LOC118941085 (LOC106575914)


Basic Information

Item Value
gene id LOC118941085
gene name LOC106575914
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8469399 ~ 8472672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951618.1
GGTTACCATGGCAACAAGACGTAGGAACATTGTCATAGGTACTTGTTTTCAACGGACAACATTCAGCCGGATCTATTTCCGGTCCTTCCTTTTCAACAGTTCCCCACCAAAATGGCTCCTACCaagaagggagagaagaagaaggggcGTTCAGCCATCAATGAGGTGGTGACCAGAGAATACACCGTCAACATCCACAAGCGCATCCATGGAGTGAGCTTCAAGAGGAGAGCTCCTCGTGCTCTCAAAGAGATCCGCAAGTTCGCCATGAAGGAGATGGGAACTCCTGATGTACGCATCGACACCCGCCTGAACAAGGCTGTGTGGACCAAAGGCGTCAAGAACGTGCCATACAGGATGAGACTAACGTTCACCTGTGTTATTTACAGGATGAGACTAACGTTCACCTGTGTTATTTACAGGAACGTGCCATACAGGATGAGACTAACGTTCACCTGTGTTATTTACAGGATGAGACTAACGTTCACCTGTGTTATTTACAGGAACGTGCCATACAGGATGAGACTAACGTTCACCTGTGTTATTTACAGGAACGTGCCATACAGGATGAGACTAACGTTCACCTGTGTTATTTACAGGAACGTGCCATACAGGATGAGACTAACGTTCACCTGTGTTATTTACAGGAACGTGCCATACAGGATGAGACTAACGTTCACCTGTGTTATTTACAGGAACGTGCCATACAGGATGAGACTAACATTCACTATGTTATTTACAGGAACGTGCCATACAGGATGAGACTAACGTCCACCT
>XM_036951619.1
GCAACAAGACGTAGGAACATTGTCATAGGTACTTGTTTTCAACGGACAACATTCAGCCGGATCTATTTCCGGTCCTTCCTTTTCAACAGTTCCCCACCAAAATGGCTCCTACCaagaagggagagaagaagaaggggcGTTCAGCCATCAATGAGGTGGTGACCAGAGAATACACCGTCAACATCCACAAGCGCATCCATGGAGTGAGCTTCAAGAGGAGAGCTCCTCGTGCTCTCAAAGAGATCCGCAAGTTCGCCATGAAGGAGATGGGAACTCCTGATGTACGCATCGACACCCGCCTGAACAAGGCTGTGTGGACCAAAGGCGTCAAGAACGTGCCATACAGGATGAGGGTACGATTGTCCAGGAAGCGCAATGAGGATGAAGACTCCCCAAACAAACTGTACACACTCGTCACGTATGTCCCTGTCACAACATACAAAGGTCTACAGACGGTCAATGTTGATGAGAATTAGATCTGTCTTCAACGCTTGTAGAATAAATGTATAGAAGTA

Function

NR:

description
60S ribosomal protein L31

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02910 RP-L31e, RPL31; large subunit ribosomal protein L31e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951618.1 False 777 mRNA 0.46 4 8469399 8472026
XM_036951619.1 True 515 mRNA 0.48 5 8469409 8472672

Neighbor

gene id symbol gene type direction distance location
LOC118941084 NA coding upstream 506319 7961999 ~ 7965688 (+)
spag17 spag17 coding upstream 522589 7891187 ~ 7946810 (+)
LOC110516423 LOC106574939 coding upstream 580695 7801623 ~ 7888704 (+)
LOC110511355 LOC106592813 coding upstream 672187 7758036 ~ 7801058 (+)
LOC110511354 LOC106575893 coding upstream 715675 7742795 ~ 7753724 (+)
LOC110528836 chsta coding downstream 2380 8475052 ~ 8479361 (+)
LOC110528849 LOC105022557 coding downstream 25680 8498352 ~ 8506254 (+)
LOC118936321 LOC106575888 coding downstream 33467 8506139 ~ 8511196 (+)
LOC110495394 LOC106574832 coding downstream 151579 8623967 ~ 8676626 (+)
LOC110495395 LOC106574852 coding downstream 204825 8677497 ~ 8682383 (+)
G1514227 NA non-coding upstream 11341 8457734 ~ 8458058 (+)
G1514176 NA non-coding upstream 53467 8336156 ~ 8415932 (+)
G1514208 NA non-coding upstream 67231 8401202 ~ 8402168 (+)
G1514205 NA non-coding upstream 71938 8397196 ~ 8397461 (+)
G1514192 NA non-coding upstream 91006 8370447 ~ 8378393 (+)
G1514240 NA non-coding downstream 569 8473241 ~ 8473790 (+)
G1514241 NA non-coding downstream 1716 8474388 ~ 8474727 (+)
G1514244 NA non-coding downstream 10058 8482730 ~ 8484157 (+)
G1514248 NA non-coding downstream 20853 8493525 ~ 8493895 (+)
G1514238 NA non-coding downstream 21850 8494522 ~ 8494818 (+)
G1514180 NA other upstream 56600 8347227 ~ 8412799 (+)
G1514045 LOC106574979 other upstream 454369 8013860 ~ 8015030 (+)
G1513922 NA other upstream 847458 7620296 ~ 7621941 (+)
G1513874 NA other upstream 1042428 7426583 ~ 7426971 (+)
G1514274 NA other downstream 103821 8576493 ~ 8576825 (+)
G1515005 cbs other downstream 527726 9000398 ~ 9003126 (+)

Expression


Co-expression Network