LOC118936256 (LOC100194643)


Basic Information

Item Value
gene id LOC118936256
gene name LOC100194643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10960744 ~ 10967479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951781.1
AGGCTAGAATGTCAACCAATAAAATCATTTGCGACCCTTGTAAAGGGGTTTGGAAATGCTGACCCGAGACAAGGCGTCTCGAATCAGTTCCTTAGCCGACTAAATATAGCCCTGTCCCCGTCCTTCTAAAGGCCTGCCAGCGCTCCAAGAGGGGACCACAGCTCCACTTTCCGTATTGCCCTAAGAAAGTTAGAGAACTTCCAAAGTGGCATCTGACCCGCCCCGTGACATCACCACCCGATCATAAATAAGAGAGGGACATTGAGCATGGTTCAGGACCACTCTCTCTCGGGACTCCTGCTTCTTTAGTATTTCTTTCTGCCCCGTGTCAACTCCTTCATCTCCGTAATGGCTGATGCTGCTCCCGCTGAGGCATCCGGTTCCGCTTTTTCGGCTGACCAGATCGAGGACTTCAAAGAGGCCTTTGGGCTCTTCGACAGAGTCGGTGACAGCATGATTGGATACAACCAGGTGGCTGATGTCATGCGCGCCCTGGGACAGAACCCCCAGAACAAGGAGGTTGCAGCGATCCTGGGAAAACCATCCCCCGATGATATGGCCAACAAGAGGCTGGCCTTCGCCGATTTCATGCCCATGATGGAAAAAGTCGATAAAATAGTGAAGGGTACACTTGATGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACCGTGTCTGGGGCTGAGCTGCGCATCGTGCTGGGCACACTGGGTGAGAAGATGTCAGAGGCCGAGATTGATTCCCTCCTTATAGGTCAGGAGGACGAGAACGGCAGCATCAACTATGAGGCATTCGTCAAGCACGTCCTGTCTGTGTAAGATAGTGCTGCAGCAACCAAAGCTTATCCATCTCCCAGACCCCATGGTGTCAGGACTGTTTTTCTAAAGACCAACCTAGGAAAGAAAAGGACTATAATGGGATGTCGAAAAGCCAttctgtgtttgttctgtttTCGTCCGTCCCCTTTTCAACTCATCACTACTCCTCTCTACGGAAGTGACCTCTCCGCTGTCAGATGACGAGCCTCGCCTCCACCTGGGGCATGTTTCTCCTCTTGGGGTGGGACGGTGACCACTCATCAAGTAGGGGATTGTACCCTCTGCCCCGCCCACCTCATGTCATCATCTTGCCGGCAATGCTGGCTGGAAAAGATTGTGGATCGGCCGCCAAGCCCCTCCCCCATCAGTTAtatttattttcactctgtcgtttcagaataaacttttccaaaagtACATCCCCCA
>XM_036951782.1
GTCAACTCCTTCATCTCCGTAATGACTTCAAAGAGGCCTTTGGGCTCTTCGACAGAGTCGGTGACAGCATGATTGGATACAACCAGGTGGCTGATGTCATGCGCGCCCTGGGACAGAACCCCCAGAACAAGGAGGTTGCAGCGATCCTGGGAAAACCATCCCCCGATGATATGGCCAACAAGAGGCTGGCCTTCGCCGATTTCATGCCCATGATGGAAAAAGTCGATAAAATAGTGAAGGGTACACTTGATGACTACGTTGAGGGTCTCCGCGTCTTCGACAAGGAGGGCAACGGCACCGTGTCTGGGGCTGAGCTGCGCATCGTGCTGGGCACACTGGGTGAGAAGATGTCAGAGGCCGAGATTGATTCCCTCCTTATAGGTCAGGAGGACGAGAACGGCAGCATCAACTATGAGGCATTCGTCAAGCACGTCCTGTCTGTGTAAGATAGTGCTGCAGCAACCAAAGCTTATCCATCTCCCAGACCCCATGGTGTCAGGACTGTTTTTCTAAAGACCAACCTAGGAAAGAAAAGGACTATAATGGGATGTCGAAAAGCCAttctgtgtttgttctgtttTCGTCCGTCCCCTTTTCAACTCATCACTACTCCTCTCTACGGAAGTGACCTCTCCGCTGTCAGATGACGAGCCTCGCCTCCACCTGGGGCATGTTTCTCCTCTTGGGGTGGGACGGTGACCACTCATCAAGTAGGGGATTGTACCCTCTGCCCCGCCCACCTCATGTCATCATCTTGCCGGCAATGCTGGCTGGAAAAGATTGTGGATCGGCCGCCAAGCCCCTCCCCCATCAGTTAtatttattttcactctgtcgtttcagaataaacttttccaaaagtA

Function

NR:

description
myosin light chain 3, skeletal muscle isoform-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951781.1 False 1257 mRNA 0.52 6 10960744 10967479
XM_036951782.1 True 863 mRNA 0.52 5 10961071 10967470

Neighbor

gene id symbol gene type direction distance location
LOC110527277 LOC106575822 coding upstream 3915 10944403 ~ 10956829 (+)
LOC118941090 LOC106575811 coding upstream 98625 10856369 ~ 10862119 (+)
LOC110510737 LOC106575810 coding upstream 104414 10389628 ~ 10856330 (+)
LOC118941089 LOC106574813 coding upstream 592166 10362570 ~ 10368578 (+)
LOC118941088 LOC106575836 coding upstream 811615 10146949 ~ 10149129 (+)
LOC110527282 acadl coding downstream 6349 10973828 ~ 10979399 (+)
LOC118941092 LOC106575823 coding downstream 11203 10978682 ~ 11092554 (+)
LOC110514120 NA coding downstream 126107 11093586 ~ 11189284 (+)
LOC110527285 LOC106574778 coding downstream 246034 11213513 ~ 11214997 (+)
LOC110495609 LOC106590510 coding downstream 395132 11362611 ~ 11420903 (+)
G1516596 NA non-coding upstream 35664 10923624 ~ 10925080 (+)
G1516597 NA non-coding upstream 35791 10924079 ~ 10924953 (+)
G1516589 NA non-coding upstream 52246 10908275 ~ 10908498 (+)
G1516574 NA non-coding upstream 74288 10886242 ~ 10886456 (+)
G1516573 NA non-coding upstream 82953 10877565 ~ 10877791 (+)
G1516622 NA non-coding downstream 23586 10991065 ~ 10991966 (+)
G1516634 NA non-coding downstream 44679 11012158 ~ 11012391 (+)
G1516638 NA non-coding downstream 49710 11017189 ~ 11017403 (+)
G1516639 NA non-coding downstream 50086 11017565 ~ 11018491 (+)
G1516640 NA non-coding downstream 52390 11019869 ~ 11020286 (+)
G1516136 NA other upstream 633606 10310107 ~ 10327138 (+)
G1515853 NA other upstream 788788 10170102 ~ 10171956 (+)
G1515776 NA other upstream 985438 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 1957618 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 2280534 8677497 ~ 8682383 (+)
G1516637 NA other downstream 49286 11016765 ~ 11017089 (+)
G1517015 NA other downstream 665588 11633067 ~ 11634979 (+)
G1517019 NA other downstream 675310 11642789 ~ 11643758 (+)
G1517150 NA other downstream 972583 11940062 ~ 11941897 (+)

Expression


Co-expression Network