LOC118941058


Basic Information

Item Value
gene id LOC118941058
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8847990 ~ 8852444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951400.1
AAGACACTGTTGAGGGAAATCAATCAGTGAATAAAATATTGAAGGTAAACATCCTCAGAGttggagagagacagcgacagagagaaagaaagagatggattGAGAGAGATCGATCAGTACATCCGGAGTAGGTGATCAGTTGTCTGTATCTCACTCATGCTGTTGTGTGCGTTGTGCTTTGCTTCATTAGCTAAATGTCATCCAGACCCCGACTCAGATGGCATCCAGTAACTAACCCTATAGTGAATCCCATGAAGCTAGGATCACAGTCTACATACAGTGAGTGGATTGATGAAGGCTTTTCTCAGGTTGCTTGAACGAGTAAGAGAGCTCCAGCTCTAGGTCAGGCTCCTGGCCCCCACCGGTCACACAGCGACCCAGAGAGGATGGCTCAGTCATGGGGAAGTCATGTTAAGTAAGCCAAAGCTCTACAGCTAAATAACCAGTCAGATTATCGGATGTTCATGTTGTTAATCCCTGACTCTGTAAGACAATGAGAGGAGCTGGACAAAAAGAAGACCAACTAGATTAGAGATGGAATGTCCATTTTGTTTTCCTATGATATACAGCCTGACTACCAGCCCAGGCCAGAGAGGACAATGGTGGGTCTGCCTGGAGGGAGACTGGTGTCTGCCCCACTAAAGACCATATTTACTTCCATACCAGTGAGCCTGGTAAATGGGACCAGTACCCATGACAAAGCCCCCGATGCTGAACTCTCTATGGGTTCAGACCAGGGACAGATAATgagcctcctctccttctccatgacTCTGGATGCACAGACTCAACTTGGTTCTACAATGTATGGGCCAATGGCAGGGGTTCAATTACTCAATCCCAGGTAGAGGGAGCAATACTGATACGGTTGGAATTTTACACCTTGCAGAGATAAGATATTGATGGACTTTATTAATCCACTTTCTGCCGAAAACTGAaactttttttgcagtattacaaaGCCCTCCTTTACCTCCATTTAACGCCTGGTAATGTgagccattttttttttgtataattaATTTATTCACACAATTTACTATGCTAAGTAGTCTTATCCCATATCAGAAAGATAATCAATATTCATGGATTGAACTTCAAACAAACTCTCCAATCTCTAATAAGAAGCCTTGGTGTGCATCATTATTCAATAAAGTAGCTTGAATAAAGCACACTAGCAAAAAGCTAGAGGATGACCAGGTCTAGCCAGCCTTGGCTTGAACATGACGTCAGATTTATAAGATTGTATTTCTGCCTGCTGCACTTCATGACGACGGTACGGTTGTATTTTTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACAGTACGGTTGTATTTTTGCCTGCTGTCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGTCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGTCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGTCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGTCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGTCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGTCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGCCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGTCCTTCATGACGACGGTACGGTTGTATTTCTGCCTGCTGTCCTTCATGACGACAGGCCAGGTGGGAAAGGTGATCCTGAACCAGGACTCCTGTCCTCCTGTGCTAGGACCAGGTGGGAAAGGTGATCCTGAACCAGGCAACGTGATGTTCCAGGTCAAACAGGGAACAACAATCCTCTGTGAATGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105905082

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951400.1 True 2266 mRNA 0.47 3 8847990 8852444

Neighbor

gene id symbol gene type direction distance location
LOC110495389 mmadhc coding upstream 12565 8823529 ~ 8835425 (+)
LOC110495396 rnd3 coding upstream 103937 8718474 ~ 8744053 (+)
LOC110495395 LOC106574852 coding upstream 165607 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 coding upstream 171364 8623967 ~ 8676626 (+)
LOC118936321 LOC106575888 coding upstream 336794 8506139 ~ 8511196 (+)
LOC110495382 orc4 coding downstream 76489 8928933 ~ 8933881 (+)
hsf2bp hsf2bp coding downstream 82751 8935195 ~ 8947637 (+)
LOC110496912 NA coding downstream 96417 8948861 ~ 8950192 (+)
LOC110496974 LOC106574764 coding downstream 97932 8950376 ~ 8968786 (+)
LOC110527296 LOC106575803 coding downstream 170672 9023116 ~ 9030662 (+)
G1514911 NA non-coding upstream 3364 8842854 ~ 8844626 (+)
G1514910 NA non-coding upstream 5242 8842449 ~ 8842748 (+)
G1514899 NA non-coding upstream 27810 8792941 ~ 8820180 (+)
G1514886 NA non-coding upstream 71873 8775819 ~ 8776117 (+)
G1514881 NA non-coding upstream 85417 8762305 ~ 8762573 (+)
G1514920 NA non-coding downstream 10884 8863328 ~ 8863596 (+)
G1514947 NA non-coding downstream 16397 8868841 ~ 8869119 (+)
G1514949 NA non-coding downstream 17698 8870142 ~ 8870829 (+)
G1514951 NA non-coding downstream 19738 8872182 ~ 8873111 (+)
G1514955 NA non-coding downstream 24639 8877083 ~ 8877916 (+)
G1514274 NA other upstream 271165 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 343654 8498352 ~ 8506254 (+)
G1514180 NA other upstream 435191 8347227 ~ 8412799 (+)
G1515005 cbs other downstream 147954 9000398 ~ 9003126 (+)
G1515776 NA other downstream 1122084 9974528 ~ 9975306 (+)
G1515853 NA other downstream 1317658 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1466866 10310107 ~ 10327138 (+)
G1516637 NA other downstream 2164321 11016765 ~ 11017089 (+)

Expression


Co-expression Network