LOC110497036 (LOC106575870)


Basic Information

Item Value
gene id LOC110497036
gene name LOC106575870
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9856851 ~ 9859254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951406.1
atgccatggggGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGATATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTATGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGTGATTCTGGAGCGGCCCCTGAGGCAGGAACACTTATGGACTTTCAAAGCATACTTTCTCTTTCTCCAGATCATCTTCTACGAGGACAGGAACTTCCAGGGCTGCTCCTATGAGTGCAGCAGCGACTGCTCCGAGCTCTCCTCCCACCTGAACAGGTGCAACTCCTGCAGGGTGGAGAGTGGCATGTTCATGGTGTACGACCGGCCCAACTAcatgggccaccagtacttcctgAGGAGGGGAGAGTACCCTGAGTACCAGCACATGTTAGGCTTCAACGACTGCATCAGGTCTTGTCGTATGATCCCCCAGCACATGGGCCAGTTCAGGATGAGGATCTACGAGAAGGAGAACTTCGGAGGCCAGATGCACGAGGTGATGGACGACTGTGACTCCATCCAGGAGCGTTACCATATGCCCGAGATGCAGTCCTGCAACGTGATGGACGGCCACTGGGTCATGTACGAGCAGCCCCAATTCAGAGGCATGCAGACCTACCTGAGGCCTGGAGAGTACAGGAACACGAGAGAGATGGGAATGGGAAATGATGAAATGAGGTTCCAGTCCATGAGGCGCATCAGCAGCGATGCTGCCTTTTAAATGTGCTGTCTTTAAAGAGTGC

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951406.1 True 943 mRNA 0.55 3 9856851 9859254

Neighbor

gene id symbol gene type direction distance location
LOC110527266 LOC106595105 coding upstream 2779 9851453 ~ 9854072 (+)
LOC110527263 LOC106598167 coding upstream 11439 9843565 ~ 9845412 (+)
LOC110527259 LOC106575807 coding upstream 91621 9742104 ~ 9765236 (+)
LOC110495570 LOC106573853 coding upstream 305856 9501508 ~ 9550995 (+)
LOC110495547 ptprn coding upstream 557208 9256574 ~ 9299643 (+)
LOC110495578 LOC106575871 coding downstream 4128 9863382 ~ 9864362 (+)
LOC110495581 LOC106575873 coding downstream 15456 9874710 ~ 9875894 (+)
LOC110495584 LOC106574807 coding downstream 28121 9887375 ~ 9893235 (+)
LOC118941061 NA coding downstream 259406 10118660 ~ 10121810 (+)
LOC110495585 LOC106574888 coding downstream 272276 10131530 ~ 10134128 (+)
G1515722 NA non-coding upstream 13463 9843182 ~ 9843388 (+)
G1515699 NA non-coding upstream 49110 9806954 ~ 9807741 (+)
G1515697 NA non-coding upstream 50216 9805706 ~ 9806635 (+)
G1515694 NA non-coding upstream 59010 9797318 ~ 9797841 (+)
G1515693 NA non-coding upstream 60068 9796519 ~ 9796783 (+)
G1515750 NA non-coding downstream 57071 9916325 ~ 9916610 (+)
G1515751 NA non-coding downstream 60639 9919893 ~ 9920098 (+)
G1515754 NA non-coding downstream 63158 9922412 ~ 9922765 (+)
G1515771 NA non-coding downstream 94247 9953501 ~ 9959326 (+)
G1515773 NA non-coding downstream 100384 9959638 ~ 9959841 (+)
G1515005 cbs other upstream 853725 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 1176641 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 1180340 8623967 ~ 8676626 (+)
G1514274 NA other upstream 1280026 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 1352515 8498352 ~ 8506254 (+)
G1515776 NA other downstream 115274 9974528 ~ 9975306 (+)
G1515853 NA other downstream 310848 10170102 ~ 10171956 (+)
G1516136 NA other downstream 460056 10310107 ~ 10327138 (+)
G1516637 NA other downstream 1157511 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 1226831 10978682 ~ 11092554 (+)

Expression


Co-expression Network