LOC110495581 (LOC106575873)


Basic Information

Item Value
gene id LOC110495581
gene name LOC106575873
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9874710 ~ 9875894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570905.2
AGAGGACGCACCTCCCAACCCTTGCTGAGTGCCAGTGAGACCAAAGTTAACCTTCGCAATGGGAAAGATCATTTTCTACGAAGACAGAAACTTCCAGGGTCACTCTTATGAGTGCGGTGGAGAATGCTCTGACCTACATGCCCACTTCAGCCGCTGCAACTCCATCAAGGTGGAGAGCGGCAACTGGATGGTGTACGAGAGGCCCAGCTACATGGGCTATCAGTACTTCCTGAAGGAAGGCGAGTTCTCCGACTACCAGCGTTGGATGGGCTTCAATGACTGCGTCAGGTCCTGCCGCATGATCCCCCAGCATCAGGGATCTCACCGTATGAGAATCTTCGAGCGCTCCGAGTTCGGAGGACAGATGACGGAGTTGACGGACGACTGCCCCAACCTCTACGAGCGCTTCCATTACAATGACGTCTACTCTTGCAATGTGATGGAGGGCTCCTGGCTTTTGTATGAGCACCCCAACTACAGGGGGCGCCAGTACCTGCTGACCCCGGGAGAGTACAGGAGATACAACGAGTGGGGAAGCATGAGCGCCAGAGTGGGTTCCATCAGACGTATTGATATGTAAGAAGCTGAATGTATGACTCTTGAATCAATGACCAACGGGAAATCATGTTGAAATAAATCCATCCACACATTA

Function

NR:

description
gamma-crystallin B-like

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570905.2 True 652 mRNA 0.52 3 9874710 9875894

Neighbor

gene id symbol gene type direction distance location
LOC110495578 LOC106575871 coding upstream 10348 9863382 ~ 9864362 (+)
LOC110497036 LOC106575870 coding upstream 15456 9856851 ~ 9859254 (+)
LOC110527266 LOC106595105 coding upstream 20638 9851453 ~ 9854072 (+)
LOC110527263 LOC106598167 coding upstream 29298 9843565 ~ 9845412 (+)
LOC110527259 LOC106575807 coding upstream 109480 9742104 ~ 9765236 (+)
LOC110495584 LOC106574807 coding downstream 11481 9887375 ~ 9893235 (+)
LOC118941061 NA coding downstream 242766 10118660 ~ 10121810 (+)
LOC110495585 LOC106574888 coding downstream 255636 10131530 ~ 10134128 (+)
LOC118941088 LOC106575836 coding downstream 271055 10146949 ~ 10149129 (+)
LOC118941089 LOC106574813 coding downstream 486676 10362570 ~ 10368578 (+)
G1515722 NA non-coding upstream 31322 9843182 ~ 9843388 (+)
G1515699 NA non-coding upstream 66969 9806954 ~ 9807741 (+)
G1515697 NA non-coding upstream 68075 9805706 ~ 9806635 (+)
G1515694 NA non-coding upstream 76869 9797318 ~ 9797841 (+)
G1515693 NA non-coding upstream 77927 9796519 ~ 9796783 (+)
G1515750 NA non-coding downstream 40431 9916325 ~ 9916610 (+)
G1515751 NA non-coding downstream 43999 9919893 ~ 9920098 (+)
G1515754 NA non-coding downstream 46518 9922412 ~ 9922765 (+)
G1515771 NA non-coding downstream 77607 9953501 ~ 9959326 (+)
G1515773 NA non-coding downstream 83744 9959638 ~ 9959841 (+)
G1515005 cbs other upstream 871584 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 1194500 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 1198199 8623967 ~ 8676626 (+)
G1514274 NA other upstream 1297885 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 1370374 8498352 ~ 8506254 (+)
G1515776 NA other downstream 98634 9974528 ~ 9975306 (+)
G1515853 NA other downstream 294208 10170102 ~ 10171956 (+)
G1516136 NA other downstream 443416 10310107 ~ 10327138 (+)
G1516637 NA other downstream 1140871 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 1210191 10978682 ~ 11092554 (+)

Expression


Co-expression Network