LOC110495396 (rnd3)


Basic Information

Item Value
gene id LOC110495396
gene name rnd3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8718474 ~ 8744053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951659.1
CATAGCCCTGCAACACTTTCAGcacgtggagagagaggggagggacaaCTCCACTGGCTCATGGTCTCGGTATAAATACCGTCAAAAAGTCTCGTTCGCGTTGTAGTCGACACCAGACACAGTACTGACAAAGGACGCAGACATCAGAGAGGAGAAACGGATTTATTACGCTCCGAGTATCTGCTGTTTTCTgttattcatgtgtgtgtgtgtgtgtgctctcttcAAACAACGTGGAGCTCTCTATAGCGAACTGTCCGTCAACTTACATCAATGAAGGAGAGAATATCTAGTCAGAAAGTATCTGTTCAGTCCGGGATGGATCCTAGTCAGATTGTGAAGTGTAAAATAGTTGTGGTCGGGGACAGTCAATGTGGGAAGACTGCTCTACTACACGTTTTTGCAAAGGATATCTTCCCAGAGAGTTACATGCCCACAGTGTTCGAGAATTACACGGCCAGTTTTGAAATAGACACGAAAAGAATAGAGCTCAGCCTATGGGACACGTCAGGGTCTCCATACTACGACAACGTGAGGCCTCTCTCCTACCCAGACTCAGACGCTGTCCTTATCTGTTTTGACGTCAGCCGTCCTGACACACTCGACAGCGTAATAAAGAAGTGGAAAGGGGAGATCCAGGAGTTCTGTCCCAACACCAAGATGCTCCTGGTGGGCTGCAAATCGGACCTGCGCACCGACCTCTCCACGCTGGTGGAGCTGTCCAATCACAGACAGATGCCTGTGTCATATGATCAGGGTTCCAACATGGCCAAACAGATCTCAGCCCCCTACATCGAGTGCTCAGCCCAGCAGTCAGAGAACAGCGTCAGGGACATTTTCCACGTGGCCACCTTGGCCTGCGTCAACAAGAACAACAAGAACGTCAAACGCAACAAATCTACCAGAGGCAACAAAAGGATCTCGCACATGCCCACTAGGCCCGACCTCGCGGCGGTAGCGTCAGACCTGCGGAAGGACAAAGCAAAGAGTTGCTGTGTCATGTGACCTGGTGGGCAGGGTCACGACCCTCGGGAGTGGGTTTGCAGGCTGGGATTGAAGCATGCAGTGAGGacaggggttaaaggtcagagcATAGTGCATTTTGGAACATTAGAGGGTGAGGCCCTTCCCTTCCTGCACTTTAAAGCCCTTGGCCTGCTGTCCTGGGGTGGAGTTTTGTATATGCATCATACAATGTAAATGTAGATGAAATCCACCGTATCAATGACAACACAATAGTCTTTCAGTGTAGCCTGTCTATCTACCATCCATTTCCCTTACATATCTTTTACCAGAAGAGGAAGCTATCTCTGCTTTGGGCCAATTAGCTGCCTTCCTTCCGGCGGCTTCCCGGGAGGTAGTAACACTGTTTCCTCTTAGAGCTGGACGAGGAAGTGGTCATGGCCTTTCACAGGAAATTACCATTTCCACAGGAAGTGGTGTCACGTAGGAAAAGTTGAACGAGTCCCGGACGTTTTTCTAAGGACTTCAGAAAGGATGTCCACGCTGTACATGATGATTGGCTCAACCCCCGTCTAATACAGCTGACTCCATCACCATGAGAGACTGCAGCGGTGCACTCTGGAACGCTGAAGACGAGCGGCCATCTTGCACTGGATCAAAGACCTGGAAGTGACATGACACTGCGCACGCAGCACATCACTGTGGTTTCCATCAGCTTGTTTGTTTCTCTTCCCCCTTCTTGTGGTTGCAAGTCAAGTGTTTCCTGACCTAATAGTCCCGTTGTTCCAGTCATGTCTTTCCTGTATTTTGTAGAATTTACTGTAAGCCCATATCATTTAAATCAATGACCGTTGACATCCTAGGACTGATCTGTTTGGCGTAATGATAGACATTGTATGATGCTGAACAGTTTATGGACATGTCCTTTCAGCTATGCAACACCTTCTGCTCTCAGCAAGGGAGGGGAATGAAATAAACAAATGAAGCAATGACTTTGGTTGAAGGACGTTGTTCACTGGATATGTCTAAAGTATAAATGCACTTTTTAAAGATCAAGGCTTCGCTAAAAAGCGAATTCTGGTATATTCCAATGCCTTTATTAAACTCGCGATGCTTTTCAAAATTTTCAGAACAGCTTCTCCTAGAGCAGTATCATCAGCTAGCCTGCTAATGCTATCTGTTTCAGAACAGCTTCTCCTAGAGCAGTGTCATCAGCTAGCCTGCTAATGCTATCTGTTTCAGAACAGCTTCTCCTAGAGCAGTATCATCAGCTAGCCTGCTAATGCTATCTGTTTCAGAACAGCTTCTCCTAGAGCAGTGTCATTAGCTAGCCTGCTAATGCTATCTGTTTCAGAACAGCTTCTCCTAGAGCAGTATCATCAGCTAGCCTGCTAATGCTTTCTGTTTCAGAACAGCTTATCCTAGAGCAGTATCATCAGCTAGCCTGCTAATGCTATCTGTTTCAGAACAGCTTCTCCTAGAGCAGTATCATCAGCTAGCCTGCTAATGCTTTCTGTTTCAGAACAGCTTATCCTAGAGCAGTATCATCAACTAGCCTGCTAATGCTATCTGTTTCAGAACAGCTTCTCCTAGAGCAGTATCATCAGCTAGCCTGCTAATGCTATCTGTTTCAGAAATGAATGAAAAGAAAGAAACGGTTGTTTGTTGTGTAAAGTGTTTTGTCATTAGGTCATCCTCCCCCTTTCTTTAATGTAACTGTTATGTCTGTGTCCCATTGTTGTTGCTACAATATTTATTGAATTATATATTTTCCCTTTCAAATAAAAGCAAAATTATGAAAAAAAA

Function

symbol description
rnd3 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Located in focal adhesion.

NR:

description
rho-related GTP-binding protein RhoE-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07859 RND3; Rho family GTPase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951659.1 True 2769 mRNA 0.46 5 8718474 8744053

Neighbor

gene id symbol gene type direction distance location
LOC110495395 LOC106574852 coding upstream 36091 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 coding upstream 41848 8623967 ~ 8676626 (+)
LOC118936321 LOC106575888 coding upstream 207278 8506139 ~ 8511196 (+)
LOC110528849 LOC105022557 coding upstream 212220 8498352 ~ 8506254 (+)
LOC110528836 chsta coding upstream 239113 8475052 ~ 8479361 (+)
LOC110495389 mmadhc coding downstream 79476 8823529 ~ 8835425 (+)
LOC118941058 NA coding downstream 103937 8847990 ~ 8852444 (+)
LOC110495382 orc4 coding downstream 184880 8928933 ~ 8933881 (+)
hsf2bp hsf2bp coding downstream 191142 8935195 ~ 8947637 (+)
LOC110496912 NA coding downstream 204808 8948861 ~ 8950192 (+)
G1514294 NA non-coding upstream 94891 8623024 ~ 8623583 (+)
G1514293 NA non-coding upstream 95699 8622463 ~ 8622775 (+)
G1514292 NA non-coding upstream 96346 8621898 ~ 8622128 (+)
G1514291 NA non-coding upstream 98269 8619974 ~ 8620205 (+)
G1514867 NA non-coding downstream 1552 8745605 ~ 8745807 (+)
G1514869 NA non-coding downstream 2174 8746227 ~ 8747165 (+)
G1514881 NA non-coding downstream 18252 8762305 ~ 8762573 (+)
G1514886 NA non-coding downstream 31766 8775819 ~ 8776117 (+)
G1514899 NA non-coding downstream 48888 8792941 ~ 8820180 (+)
G1514274 NA other upstream 141649 8576493 ~ 8576825 (+)
G1514180 NA other upstream 305675 8347227 ~ 8412799 (+)
G1515005 cbs other downstream 256345 9000398 ~ 9003126 (+)
G1515776 NA other downstream 1230475 9974528 ~ 9975306 (+)
G1515853 NA other downstream 1426049 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1575257 10310107 ~ 10327138 (+)
G1516637 NA other downstream 2272712 11016765 ~ 11017089 (+)

Expression


Co-expression Network