hsf2bp (hsf2bp)


Basic Information

Item Value
gene id hsf2bp
gene name hsf2bp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8935195 ~ 8947637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951672.1
ACGAGGAGCCATTTGGGAGCAAAATGAGCCGGCTCTTTTACCCGAACGGAGCCAAATGAGCCGGCTCTTTTACCTGAACGGAGCCAAATGAGCCGGCTCTTTTATCTGAACGGAGCCAAATGAGCCGACTCTTTTACCTGAACGGAGCCAAATGAGCCGACTCTTTTACCTGAACGGAGCCAAATGAGCCGGCTCTTTTACCTGAACGGAGCCAAATGAGCCGGCTCTGCTCACCGAAAAGACTCGGAATGCCCATCACTAGTGGCAAGTGCACTAAACTAATCTCAAAACAAACCTCAGAGGAATTAAACATGACTAAATTCATAGACACAAAGATGTGGGCTTTGTGCAAGAAAGGAAAGGTTGACAGCCGAGATGGCCTGGTCCAAATCAGAAAAAGAGACTTGGAGAGATTGACTACAGAGGTCATGCAGCTCCGAGAGTTCTTACCCAAAGTAGTGAATGGAGACCTGATTGAGATGCTGCAGAAAGCCCGTGCTGCAGAGACAAtgaaggAGCGCCTTGGTCAGGAGCAGGAGCAACTGAGACAGGAGTGTCTGCACCTCCGCTCTCGCCTGGACGCAGCGCAGAGCgagtgtcagaaagagagagagGAGAAGCTGGTTCTGAGGGAGCAGCTGTGGGAGAGTCGGGAGCAGCTGCAGCAGCAGGCTGAGTTCTGTACTGGGCTGGGGGCTGCCTCCTGCACCCTGCTGTGGAGCACCTCCAGTAAGGAGGAGGCAGTCAAAGACATCCTGGCTGATGGTAAGCTGCAGTCCTTCCTGAGCGTGGCGGGCCAGACCCTGGAGAGCTTTGTCAAGTCTCTGGATGGGGAGGCCAAGGCCGAGCAGCAAGACTCCAACTCCCATGAGCAGCAGTTTGTTCTGGCGCTGGCCGGAGTCGTCACCAACGTGGCGGCGGTGACGTGTGGGCGGGACTACCTGTCCAGCTCCGCCCACGTCCTCCTGGAGACTCTGATGCAGCAGCTGGAGCTCCTGAAGCCTGGGGTCTTCCCCAAACTCAAAGTGTTGATGCTGATGGCTCTGTATAATGTCAGTATCAGTGTAAAGGGACTGAAGTATATCAGGGAGTTTCCAggacttctctctctcatctggacCCTTTTGGAAGACGGGGACTCTGAGGTTTGCCTCCACGCCCTGCGGCTGCTCCAGTCAGTGCTGCTGGAGGAGGCCCTGGTGGGGCCCGGGCTGCTGCTGGACGACCCCCTTCTTCCACTGGAGCGCATACGCACGCTGGCCACCTCCAGCCGCCACCCGGCCCTGAGGCAGACGGCCCAGGAGACACTGGATGACCTGGGCTCCCTCCGCACCTCCTTCCTGGACCCCCATGGCACCTCCTCCTCTGACCAAGTACATGTATAAATACATCCAACCCAAAGTGAAACACACAGCACTAGCGACACATCCCACTcacgtgatgatgatgatgctttcCTACTGTAGAGTAAACGTTTCTCTGATTAGAGAGAGCTCTACTGAGGAGAGCTCCCATGATGCACTGTGGAAGAGGTTGGTTCCATCGTGTCCCTTTCTCGTTTTCCCCCGGGTCCAGGGACTTAGTCAGGTTGGTTCCTATCCCACCACAGCAGATGTTCTGGACCAGTAGAACCCCATAACTGTACATAAGGGCtccataacacattcataagccATATATAGAACATACATTAGAACTACAAAAATGGTGTATGTCAAATTAAAACGTGTTGACATGGTCCAAAGCAAGGATGACTTCTGCTTGCCATATGTTAAAGAGAAGCCGTCTGTTTGTTTAAAACATGTATCTACTGTTGTGAGGTGAGTTGGATCTGTTTCTACCTGTTAGCCTGTTGACCTAATACCAGCTAATACCATATCAGACTCATGGCCTTATTTCATTAGGTCAATTACCTTGAGGTCAAGTAACAATGGAGGATGTTTTAtttttgtgtgttgtgttctaCCATTGTTACAGACAATAAAATGTTGTTCAAAACTTT

Function

symbol description
hsf2bp Human ortholog(s) of this gene implicated in primary ovarian insufficiency 19. Orthologous to human HSF2BP (heat shock transcription factor 2 binding protein).

NR:

description
heat shock factor 2-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951672.1 True 2002 mRNA 0.52 8 8935195 8947637

Neighbor

gene id symbol gene type direction distance location
LOC110495382 orc4 coding upstream 1314 8928933 ~ 8933881 (+)
LOC118941058 NA coding upstream 82751 8847990 ~ 8852444 (+)
LOC110495389 mmadhc coding upstream 99770 8823529 ~ 8835425 (+)
LOC110495396 rnd3 coding upstream 191142 8718474 ~ 8744053 (+)
LOC110495395 LOC106574852 coding upstream 252812 8677497 ~ 8682383 (+)
LOC110496912 NA coding downstream 1224 8948861 ~ 8950192 (+)
LOC110496974 LOC106574764 coding downstream 2739 8950376 ~ 8968786 (+)
LOC110527296 LOC106575803 coding downstream 75479 9023116 ~ 9030662 (+)
LOC118941086 LOC106575849 coding downstream 147258 9094895 ~ 9100486 (+)
LOC118941059 LOC106595274 coding downstream 160599 9108236 ~ 9111483 (+)
G1514971 mbd5 non-coding upstream 16944 8918010 ~ 8918251 (+)
G1514968 NA non-coding upstream 23063 8910152 ~ 8912132 (+)
G1514967 NA non-coding upstream 26314 8907922 ~ 8908881 (+)
G1514955 NA non-coding upstream 57279 8877083 ~ 8877916 (+)
G1514951 NA non-coding upstream 62084 8872182 ~ 8873111 (+)
G1514996 NA non-coding downstream 37542 8985179 ~ 8987654 (+)
G1514998 NA non-coding downstream 42016 8989653 ~ 8990784 (+)
G1515006 NA non-coding downstream 55571 9003208 ~ 9004114 (+)
G1515044 NA non-coding downstream 133143 9080780 ~ 9081368 (+)
G1515058 NA non-coding downstream 150086 9097723 ~ 9116851 (+)
LOC110495394 LOC106574832 other upstream 258684 8623967 ~ 8676626 (+)
G1514274 NA other upstream 358370 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 430859 8498352 ~ 8506254 (+)
G1514180 NA other upstream 522396 8347227 ~ 8412799 (+)
G1515005 cbs other downstream 52761 9000398 ~ 9003126 (+)
G1515776 NA other downstream 1026891 9974528 ~ 9975306 (+)
G1515853 NA other downstream 1222465 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1371673 10310107 ~ 10327138 (+)
G1516637 NA other downstream 2069128 11016765 ~ 11017089 (+)

Expression


Co-expression Network