LOC110527277 (LOC106575822)


Basic Information

Item Value
gene id LOC110527277
gene name LOC106575822
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10944403 ~ 10956829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951779.1
GCtcgaagtaaccaaaaaaggccTGTAATGCGGACTCCTTCACACCAGGTGGCCACACTGACGTTGTAAAGTCCATTCAACGTGTTTGTCAGTGAAGCGATCAAGAACATTATAAACATCAACCGTCTGCAGTGATTCCTTCTCGTTTGACCAAAAAACTTGAGTTTTAGTGGGAGCGGAGGGGAGTTGGAAGAAAATGGACCAGAGAGCTTGGAAGAACCCATACGCAGACTATGATGGGAACCCTGCATCTGTGCAAGAACTATTTGATTCACAAGGAAAGCTCACAGCAGAGTTTGCAGGGCGGTTGAGCAATGCCATCAGTCAGCTGTTGATGCACATGGAGAATGGGCTCAAGTCTGCTGACCCTAGAGACTGCACTGGCTACACTGGCTGGGCAGGCATCGCCCTGCTTTACCTGCACCTCCACGGTGTGTTCGGCGAGCCTTCATTCCTGCAGAAGGCTCTGGACTACGTGGGCCACAGCCTGACGTGTCCGACGCGGCGACGTGATGTCACCTTCCTGTGCGGTGACGCCGGGCCCCTGGCCGTGGCTGCAGTGGTCTACCATAGAGTACAGAGGGCACAGGAGTCAGACGAATGCCTCAGCAGGCTGCTGCAGCTCCATCAGTCGGTGGTAATGGGCTCTGGGGCCAGCGGTCTCCCTGATGAGCTGCTCTATGGCAGGATGGGTTACCTCTACGCCCTGACCTTCATCAACCAGCAGTTTGGCCACGACAAGATCCCCATCCAGTACATCCAACAGATCTGTGAGGCTGTGTTAATATCGGGGGAGGGCCAGTCTCAGAGGTTCCGTTGTCAGGACCAGAGCCCTCTGATGTACGAGTGGTACCAAGAACAGTATGTAGGCCCCGCCCACGGCCTGGCAGGCATCTACTACTTCCTCATGCAGCCAGGCTATGTGGCGGGGGATGAGAGGGTCCACAGGCTGGTGAGGCCCAGCGTGGACCACGTCTGTCGACTCCGCTTTCCCACTGGGAACTACCCGCCCTGCATAGGGGACAACAGGGACCTGCTGGTGCACTGGTGTCATGGAGCCCCAGGCATTATCTACATGCTGCTGCAGGCCTACAAGGTGTTTGGAGTGGGCCAGTACCTGGAAGAGGCTCTACAGTGTGGGGAGGTGGTGTGGCACAGGGGCCTGCTGAAGAAGGGCTACGGCCTGTGTCACGGCGCCGCGGGTAACGCCTACGCCTTCCTGGCCCTCTACAAGCTCACCCATGACCCCAAGCACCTCTACAGGGCCTGTATGTTTGCAGACTGGTGCATGAACTACGGCAAACATGGCTGCAGGACACCGGACACTCCGTTCTCATTATTTGAAGGCATGGCTGGAACCATCTACTTCCTGGCAGACCTCCTCCAGCCCCTGAAATCAAAGTTCCCAGCATTTGAGGTGTAAAAGGTATCCCTGCTTACCCCTGGTCTCCTGCCTGCTGCTCTGGAAACTATCATACACATCCAAGCACctaatctctctccatctctctcacacacacaccgagacattTTAAAGAAACACACACTGGCATATACACCGTAGAGTCACCTCTGCAGGTGATAATCAAGATGACTTTTTCCATCACAACAAAATCTTCCCACAGTCTCTCCTTATTGGCTGAACGAACAGTAATTGTGTGTTGTAGGGAGGGGGACCAGGGACAATCAGTGCAAGGGTGACATTTTGCACGAGCAAATGGCATTGAGCAGTGAGCAAAATAACCATAAGATATCAAATAGATGTGAAGGCAAATTATCCCATGTGAATTCCAAAAACTTCAACTCTCAATTGCATCGCACACATCGCATGCATTGCTCAGTTGACTAAACCCTGGCTAAATTCTTGCCTTCTTATAACACTACTTGTTGAAAAGTTCAAATTAAATCATGCTTTATAATGAGTTTTTTTATCATACAGATTGAGTTTTATGGTATTCTTTGCACAGAGCTGCACCTTTTTTTTTTGCGTGAGGAAAATGTCGCCCCTAGTCTAATATGTGCATGGTGCATGGGGGTTTGAAGTGTTATGCACTGAAACTGGCTCACTATTTTGTGTCTAGACATGGGGCATAAGCAGAGAGAACCACCTCGAGTGGATTGTTCATTTATGGACATCAATTCAATATTTACTTTTCATTCATTTTATGACGCAATGAGACTTCAGTTTGTCTAAGATGAAATTGACTAGGATTTGTTTGCTTGGGCTGGAGTCTGGTCAATGGGTCCACTCAACTCGGGACCATAATTACCCCCTAGGTGACGGGGGTTGGAgccctgtctccacctctcctgtCGGTCCCTTTTATCTGGCTCTGCTGTCCAGCTGTACTGTCTATGAATCAATAAAAATACCAAGGGGATTTGAGTACCGACCAATCTcctattaaaaaaaaatagtaaTAATCTTTGCTCCAACATTCATGTTTGTTAATTGTTAATTTTAGATTTCACCTTTTTTTTTTGAATAACCGGAATATAAATTCCATGGTGTAGAGGATTTTTCATCTTTGCAGATTGTGGCTGCAATAGAAACTTTGTAGTAAAATGATTATACTGTGTGACAAAGTactacagtaaaactgtaatgACCATGTGGCGCAtcataagttgtgtgtgtgtgatgtacgCTTGTAACTCTACTGCTCATCTACGGTTTCTTCACGTTTCCATTGGCTAAATAATAAAACAAGGTATTTTttacatctcacctgtctgttaCCTTTGGTATTAAACTATTATTCATGGT
>XM_036951780.1
GTATGTCCTTTTAATCGACTGACTTTTAACATTCGGCcttttttgtgtgtatttagCGCAAAGATTCCTTCTCGTTTGACCAAAAAACTTGAGTTTTAGTGGGAGCGGAGGGGAGTTGGAAGAAAATGGACCAGAGAGCTTGGAAGAACCCATACGCAGACTATGATGGGAACCCTGCATCTGTGCAAGAACTATTTGATTCACAAGGAAAGCTCACAGCAGAGTTTGCAGGGCGGTTGAGCAATGCCATCAGTCAGCTGTTGATGCACATGGAGAATGGGCTCAAGTCTGCTGACCCTAGAGACTGCACTGGCTACACTGGCTGGGCAGGCATCGCCCTGCTTTACCTGCACCTCCACGGTGTGTTCGGCGAGCCTTCATTCCTGCAGAAGGCTCTGGACTACGTGGGCCACAGCCTGACGTGTCCGACGCGGCGACGTGATGTCACCTTCCTGTGCGGTGACGCCGGGCCCCTGGCCGTGGCTGCAGTGGTCTACCATAGAGTACAGAGGGCACAGGAGTCAGACGAATGCCTCAGCAGGCTGCTGCAGCTCCATCAGTCGGTGGTAATGGGCTCTGGGGCCAGCGGTCTCCCTGATGAGCTGCTCTATGGCAGGATGGGTTACCTCTACGCCCTGACCTTCATCAACCAGCAGTTTGGCCACGACAAGATCCCCATCCAGTACATCCAACAGATCTGTGAGGCTGTGTTAATATCGGGGGAGGGCCAGTCTCAGAGGTTCCGTTGTCAGGACCAGAGCCCTCTGATGTACGAGTGGTACCAAGAACAGTATGTAGGCCCCGCCCACGGCCTGGCAGGCATCTACTACTTCCTCATGCAGCCAGGCTATGTGGCGGGGGATGAGAGGGTCCACAGGCTGGTGAGGCCCAGCGTGGACCACGTCTGTCGACTCCGCTTTCCCACTGGGAACTACCCGCCCTGCATAGGGGACAACAGGGACCTGCTGGTGCACTGGTGTCATGGAGCCCCAGGCATTATCTACATGCTGCTGCAGGCCTACAAGGTGTTTGGAGTGGGCCAGTACCTGGAAGAGGCTCTACAGTGTGGGGAGGTGGTGTGGCACAGGGGCCTGCTGAAGAAGGGCTACGGCCTGTGTCACGGCGCCGCGGGTAACGCCTACGCCTTCCTGGCCCTCTACAAGCTCACCCATGACCCCAAGCACCTCTACAGGGCCTGTATGTTTGCAGACTGGTGCATGAACTACGGCAAACATGGCTGCAGGACACCGGACACTCCGTTCTCATTATTTGAAGGCATGGCTGGAACCATCTACTTCCTGGCAGACCTCCTCCAGCCCCTGAAATCAAAGTTCCCAGCATTTGAGGTGTAAAAGGTATCCCTGCTTACCCCTGGTCTCCTGCCTGCTGCTCTGGAAACTATCATACACATCCAAGCACctaatctctctccatctctctcacacacacaccgagacattTTAAAGAAACACACACTGGCATATACACCGTAGAGTCACCTCTGCAGGTGATAATCAAGATGACTTTTTCCATCACAACAAAATCTTCCCACAGTCTCTCCTTATTGGCTGAACGAACAGTAATTGTGTGTTGTAGGGAGGGGGACCAGGGACAATCAGTGCAAGGGTGACATTTTGCACGAGCAAATGGCATTGAGCAGTGAGCAAAATAACCATAAGATATCAAATAGATGTGAAGGCAAATTATCCCATGTGAATTCCAAAAACTTCAACTCTCAATTGCATCGCACACATCGCATGCATTGCTCAGTTGACTAAACCCTGGCTAAATTCTTGCCTTCTTATAACACTACTTGTTGAAAAGTTCAAATTAAATCATGCTTTATAATGAGTTTTTTTATCATACAGATTGAGTTTTATGGTATTCTTTGCACAGAGCTGCACCTTTTTTTTTTGCGTGAGGAAAATGTCGCCCCTAGTCTAATATGTGCATGGTGCATGGGGGTTTGAAGTGTTATGCACTGAAACTGGCTCACTATTTTGTGTCTAGACATGGGGCATAAGCAGAGAGAACCACCTCGAGTGGATTGTTCATTTATGGACATCAATTCAATATTTACTTTTCATTCATTTTATGACGCAATGAGACTTCAGTTTGTCTAAGATGAAATTGACTAGGATTTGTTTGCTTGGGCTGGAGTCTGGTCAATGGGTCCACTCAACTCGGGACCATAATTACCCCCTAGGTGACGGGGGTTGGAgccctgtctccacctctcctgtCGGTCCCTTTTATCTGGCTCTGCTGTCCAGCTGTACTGTCTATGAATCAATAAAAATACCAAGGGGATTTGAGTACCGACCAATCTcctattaaaaaaaaatagtaaTAATCTTTGCTCCAACATTCATGTTTGTTAATTGTTAATTTTAGATTTCACCTTTTTTTTTTGAATAACCGGAATATAAATTCCATGGTGTAGAGGATTTTTCATCTTTGCAGATTGTGGCTGCAATAGAAACTTTGTAGTAAAATGATTATACTGTGTGACAAAGTactacagtaaaactgtaatgACCATGTGGCGCAtcataagttgtgtgtgtgtgatgtacgCTTGTAACTCTACTGCTCATCTACGGTTTCTTCACGTTTCCATTGGCTAAATAATAAAACAAGGTATTTTttacatctcacctgtctgttaCCTTTGGTATTAAACTATTATTCATGGT

Function

NR:

description
PREDICTED: lanC-like protein 1

GO: NA

KEGG:

id description
K25210 LANCL1; glutathione transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951779.1 False 2767 mRNA 0.48 10 10944403 10956829
XM_036951780.1 True 2696 mRNA 0.48 10 10944537 10956829

Neighbor

gene id symbol gene type direction distance location
LOC118941090 LOC106575811 coding upstream 82284 10856369 ~ 10862119 (+)
LOC110510737 LOC106575810 coding upstream 88073 10389628 ~ 10856330 (+)
LOC118941089 LOC106574813 coding upstream 575825 10362570 ~ 10368578 (+)
LOC118941088 LOC106575836 coding upstream 795274 10146949 ~ 10149129 (+)
LOC110495585 LOC106574888 coding upstream 810275 10131530 ~ 10134128 (+)
LOC118936256 LOC100194643 coding downstream 3915 10960744 ~ 10967479 (+)
LOC118941091 NA coding downstream 4956 10961785 ~ 10965666 (+)
LOC110527282 acadl coding downstream 16999 10973828 ~ 10979399 (+)
LOC118941092 LOC106575823 coding downstream 21853 10978682 ~ 11092554 (+)
LOC110514120 NA coding downstream 136757 11093586 ~ 11189284 (+)
G1516596 NA non-coding upstream 19323 10923624 ~ 10925080 (+)
G1516597 NA non-coding upstream 19450 10924079 ~ 10924953 (+)
G1516589 NA non-coding upstream 35905 10908275 ~ 10908498 (+)
G1516574 NA non-coding upstream 57947 10886242 ~ 10886456 (+)
G1516573 NA non-coding upstream 66612 10877565 ~ 10877791 (+)
G1516622 NA non-coding downstream 34236 10991065 ~ 10991966 (+)
G1516634 NA non-coding downstream 55329 11012158 ~ 11012391 (+)
G1516638 NA non-coding downstream 60360 11017189 ~ 11017403 (+)
G1516639 NA non-coding downstream 60736 11017565 ~ 11018491 (+)
G1516136 NA other upstream 617265 10310107 ~ 10327138 (+)
G1515853 NA other upstream 772447 10170102 ~ 10171956 (+)
G1515776 NA other upstream 969097 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 1941277 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 2264193 8677497 ~ 8682383 (+)
G1516637 NA other downstream 59936 11016765 ~ 11017089 (+)
G1517015 NA other downstream 676238 11633067 ~ 11634979 (+)
G1517019 NA other downstream 685960 11642789 ~ 11643758 (+)
G1517150 NA other downstream 983233 11940062 ~ 11941897 (+)

Expression


Co-expression Network