LOC110495395 (LOC106574852)


Basic Information

Item Value
gene id LOC110495395
gene name LOC106574852
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8677497 ~ 8682383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951657.1
GCGCATCAAGCAAACTATAATTTGTACGGAGATGTGCGTTTACACATGTTGACCATACTTGCTACAAAGTTACAGAACGGTAAACCAACAACTACACAAACTgaaattggatacattgtaaacGCAGGTTCAACGAGAAAAAAAACTTGGCGGGCTAATAGACATTTTTTTTGGAGCATCTGATGACCTAACGTGGTGATGAACCTCTCAGAGGAGAACAGGACGGTCGTGGTCTCTGGTGTACCAGACACACTGTCCAGCAGCCGCATGGCAGACAAACTGGTTATTCACTTCCAGAGCTCCAGAAGCCACGGAGGAGATGTAGAAAACATCAAGTACCCGACCAGCTTCAAGGGGGTGGCTTTTGTTACATTTGAAAACACCAGAGATGCTGAGATGGTAATCAGAAAGAAGCAGATAATGTGTGACAAGGAGTTCCCTCAAGACTACCCTATCACTGTCTTCAAATTCACCCAAGACGTGTTGTTCTACGTGAACGCTAAAGTGGACCTGTCAATCTTCGGTGACGAGGAACAGCAGGAGACCGTGATCCAAAGCTTGCAGTCTGCTCACAGATCAGTGAGGATCTGCCTTCTACCCAGCCAGGAGGGTAAAGCTTCAGTGGAGGGACCCTTCTCTGCCATCAGGGACCTGAGAGAGGACCTGCTCCAGCAGGCCACTGCCAGCAGCAGCGGTCACCCAGGGGAGAAGCACGGGGCTCCATGGAGCTCTGGTTACTCCCTGACCTCAGTGGCAGCAGGGAATGGGGTATCCCAGGTCAGCATCAGTCACCCAGGGGAGAAGCACAGGGCTCCATCGAGCTCTGGTTACTCCCTGACCTCAGTGGCAGCAGGGAATGGCGTATCCCAGGTCAGCAGCAGTCATGCCTGGGAAAAGCACAGAGCTCCATCTCCATTAAGCCATGATCATTCCCTGAGCTCTGTGGTAGCAGAGAGTAGGTCTTCCAGGGTCAGATCTGGTGATGGTGCTGAGGTGGACTTCCGGGTCAGCCGTTACACCTGGGAGAAGAAGAACAGGGCAGCTCCATCAAGCGCTGATCAATCTCTGTCAAGTTCTGTGGCAGGAGGGAGTGGGGCTTCTACAATAAATCAATCCTTGGAAAAGCACTGCAGTGCAGCTCCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCACTCCATCAAGCTCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCGGCAGCAGTCACACATTAGAGAAGTACATCACTCCGTCAAGCTCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATTCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGTTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGAGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATCAATCTCTGTCAAGCCCAGTGGCAGCAGGAACTTCCAAGGTCAGCTCAGGTGGTGATGTTGACATGGAAGAGGAGTCCACGTGGGTGGACACAAACCTATTTCTTTACATTCAGAGATTTTCTAAAGACCAGTTTGACCAATGCTTTAGGAACCACGGTGTGTCAGCTGTGTTCGGTGACAATGACGTGGCCGACCTGACTCTGATATCGCTGAGAGGAGGACGCGACAGCAAGGGTCTCTCTGAAGTCCAACTGACCATATCAGAGCTGACTTATTTGGTCGCTGTGTGGCAGTCAACCCTGAGAATCCACACGATAGACTACAGAAGGCAGGACCTGCGTGAGAGACAGAGGCTGCTGCAGATCTGTGCCGAGGTGAACACCCTTTATGAAGACGTTCTGTACGTGCAGAAGGAGCTCGGTGTCCGGGTCATCGGTCCCTCTATTTCCAGTCATCTCTTTACTGAGTGGGTGAAGGATCGAATGGATCAACCGCATAAAGAGGACTTCTTGTAGTGGTGGTCAGAATGTGGATCATTTTACCGTTCTGCAATAGCAGCTAGTGCACGAAGAGCTTTTTTGCGCGGTATATATTGATAGCACTGTGAGATGTTTTCAAGAGATTTCTGTGACAACTAACTAGAATTGAGTTTGTGTTATTTGCTGTGTCTCAACAAGGATGCTGTTTTGTGTCAAGCTAGCCATGAGGGCATAACGAGATAATAGACTAGAAACTACATGTTAATGAGTCAACACTAGAGGGTGCTGTTGTACCGAATATACACAATTTGTTCCATTAAATAAATTATTTCTGTGTCCT
>XM_036951655.1
CGTATCCTTACGTATCCACCAATCCACAGAACGGATAGGCGGGAGCTAGACAGCCCGCGGTGGCGCGTTGGGCGGAGAGACCTGTAATTATCTTGTTATGCAGCGATCAAAACAACTGGGACTTCAGTGAGTTTTAAACAAGATCACTGACCTCATGATTTGATATCGTATTTTTCAGAgatcccagttgttttgaactcggCATCAGTATGTCTATAATTATTGAGTAGACGCAGGTCTAGCATCCGCGTATCCACCTGAAATCCATAAAGcagaaatgctaaactgaccttagatcaggcATTCTACTCCGATTCACACATCGAAACCGAAACAAGGTGATGAACCTCTCAGAGGAGAACAGGACGGTCGTGGTCTCTGGTGTACCAGACACACTGTCCAGCAGCCGCATGGCAGACAAACTGGTTATTCACTTCCAGAGCTCCAGAAGCCACGGAGGAGATGTAGAAAACATCAAGTACCCGACCAGCTTCAAGGGGGTGGCTTTTGTTACATTTGAAAACACCAGAGATGCTGAGATGGTAATCAGAAAGAAGCAGATAATGTGTGACAAGGAGTTCCCTCAAGACTACCCTATCACTGTCTTCAAATTCACCCAAGACGTGTTGTTCTACGTGAACGCTAAAGTGGACCTGTCAATCTTCGGTGACGAGGAACAGCAGGAGACCGTGATCCAAAGCTTGCAGTCTGCTCACAGATCAGTGAGGATCTGCCTTCTACCCAGCCAGGAGGGTAAAGCTTCAGTGGAGGGACCCTTCTCTGCCATCAGGGACCTGAGAGAGGACCTGCTCCAGCAGGCCACTGCCAGCAGCAGCGGTCACCCAGGGGAGAAGCACGGGGCTCCATGGAGCTCTGGTTACTCCCTGACCTCAGTGGCAGCAGGGAATGGGGTATCCCAGGTCAGCATCAGTCACCCAGGGGAGAAGCACAGGGCTCCATCGAGCTCTGGTTACTCCCTGACCTCAGTGGCAGCAGGGAATGGCGTATCCCAGGTCAGCAGCAGTCATGCCTGGGAAAAGCACAGAGCTCCATCTCCATTAAGCCATGATCATTCCCTGAGCTCTGTGGTAGCAGAGAGTAGGTCTTCCAGGGTCAGATCTGGTGATGGTGCTGAGGTGGACTTCCGGGTCAGCCGTTACACCTGGGAGAAGAAGAACAGGGCAGCTCCATCAAGCGCTGATCAATCTCTGTCAAGTTCTGTGGCAGGAGGGAGTGGGGCTTCTACAATAAATCAATCCTTGGAAAAGCACTGCAGTGCAGCTCCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCACTCCATCAAGCTCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCGGCAGCAGTCACACATTAGAGAAGTACATCACTCCGTCAAGCTCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATTCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGTTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGAGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATCAATCTCTGTCAAGCCCAGTGGCAGCAGGAACTTCCAAGGTCAGCTCAGGTGGTGATGTTGACATGGAAGAGGAGTCCACGTGGGTGGACACAAACCTATTTCTTTACATTCAGAGATTTTCTAAAGACCAGTTTGACCAATGCTTTAGGAACCACGGTGTGTCAGCTGTGTTCGGTGACAATGACGTGGCCGACCTGACTCTGATATCGCTGAGAGGAGGACGCGACAGCAAGGGTCTCTCTGAAGTCCAACTGACCATATCAGAGCTGACTTATTTGGTCGCTGTGTGGCAGTCAACCCTGAGAATCCACACGATAGACTACAGAAGGCAGGACCTGCGTGAGAGACAGAGGCTGCTGCAGATCTGTGCCGAGGTGAACACCCTTTATGAAGACGTTCTGTACGTGCAGAAGGAGCTCGGTGTCCGGGTCATCGGTCCCTCTATTTCCAGTCATCTCTTTACTGAGTGGGTGAAGGATCGAATGGATCAACCGCATAAAGAGGACTTCTTGTAGTGGTGGTCAGAATGTGGATCATTTTACCGTTCTGCAATAGCAGCTAGTGCACGAAGAGCTTTTTTGCGCGGTATATATTGATAGCACTGTGAGATGTTTTCAAGAGATTTCTGTGACAACTAACTAGAATTGAGTTTGTGTTATTTGCTGTGTCTCAACAAGGATGCTGTTTTGTGTCAAGCTAGCCATGAGGGCATAACGAGATAATAGACTAGAAACTACATGTTAATGAGTCAACACTAGAGGGTGCTGTTGTACCGAATATACACAATTTGTTCCATTAAATAAATTATTTCTGTGTCCT
>XM_036951656.1
AAACAAGGTAAATGCGTTTGGTTTTTATATTGTCAATGGCAGTCGACATATACTACATCTCGCTCTGAGTTGAAATTAGTGTTGTTTAAACTGAAACGGGTGATGAACCTCTCAGAGGAGAACAGGACGGTCGTGGTCTCTGGTGTACCAGACACACTGTCCAGCAGCCGCATGGCAGACAAACTGGTTATTCACTTCCAGAGCTCCAGAAGCCACGGAGGAGATGTAGAAAACATCAAGTACCCGACCAGCTTCAAGGGGGTGGCTTTTGTTACATTTGAAAACACCAGAGATGCTGAGATGGTAATCAGAAAGAAGCAGATAATGTGTGACAAGGAGTTCCCTCAAGACTACCCTATCACTGTCTTCAAATTCACCCAAGACGTGTTGTTCTACGTGAACGCTAAAGTGGACCTGTCAATCTTCGGTGACGAGGAACAGCAGGAGACCGTGATCCAAAGCTTGCAGTCTGCTCACAGATCAGTGAGGATCTGCCTTCTACCCAGCCAGGAGGGTAAAGCTTCAGTGGAGGGACCCTTCTCTGCCATCAGGGACCTGAGAGAGGACCTGCTCCAGCAGGCCACTGCCAGCAGCAGCGGTCACCCAGGGGAGAAGCACGGGGCTCCATGGAGCTCTGGTTACTCCCTGACCTCAGTGGCAGCAGGGAATGGGGTATCCCAGGTCAGCATCAGTCACCCAGGGGAGAAGCACAGGGCTCCATCGAGCTCTGGTTACTCCCTGACCTCAGTGGCAGCAGGGAATGGCGTATCCCAGGTCAGCAGCAGTCATGCCTGGGAAAAGCACAGAGCTCCATCTCCATTAAGCCATGATCATTCCCTGAGCTCTGTGGTAGCAGAGAGTAGGTCTTCCAGGGTCAGATCTGGTGATGGTGCTGAGGTGGACTTCCGGGTCAGCCGTTACACCTGGGAGAAGAAGAACAGGGCAGCTCCATCAAGCGCTGATCAATCTCTGTCAAGTTCTGTGGCAGGAGGGAGTGGGGCTTCTACAATAAATCAATCCTTGGAAAAGCACTGCAGTGCAGCTCCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCACTCCATCAAGCTCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCATCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCGGCAGCAGTCACACATTAGAGAAGTACATCACTCCGTCAAGCTCTGATCAATCTCTGAGCTCCATGGCATCAGGGAGTGGGGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATTCTCTGAGCTCCATGGCACCAGGGAGTGGGGAATCCAAGTTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCGCTGATCAATCTCTGAGCTCCATGGCACCAGGGAGTGGAGAATCCAAGGTCCTCAGCAGCAGTCACACATTAGAGAAGTACATCGCTCCATCAAGCTCTGATCAATCTCTGTCAAGCCCAGTGGCAGCAGGAACTTCCAAGGTCAGCTCAGGTGGTGATGTTGACATGGAAGAGGAGTCCACGTGGGTGGACACAAACCTATTTCTTTACATTCAGAGATTTTCTAAAGACCAGTTTGACCAATGCTTTAGGAACCACGGTGTGTCAGCTGTGTTCGGTGACAATGACGTGGCCGACCTGACTCTGATATCGCTGAGAGGAGGACGCGACAGCAAGGGTCTCTCTGAAGTCCAACTGACCATATCAGAGCTGACTTATTTGGTCGCTGTGTGGCAGTCAACCCTGAGAATCCACACGATAGACTACAGAAGGCAGGACCTGCGTGAGAGACAGAGGCTGCTGCAGATCTGTGCCGAGGTGAACACCCTTTATGAAGACGTTCTGTACGTGCAGAAGGAGCTCGGTGTCCGGGTCATCGGTCCCTCTATTTCCAGTCATCTCTTTACTGAGTGGGTGAAGGATCGAATGGATCAACCGCATAAAGAGGACTTCTTGTAGTGGTGGTCAGAATGTGGATCATTTTACCGTTCTGCAATAGCAGCTAGTGCACGAAGAGCTTTTTTGCGCGGTATATATTGATAGCACTGTGAGATGTTTTCAAGAGATTTCTGTGACAACTAACTAGAATTGAGTTTGTGTTATTTGCTGTGTCTCAACAAGGATGCTGTTTTGTGTCAAGCTAGCCATGAGGGCATAACGAGATAATAGACTAGAAACTACATGTTAATGAGTCAACACTAGAGGGTGCTGTTGTACCGAATATACACAATTTGTTCCATTAAATAAATTATTTCTGTGTCCT
>TU1732757
GGGACTTCAGTGAGTTTTAAACAAGATCACTGACCTCATGATTTGATATCGTATTTTTCAGAgatcccagttgttttgaactcggCATCAGTATGTCTATAATTATTGAGTAGACGCAGGTCTAGCATCCGCGTATCCACCTGAAATCCATAAAGcagaaatgctaaactgaccttagatcaggcATTCTACTCCGATTCACACATCGAAACCGAAACAAGGTGATGAACCTCTCAGAGGAGAACAGGACGGTCGTGGTCTCTGGTGTACCAGACACACTGTCCAGCAGCCGCATGGCAGACAAACTGGTTATTCACTTCCAGAGCTCCAGAAGCCACGGAGGAGATGTAGAAAACATCAAGTACCCGACCAGCTTCAAGGGGGTGGCTTTTGTTACATTTGAAAACACCAGAGATGCTGAGATGGTAATCAGAAAGAAGCAGATAATGTGTGACAAGGAGTTCCCTCAAGACTACCCTATCACTGTCTTCAAATTCACCCAAGACGTGTTGTTCTACGTGAACGCTAAAGTGGACCTGTCAATCTTCGGTGACGAGGAACAGCAGGAGACCGTGATCCAAAGCTTGCAGTCTGCTCACAGATCAGTGAGGATCTGCCTTCTACCCAGCCAGGAGGGTAAAGCTTCAGTGGAGGGACCCTTCTCTGCCATCAGGGACCTGAGAGAG

Function

NR:

description
RNA-binding protein 43-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951657.1 False 2833 mRNA 0.50 4 8677497 8682383
XM_036951655.1 False 2976 mRNA 0.50 4 8678331 8682383
XM_036951656.1 False 2737 mRNA 0.50 4 8678662 8682383
TU1732757 True 686 TUCP 0.47 4 8678448 8680210

Neighbor

gene id symbol gene type direction distance location
LOC110495394 LOC106574832 coding upstream 871 8623967 ~ 8676626 (+)
LOC118936321 LOC106575888 coding upstream 166301 8506139 ~ 8511196 (+)
LOC110528849 LOC105022557 coding upstream 171243 8498352 ~ 8506254 (+)
LOC110528836 chsta coding upstream 198136 8475052 ~ 8479361 (+)
LOC118941085 LOC106575914 coding upstream 204825 8469399 ~ 8472672 (+)
LOC110495396 rnd3 coding downstream 36091 8718474 ~ 8744053 (+)
LOC110495389 mmadhc coding downstream 141146 8823529 ~ 8835425 (+)
LOC118941058 NA coding downstream 165607 8847990 ~ 8852444 (+)
LOC110495382 orc4 coding downstream 246550 8928933 ~ 8933881 (+)
hsf2bp hsf2bp coding downstream 252812 8935195 ~ 8947637 (+)
G1514294 NA non-coding upstream 53914 8623024 ~ 8623583 (+)
G1514293 NA non-coding upstream 54722 8622463 ~ 8622775 (+)
G1514292 NA non-coding upstream 55369 8621898 ~ 8622128 (+)
G1514291 NA non-coding upstream 57292 8619974 ~ 8620205 (+)
G1514312 NA non-coding downstream 40823 8723206 ~ 8724789 (+)
G1514316 NA non-coding downstream 45382 8727765 ~ 8729055 (+)
G1514867 NA non-coding downstream 63222 8745605 ~ 8745807 (+)
G1514869 NA non-coding downstream 63844 8746227 ~ 8747165 (+)
G1514881 NA non-coding downstream 79922 8762305 ~ 8762573 (+)
G1514274 NA other upstream 100672 8576493 ~ 8576825 (+)
G1514180 NA other upstream 264698 8347227 ~ 8412799 (+)
G1514045 LOC106574979 other upstream 662467 8013860 ~ 8015030 (+)
G1515005 cbs other downstream 318015 9000398 ~ 9003126 (+)
G1515776 NA other downstream 1292145 9974528 ~ 9975306 (+)
G1515853 NA other downstream 1487719 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1636927 10310107 ~ 10327138 (+)
G1516637 NA other downstream 2334382 11016765 ~ 11017089 (+)

Expression


Co-expression Network