LOC110528849 (LOC105022557)


Basic Information

Item Value
gene id LOC110528849
gene name LOC105022557
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8498352 ~ 8506254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951636.1
TGAGCCTGCAAGTTTGGACAGAATGGACCTATTATCATATCCATGATTCTCCACAATTTGTGAGAGATTTTTTATTTGCTGTATTGAAAGTTAAAATAGTGCTAATTTGCTGAGAAATTGGTTTACTAGTCCTAGGAGAGTAGCCAACACGCATGCGCGTTTTGTTTCCTACGCTCCCTACCCCCTCGAGCCACCAGGGGCTAGTCGTTGGAGCGCAATGGCGGTGCACCGGGGACCTTCTTCGAAATGGCTCTTTTCCCGGGAGCAACTAGAAACAACGCCGTCCCGCCGCAGTGGAGTCGAATCTGATAGGGAACTTTCTTACCGACAGCAAGCCGCCAACCTAATTCAGGATATGGGCCAGAGACTCAACGTCTCTCAACTCATCATCAACACTGCAATCGTTTACATGCATAGATTTTATATGATTCACTCTTTCACTAAGTTTCATAGGAATATCATCTCCCAAACAACCTTGTTCTTGGCTGCGAAGGTGGAGGAACAACCTAGGAAGCTTGAACATGTCATCAAAGTGGCCCACGCCTGCGTCAACCCCCAGGATGCACCACTAGACACCAAGAGTAATGCATACCATCAGCAAGCTCAGGAGCTGGTGATACTAGAAACGATAGTACTGCAGACGCTAGGTTTTGAAATAACAATTGAACATCCTCACACTGATGTTGTGAGATGTTCCCAACTAGTGCGAGCAAGCAAGGATTTGGCACAGACTTCCTATTTCATGGCTACCAACAGGTTGTTATCCTGACCCCGCCCCCCCACTATGTTGCACTGTGATGGCACACTATAGCTTCCTGTACTGGCAGGTCCCCCTTCCTGTGTCCAACGCCCTCTTTGCGCCAGGCAGGTTTCTGGTAAACCCCTAGGGGTGGTACCGGCCAGCCAGGCTGCAGCAGTGCGGTGTATTGTACAAGGGCTCAGTGTTGGCACATAGGGGTTGAATGCACAATGTGAACGTGTTGGTGGTGCTGTAGACTGTCCTCACTGACCATTTGGTTGCTACAGAGTGCATATGTCTCCTCCTTCCTAAAACACAATTGGTAGCCTGAATATAGCTTGCCACTAAAGATCAGTGAAAAGATGTAAACTATAGCATCTGTCCCGCCTCCACCTCACCACGTTCTGCCTGCAGCACAAGCCCACAGTCATCGCCTGCGTCTGCATCCACCTGGCCTGTAAATGGTCCAACTGGGAGATCCCGGTCTCCACTGATGGGAAACACTGGTGGGAGTATCTGGACCGCA
>TU1732862
GGCTAGTCGTTGGAGCGCAATGGCGGTGCACCGGGGACCTTCTTCGAAATGGCTCTTTTCCCGGGAGCAACTAGAAACAACGCCGTCCCGCCGCAGTGGAGTCGAATCTGATAGGGAACTTTCTTACCGACAGCAAGCCGCCAACCTAATTCAGGATATGGGCCAGAGACTCAACGTCTCTCAACTCATCATCAACACTGCAATCGTTTACATGCATAGATTTTATATGATTCACTCTTTCACTAAGTTTCATAGGAATATCATCTCCCAAACAACCTTGTTCTTGGCTGCGAAGGTGGAGGAACAACCTAGGAAGCTTGAACATGTCATCAAAGTGGCCCACGCCTGCGTCAACCCCCAGGATGCACCACTAGACACCAAGAGTAATGCATACCATCAGCAAGCTCAGGAGCTGGTGATACTAGAAACGATAGTACTGCAGACGCTAGGTTTTGAAATAACAATTGAACATCCTCACACTGATGTTGT

Function

NR:

description
cyclin-T2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951636.1 False 1265 mRNA 0.49 7 8498352 8506254
TU1732862 True 489 TUCP 0.48 5 8498550 8504336

Neighbor

gene id symbol gene type direction distance location
LOC110528836 chsta coding upstream 18991 8475052 ~ 8479361 (+)
LOC118941085 LOC106575914 coding upstream 25680 8469399 ~ 8472672 (+)
LOC118941084 NA coding upstream 535272 7961999 ~ 7965688 (+)
spag17 spag17 coding upstream 551542 7891187 ~ 7946810 (+)
LOC110516423 LOC106574939 coding upstream 609648 7801623 ~ 7888704 (+)
LOC110495394 LOC106574832 coding downstream 117997 8623967 ~ 8676626 (+)
LOC110495395 LOC106574852 coding downstream 171243 8677497 ~ 8682383 (+)
LOC110495396 rnd3 coding downstream 212220 8718474 ~ 8744053 (+)
LOC110495389 mmadhc coding downstream 317275 8823529 ~ 8835425 (+)
LOC118941058 NA coding downstream 341736 8847990 ~ 8852444 (+)
G1514238 NA non-coding upstream 3534 8494522 ~ 8494818 (+)
G1514248 NA non-coding upstream 4457 8493525 ~ 8493895 (+)
G1514244 NA non-coding upstream 14195 8482730 ~ 8484157 (+)
G1514241 NA non-coding upstream 23625 8474388 ~ 8474727 (+)
G1514240 NA non-coding upstream 24562 8473241 ~ 8473790 (+)
LOC118936321 LOC106575888 non-coding downstream 4437 8506139 ~ 8511196 (+)
G1514253 NA non-coding downstream 14261 8520515 ~ 8520754 (+)
G1514254 NA non-coding downstream 15153 8521407 ~ 8521695 (+)
G1514255 NA non-coding downstream 16737 8522991 ~ 8525487 (+)
G1514272 NA non-coding downstream 68537 8574791 ~ 8575021 (+)
G1514180 NA other upstream 85553 8347227 ~ 8412799 (+)
G1514045 LOC106574979 other upstream 483322 8013860 ~ 8015030 (+)
LOC110511355 LOC106592813 other upstream 697294 7758036 ~ 7801058 (+)
G1513922 NA other upstream 876411 7620296 ~ 7621941 (+)
G1513874 NA other upstream 1071381 7426583 ~ 7426971 (+)
G1514274 NA other downstream 70239 8576493 ~ 8576825 (+)
G1515005 cbs other downstream 494144 9000398 ~ 9003126 (+)
G1515776 NA other downstream 1468274 9974528 ~ 9975306 (+)

Expression


Co-expression Network