LOC110495585 (LOC106574888)


Basic Information

Item Value
gene id LOC110495585
gene name LOC106574888
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10131530 ~ 10134128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951768.1
TAAGGAATGATATTACCTTATGTGATAAGTAGGTTATGGGTAAAGAATGTACTGATTGAGTCGTTCAGGGTGTAAGCAGATTCCTATTGGAGAGGACGCAGCCCTGTGGGCGTGGCTGTCCAGAGTAAGCGGCCACGGTGTTGTTAGTCGATATGGTTAGGAGCCGGAGCAAGAAGACGCACGAGGGAAGACAGTCGTGGAGTGTAGGTTTTTTTCTGAGAATAGGAGGCTGTTTCACTAAATATTGTTGAAAGAAAAAGTGTGGCGCAAGGATTAGGCGTTGCTGCCTGAAAATTCCGTCTGCATTATCGAGTCGAAATGGACTTTATTTGATTGCACCGGAGGCGCGTTTCCTAAAGGTACACTGGGAGTGAATTTAGTGGTGGCAAGATCGCGCTTCTCTCTTTGATTGGCATTGCATATTGATGAGGTAGCTTACATTTTCCCGTGTGATCGACTTGCGTTGGAGGAGCTTCCATGGCGACCATGACGCACATCTGCCCTCTTTACATCAGCGTTCCGTGCCTACTCCTGCTGATGCGCGCACTACTGGTGCGCGCTGCCTCCAAGGCCATCGTGTGTGAACCCATCACGGTCCCCATGTGCAAGGGCATCGGCTACAACCTGACCTACACGCCCAACCAGTTTAACCACGACACTCAGGACGAGGTGGGGCTGGAGGTGCACCAGTTCTGGCCGCTGGTGCGcatccactgttcccctgacctGCTCTTCTTCCTCTGCAGCATGTACACCCCAATCTGCATCCCGGACTATCGCAAGCCTCTGCCCCCGTGCCGCTCCGTGTGCGAGCGGGCCAAGCGTGGCTGCTCCCCCCTGATGAGCCAGTATGGGTTTGAATGGCCCGAGAGGATGAGCTGCGAGGGGCTACCAGAGCTGGGTGATGCTGACCTCCTCTGTATGGACCGGAACAGCAGTGACGCCACTACTCTGTCCCCAGGCCCGGCCTTCCCCCCGAAGCCTACCCCCAAAGCCCCCTACCGCAACCCAGCCCGCCGCAGGCCGCATCTCCTGCCCAAACCCcaccacagtcaccaccaccaGGACTGTGAACAACGCGGCTGCCGCTGTCGCCACCCCCTGGTGTCCGTCAAGCATGAGGCCCGCTCACTGTACGGCCGCGGCGTCCACACAGGCCCCGTGGAGAACTGCGCCCAGCCCTGCCGTCAGCCCTACTTCACCCCAGACGAACACGCCTTCACCTCCCTCTGGATCGGCCTGTGGTCGGTCCTCTGCTTCGTCTCGACCCTAACTACGGTGGTCACGTTCCTGATTGACCGCGACCGCTTCTCCTACCCCGAGCTGCCTATCGTCTACCTGGCTGCCTgctacctcttcatctccctggGATACATGGTGCGGCTGGCGGCGGGCCACGAGCGTGTGGCGTGCTCCGAGGACGGCGGGCATGTGCTGTACGACGCTTCGGGCCCTGCCGGCCTGTGCACCTTGGTGTTCCTGCTGGTCTACTTCTTTGGCATGGCCGGCGCAATCTGGTGGGTGGTGCTCTCGCTCACCTGGTTCCTGGCGGCGGGTATGAAGTGGGGCAACGAGGCCATCGCCGGGTACTCGCAGTACTTCCACCTGGCCGCCTGGCTGGTGCCCAGCGTCAAGACCATCGCCGTGCTGGCCCTGAGCGCTGCTGACGGAGACCCTGTGGCAGGGATATGCTACGTGGGCAACCAGAGTGTGGAGAGCCTGCGGGGCTTCGTGCTTGCTCCCCTGGTGGTCTACCTCTTCACAGGCTCCCTCTTCCTCCTAGCGGGGTTTGTGTCGTTGTTCCGCATCCGCAGCGTCATCAAGCAGGGGGGGACCAAGACGGACAAGCTGGAGAAGCTGATGTTAAGGCTGGGCCTCTTTACCGTCCTCTACACGGTCCCTGCCGCGGTGGTGGTGGCCTGTCTGGTGTACGAGCAGCACCTCAGGCCCCAGTGGGACAGGGGTCTTTCCTGCTCCTgccaggctgagagagagaggctaggccTAGGGCCAGACCACGCCATCTTCATGCTGAAGTACTTTATGAGCCTGGTGGTGGGGATCACCTCGGGGGTGTGGGTGTGGTCGGGGAAGACTCTGGAGTCGTGGAGGTTGTTCCTGGGGAGGTGCTGTTGTTCATGTCCCTGCTGGGGCCACAAACCGTCCAGCGCGTCTGTATACAGCGAGGCCAGCACATCCCTCACGACACGCACCGGGCTGCTCCCCTCGCAGTCTGAGCACAAGTCCCTGTCGCACCCATCTGTGTGACCAGACTGGATGGAtgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactgga

Function

NR:

description
frizzled-5-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0021531 spinal cord radial glial cell differentiation biological_process
GO:0048794 swim bladder development biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0001889 liver development biological_process
GO:0007409 axonogenesis biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951768.1 True 2410 mRNA 0.60 2 10131530 10134128

Neighbor

gene id symbol gene type direction distance location
LOC118941061 NA coding upstream 9720 10118660 ~ 10121810 (+)
LOC110495584 LOC106574807 coding upstream 238295 9887375 ~ 9893235 (+)
LOC110495581 LOC106575873 coding upstream 255636 9874710 ~ 9875894 (+)
LOC110495578 LOC106575871 coding upstream 267168 9863382 ~ 9864362 (+)
LOC110497036 LOC106575870 coding upstream 272276 9856851 ~ 9859254 (+)
LOC118941088 LOC106575836 coding downstream 12821 10146949 ~ 10149129 (+)
LOC118941089 LOC106574813 coding downstream 228442 10362570 ~ 10368578 (+)
LOC110510737 LOC106575810 coding downstream 255500 10389628 ~ 10856330 (+)
LOC118941090 LOC106575811 coding downstream 722241 10856369 ~ 10862119 (+)
LOC110527277 LOC106575822 coding downstream 810275 10944403 ~ 10956829 (+)
G1515834 NA non-coding upstream 3018 10128259 ~ 10128512 (+)
G1515829 NA non-coding upstream 17654 10113609 ~ 10113876 (+)
G1515820 NA non-coding upstream 30806 10100350 ~ 10100724 (+)
G1515819 NA non-coding upstream 36792 10094404 ~ 10094738 (+)
G1515794 NA non-coding upstream 84296 10039133 ~ 10047234 (+)
G1515837 NA non-coding downstream 478 10134606 ~ 10137597 (+)
G1515841 NA non-coding downstream 4847 10138975 ~ 10139576 (+)
G1515846 NA non-coding downstream 22338 10156466 ~ 10157258 (+)
G1515854 NA non-coding downstream 33963 10168091 ~ 10168751 (+)
G1515855 NA non-coding downstream 42823 10176951 ~ 10177404 (+)
G1515776 NA other upstream 156224 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 1128404 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 1451320 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 1455019 8623967 ~ 8676626 (+)
G1514274 NA other upstream 1554705 8576493 ~ 8576825 (+)
G1515853 NA other downstream 35974 10170102 ~ 10171956 (+)
G1516136 NA other downstream 185182 10310107 ~ 10327138 (+)
G1516637 NA other downstream 882637 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 951957 10978682 ~ 11092554 (+)
G1517015 NA other downstream 1498939 11633067 ~ 11634979 (+)

Expression


Co-expression Network