LOC110527263 (LOC106598167)


Basic Information

Item Value
gene id LOC110527263
gene name LOC106598167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9843565 ~ 9845412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608431.2
GTTGTGAAACGTCGTAGGTAAACTGTGGCCATCATCTTTTAGCTGTAAAAAGTGAATTTCTACTGGTGTGGGCGTTAAATAATGATAAGTAAACTGCTGGGTTGGTCTCCTTACTCTGAGTTCCCCTAGCCTCTGTCCCCCTATAGGCTGAGTCACTGCAGGATTAACCGAGCATGACCTCGTGACCCCATCTTCTCCCAGGACTGTTGACATCCATCTCTCAAAACAGTTGTCATGGTGACAGACACATTCTCACCCCCCCTAAAATGTGTATGTTAAATACAATACACAAATCATTAAGATCCATCTTCACAGCCTAAATAAATGAGCCAAGGACACAGCTGCACAAAATCAACAGCAAGAAGCATCCTGCTTATTCATCAGGATGGGGAATTTGAATAACAAAAAGCCATTTGAAATGGTATGAGGTATAAAAGCTTGAGTGAACATGGCCTATTGGACAACATCCCAGAGCCGCAGCAAACAAACACCATGGCCAAGATCATCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGACCAGCTCAGACTGCCCTGAGTTGACCTCCTACCTGAGCAGGTGCAACTCCTGCAGGGTGGAGAGCGGCTGCTTCATGGTGTACGACCGCTCCAACTTCCAGGGAAACCAGTACtttgtgaggagaggagagtatggTGACTACCAGCGGATGGGCATGTCTGACTCCGTTCGCTCTTGCCGTATGATCCCCATGCACAAAGGACAGTTCAGGATGCAGGTCTATGAGAGAGAGAACTTTGGGGGTCAGATGCACGAGCTGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGCATGTCCGACTGCCAGTCCTGCAACGTGATGGAGGGCCACTGGCTCATGTACGAGCAGCCCCACTTCAGAGGCAGGCAGATGTACGTGAGGCCTGGAGAGTACAGGAACCTCAGAGAGATGGGAAACAGCTCCGTGAACAGATACACCTCCATGAGACGTGTCCTGGATTCCTGCGAGAGCCAGCATCATTGAAGTCTGAGATTCTTATTTTTCTGGCATTCAAAATAAATATTGGATAATTGA

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608431.2 True 1086 mRNA 0.49 4 9843565 9845412

Neighbor

gene id symbol gene type direction distance location
LOC110527259 LOC106575807 coding upstream 78335 9742104 ~ 9765236 (+)
LOC110495570 LOC106573853 coding upstream 292570 9501508 ~ 9550995 (+)
LOC110495547 ptprn coding upstream 543922 9256574 ~ 9299643 (+)
LOC110497024 dnpep coding upstream 588160 9246827 ~ 9255405 (+)
LOC100653484 LOC106573841 coding upstream 683558 9134562 ~ 9160007 (+)
LOC110527266 LOC106595105 coding downstream 6041 9851453 ~ 9854072 (+)
LOC110497036 LOC106575870 coding downstream 11439 9856851 ~ 9859254 (+)
LOC110495578 LOC106575871 coding downstream 17970 9863382 ~ 9864362 (+)
LOC110495581 LOC106575873 coding downstream 29298 9874710 ~ 9875894 (+)
LOC110495584 LOC106574807 coding downstream 41963 9887375 ~ 9893235 (+)
G1515722 NA non-coding upstream 177 9843182 ~ 9843388 (+)
G1515699 NA non-coding upstream 35824 9806954 ~ 9807741 (+)
G1515697 NA non-coding upstream 36930 9805706 ~ 9806635 (+)
G1515694 NA non-coding upstream 45724 9797318 ~ 9797841 (+)
G1515693 NA non-coding upstream 46782 9796519 ~ 9796783 (+)
G1515750 NA non-coding downstream 70913 9916325 ~ 9916610 (+)
G1515751 NA non-coding downstream 74481 9919893 ~ 9920098 (+)
G1515754 NA non-coding downstream 77000 9922412 ~ 9922765 (+)
G1515771 NA non-coding downstream 108089 9953501 ~ 9959326 (+)
G1515773 NA non-coding downstream 114226 9959638 ~ 9959841 (+)
G1515005 cbs other upstream 840439 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 1163355 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 1167054 8623967 ~ 8676626 (+)
G1514274 NA other upstream 1266740 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 1339229 8498352 ~ 8506254 (+)
G1515776 NA other downstream 129116 9974528 ~ 9975306 (+)
G1515853 NA other downstream 324690 10170102 ~ 10171956 (+)
G1516136 NA other downstream 473898 10310107 ~ 10327138 (+)
G1516637 NA other downstream 1171353 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 1240673 10978682 ~ 11092554 (+)

Expression


Co-expression Network