctggcttccgggttggatgtgctctgtgttaagaagcagtgcggcttggttgggttgtgtatcggaggacgcatgactttcaaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactaaacaattggacaccacgaaatttgggagaaaaaggggtaaaataaaaaaatattaaaaaaatataatctTTAAAGAAATCTATCTCTCCATTAGCTTTTCtacatagaaatatatatatatgttttctgGGGGGAGTGGC

Function

NR:

description
general transcription factor 3C polypeptide 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951592.1 False 3214 mRNA 0.53 20 7758036 7797212
TU1732463 False 301 lncRNA 0.42 2 7758058 7758513
TU1732464 False 664 TUCP 0.55 4 7758748 7760971
TU1732457 True 1560 TUCP 0.46 5 7794270 7801058

Neighbor

gene id symbol gene type direction distance location
LOC110511354 LOC106575893 coding upstream 4312 7742795 ~ 7753724 (+)
LOC118941082 LOC106594224 coding upstream 24226 7716195 ~ 7733810 (+)
LOC110518829 LOC106592802 coding upstream 46068 7708674 ~ 7711981 (+)
LOC110495404 LOC106574906 coding upstream 140724 7600419 ~ 7617337 (+)
LOC110496984 LOC106595027 coding upstream 160648 7585227 ~ 7597388 (+)
LOC110516423 LOC106574939 coding downstream 4411 7801623 ~ 7888704 (+)
spag17 spag17 coding downstream 93975 7891187 ~ 7946810 (+)
LOC118941084 NA coding downstream 165371 7961999 ~ 7965688 (+)
LOC118941085 LOC106575914 coding downstream 672187 8469399 ~ 8472672 (+)
LOC110528836 chsta coding downstream 677840 8475052 ~ 8479361 (+)
G1513976 NA non-coding upstream 9597 7747320 ~ 7748439 (+)
G1513948 NA non-coding upstream 18106 7738170 ~ 7739930 (+)
G1513970 NA non-coding upstream 46677 7711105 ~ 7711359 (+)
G1513958 NA non-coding upstream 69420 7686823 ~ 7688616 (+)
G1513987 NA non-coding downstream 6519 7803731 ~ 7804132 (+)
G1514003 NA non-coding downstream 34290 7831502 ~ 7832843 (+)
G1514009 NA non-coding downstream 58762 7855974 ~ 7856921 (+)
G1514014 NA non-coding downstream 114051 7911263 ~ 7911547 (+)
G1513922 NA other upstream 136095 7620296 ~ 7621941 (+)
G1513874 NA other upstream 331065 7426583 ~ 7426971 (+)
LOC110513752 LOC106575969 other upstream 660876 7032578 ~ 7102239 (+)
G1513452 NA other upstream 731226 7026208 ~ 7026810 (+)
LOC110516612 LOC106574917 other upstream 1047988 6705632 ~ 6710286 (+)
G1514045 LOC106574979 other downstream 216648 8013860 ~ 8015030 (+)
G1514180 NA other downstream 550015 8347227 ~ 8412799 (+)
LOC110528849 LOC105022557 other downstream 701338 8498352 ~ 8506254 (+)
G1514274 NA other downstream 779281 8576493 ~ 8576825 (+)
LOC110495394 LOC106574832 other downstream 877117 8623967 ~ 8676626 (+)
G1513978 NA non-coding downstream 2914 7761427 ~ 7761639 (+)
LOC110511355 LOC106592813 other downstream 235 7758036 ~ 7801058 (+)

Expression


Co-expression Network