LOC118941090 (LOC106575811)



Basic Information


Item Value
gene id LOC118941090
gene name LOC106575811
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10856369 ~ 10862119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_005037368.1
agggagctccaCTGGGAGGGGGGGTGGTAGTCATGGTGTGTGGTTTAAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGCAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGCAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGCAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGCAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGCAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGCAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGCAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACCCGTGGTTAAACTAAGCCCACTGACAGTCAgctagcctcctctctctctccccctgacaACTCTCAGTTCACCTCTATACAGCAATAGGATTACCAACTCCTCATTCTGAATCCAAAATGTCAAGGTCCAGAGATTTGACACTGAATCTTCTAGTGTGACTTCACCACAAGTCTCTCCGTTACTCTGAGACGAGGGCTACATGCAGATCAGTTGTCAAATCAGAAATGTAATTCATGACTTAAAATGGCTGTTTATTAATTAACTCAATTCAATTCTGAACTGACCCCAACCTTAATGTGAAGGGTATGACTAGTGCCAAatggaaacattttttttatgatatttaactaggcaagtcagttaagaacaaattcttatttacaatgacgacctactcTGACAACGCTGGTCCAATttgcgcctccctatgggactctcatTCATGGCAGGTTGTGATACTGCTTGGTCTGTAGGgacgcctttagcactgagatacagtgccttagaccgctgcgccactcgggcaGGACCAGTGATTACAAGTCATGTGTCACTGACCATTTAGAATAAATAGTGACTTAGGACAGTTACCTGTACTACTGATGCCTCATAAACACCTATGAGAATACTGCCAGACAGCTTCTGCTGCCTAGTGGAACGTCCAGGACCCCCGGTAAACTTCTGTTTCAGACTCATTTGGTTACACTGCTGTTATGGAGCCATGCATGTTCGTTTTTTCATTTCCTTCTCGATTTGCCTTTACTTTGTCTATATTTCGTCGTACAGCATAAGGAGGCTTATCCCAGCTGTCCTTGTGGCAGAGAAGAGGGTTATTGATACATGTTTCTGCTGcattgtgggtgtttgttttagTCCATATGGAGCACATTGATCCAACGAGCAGGaagtgaaaaatatttttttaaataacgtgTTTTTTCTTAGTTGTAATAATCCAACCACGTGATTATTTCAAatgcatttcacatttccaccTACAAGGTTGAGATATGTGaaggaacagaacagagagaaactTGGGGACACGGTGAAGTACTGAATGAGAAGTCTTCATATGTATGTGCTATTTGTCTGCTTCCTGCCGTTCTACTGCCTCTGGTTATGATGACAACTATTTTGTTCTGCCTTTGGACCCAAATAGTTCCGCAAACTGGAATTAACATTTCATTTCAATGTGAAGTATTCATGTTGTGTTTAACTTGTTTTTCACCAAGGACAGAAATGACAGATTGCAGATTCTATGATTTTCAAAACCAGTGAAAAACCAGTCTCTCTTTTTACGTGTTCATATTAGAAGGGCCTGTTTTGACCCTGAGCcagtcctaatatggacaccatagctGCCACACCACGTCTCTTTATCTACCAGAAAACGACATCTGTACTTGGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTCTCCTATACAGAATGTAGTTGGAAAGGTTTTGGCCCCTTGGTATTCTCCTATACAATATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTGAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCTTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTGGTATTCTCCTATACAATATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGTATTCTATGACACAATCAGCAGCACAAGTACTGTATCCTCCACCACTGCAGTAGAACTGTATTAGCTATGCCTGTTGTACCTAATACTATATCATCATGCATGATACCTCAATGTGAGTGTTATTGCTCTTTACCCTGAGTATTTGTTAGTTCAATTAATAGTATTTTCCATTTTTGTCCCGAGGAAAGATGGTTTGAGGGACAGCTTCTATTGCTGTTTGGAGATGGAAAGAAATCAGTAGCACAAATTCTGTAGTAACTTTCTGTTGTTAAGGTAAAACACACCATGGAAAAGGTTTAAGTGTTTAATACCTTACACCACTGTATACAGTTAATTCACAAACATACACTTACTGTTCAATATAGGATTCATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGAATAGGATTGATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAGAATAGGATTGATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGCATAGGATTCATCTTTACTGTCAAATATAGGATTCATCTTTACTGTTCAGTATAAGATTCATATTTACTGTCAAATATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATAGTCATCCTGGCTTCTACTGTTAATTTAGTCATATTTATCATGACCGATGTTTTGGTCTGTCACtgttttttaaaaactatttcaACATATTCAAAAATACTTCtgtttattttattgtgttgATGAAGTGTATTTAATAACATGAATGAGGGTTTTTACAGACGCAGCACACGTCACCTCATTCAGTATTATCTTCGGATGATATTTCAATACATCCTGATAATTTGACACAATCTTAATTGCATCTTAATTGCACAAATTGTCGTATTAGAGAGGACACATTCTTTCGGTTACATTTTTTGTGTTGAAATTGATATACCTATCAAACCAATGTAATTGTACAGTTGTTTGGACTTTCCTCCAGATTGAACACACTATTgtcccatgacaaaatgtgaatAGTATTTTTATAAAGCACAGAGACGAGGCGACCCGCTGACATGTGTCCATAGGAGGAGAATGCTTTGACCTTTTCCCACTCTTCTCTCTGTTTCACGTTCTTTTCTTTTCCTGTTCTTTTTCCCTTCTTGTCTGTTTATCAGGTGTCAGCGTTAGATATGACAGAGCTTCTGTGTGTACGGTATGTGTACTTTGGGTAgtacattttgatttgaaatgtaaaaCACCCTTGTTGGGTACTCGCCTGTGAAACTGGCTAGTTGACCTGTATGAAGCATCTCTCTGTGAGTTCTCTATTTAATATCTGTGTTGGGGTTAACAATGGTTcttttttacctctctctctctctctctctctctctctcactctctccctctctcaaaatacttcagagcagtgttgccaactcaaCCTGACAAGATATGTCTCAGCCCATTTTCTATTTCAGTGGTGTGCTATCCAGTCCATCTTTCTGCTTGTTTATCAGTCCAGTGTGCACATGTACATTCACCCCTGAGCCAACATTTTCCATGATTTCCATGTTCGAAGACATCAAGGTTGAATTGGAAGATGTAGAAATTGAGATCAATATCGTGAGGCACCTCccacttgactggcctgtacagtaCGTGAAGACAAACTACTAAAGTTATTTTGATGTAATGTTTGATTTAACTGCATGCTTATTTATAAATGTCGTCAAACACTGACAGAGACACAGTGTCCCTCCCTTTTTCCCGGTTCAGCCTCTCTAGCTCCTACTCCCTGCCTCCCCACAGAATGTTGGCAGCACTGGCTACAACTCTCCACTGAACTTTAGACCATACCTAAAGCTTGATATCATGGAAGTACTGTTCCTCATATTTGTTACATGAATctgtcaaaaaatatatttttaatttaataTAAATAAAGATTGATTCAATATTTGA
>TU1735780
agtatgtagttggaAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGTATTCTATGACACAATCAGCAGCACAAGTACTGTATCCTCCACCACTGCAGTAGAACTGTATTAGCTATGCCTGTTGTACCTAATACTATATCATCATGCATGATACCTCAATGTGAGTGTTATTGCTCTTTACCCTGAGTATTTGTTAGTTCAATTAATAGTATTTTCCATTTTTGTCCCGAGGAAAGATGGTTTGAGGGACAGCTTCTATTGCTGTTTGGAGATGGAAAGAAATCAGTAGCACAAATTCTGTAGTAACTTTCTGTTGTTAAGGTAAAACACACCATGGAAAAGGTTTAAGTGTTTAATACCTTACACCACTGTATACAGTTAATTCACAAACA
>TU1735775
TGGACTTTCCTCCAGATTGAACACACTATTgtcccatgacaaaatgtgaatAGTATTTTTATAAAGCACAGAGACGAGGCGACCCGCTGACATGTGTCCATAGGAGGAGAATGCTTTGACCTTTTCCCACTCTTCTCTCTGTTTCACGTTCTTTTCTTTTCCTGTTCTTTTTCCCTTCTTGTCTGTTTATCAGGTGTCAGCGTTAGATATGACAGAGCTTCTGTGTGTACGGTATGTGTACTTTGGGTAgtacattttgatttgaaatgtaaaaCACCCTTGTTGGGTACTCGCCTGTGAAACTGGCTAGTTGACCTGTATGAAGCATCTCTCTGTGAGTTCTCTATTTAATATCTGTGTTGGGGTTAACAATGGTTcttttttacctctctctctctctctctctctctctctcactctctccctctctcaaaatacttcagagcagtgttgccaactcaaCCTGACAAGATATGTCTCAGCCCATTTTCTATTTCAGTGGTGTGCTATCCAGTCCATCTTTCTGCTTGTTTATCAGTCCAGTGTGCACATGTACATTCACCCCTGAGCCAACATTTTCCATGATTTCCATGTTCGAAGACATCAAGGTTGAATTGGAAGATGTAGAAATTGAGATCAATATCGTGAGGCACCTCccacttgactggcctgtacagtaCGTGAAGACAAACTACTAAAGTTATTTTGATGTAATGTTTGATTTAACTGCATGCTTATTTATAAATGTCGTCAAACACTGACAGAGACACAGTGTCCCTCCCTTTTTCCCGGTTCAGCCTCTCTAGCTCCTACTCCCTGCCTCCCCACAGAATGTTGGCAGCACTGGCTACAACTCTCCACTGAACTTTAGACCATACCTAAAGCTTGATATCATGGAAGTACTGTTCCTCATATTTGTTACATGAATctgtc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005037368.1 False 5706 mRNA 0.38 2 10856369 10862119
TU1735780 False 497 lncRNA 0.37 1 10859337 10859833
TU1735775 True 933 lncRNA 0.42 1 10861137 10862069

Neighbor


gene id symbol gene type direction distance location
LOC110510737 LOC106575810 coding upstream 39 10389628 ~ 10856330 (+)
LOC118941089 LOC106574813 coding upstream 487791 10362570 ~ 10368578 (+)
LOC118941088 LOC106575836 coding upstream 707240 10146949 ~ 10149129 (+)
LOC110495585 LOC106574888 coding upstream 722241 10131530 ~ 10134128 (+)
LOC118941061 NA coding upstream 734559 10118660 ~ 10121810 (+)
LOC110527277 LOC106575822 coding downstream 82284 10944403 ~ 10956829 (+)
LOC118936256 LOC100194643 coding downstream 98625 10960744 ~ 10967479 (+)
LOC118941091 NA coding downstream 99666 10961785 ~ 10965666 (+)
LOC110527282 acadl coding downstream 111709 10973828 ~ 10979399 (+)
LOC118941092 LOC106575823 coding downstream 116563 10978682 ~ 11092554 (+)
G1516502 NA non-coding upstream 19129 10836918 ~ 10837240 (+)
G1516499 NA non-coding upstream 23296 10832544 ~ 10833073 (+)
G1516446 NA non-coding upstream 70185 10710031 ~ 10786184 (+)
G1516443 NA non-coding upstream 151108 10705018 ~ 10705261 (+)
G1516435 NA non-coding upstream 160651 10695518 ~ 10695718 (+)
G1516567 NA non-coding downstream 5166 10867285 ~ 10867629 (+)
G1516569 NA non-coding downstream 5897 10868016 ~ 10868225 (+)
G1516573 NA non-coding downstream 15446 10877565 ~ 10877791 (+)
G1516574 NA non-coding downstream 24123 10886242 ~ 10886456 (+)
G1516589 NA non-coding downstream 46156 10908275 ~ 10908498 (+)
G1516136 NA other upstream 529231 10310107 ~ 10327138 (+)
G1515853 NA other upstream 684413 10170102 ~ 10171956 (+)
G1515776 NA other upstream 881063 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 1853243 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 2176159 8677497 ~ 8682383 (+)
G1516637 NA other downstream 154646 11016765 ~ 11017089 (+)
G1517015 NA other downstream 770948 11633067 ~ 11634979 (+)
G1517019 NA other downstream 780670 11642789 ~ 11643758 (+)
G1517150 NA other downstream 1077943 11940062 ~ 11941897 (+)

Expression



Co-expression Network