LOC118941091


Basic Information

Item Value
gene id LOC118941091
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10961785 ~ 10965666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037369.1
GAAGTGTGTTGAGTTTCTTAGGGCCCTCTCTTTGTCCTGTCTATCTACTCTCTAGGTGAGGACTGTGTAAGACTAGGTGAGGACTGTGTGTAGGACTAGGTGAAGACTCTGTGTAGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGACTCTGTGTAAGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTATGTGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGACTATATGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTATGTGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGTGGACTAGGTGAGGACTTTGTGTAGGACTAGGTGAGGTGAGGACTATGTGTAGGACTAGGTGAGGTGAGGACTATGTGTAGGACTAGGTGAGGTGAGGACTATGTGTAGGACTAGGTGAGGTGAGGACTCTGTAGGACTAGGTGAGGTGTGGACTAGGTGAGGACTTTGTGTAGGACTAGGTGAGGTGAGGACTATGTGTAGGACTAGGTGAGGTGAGGACTATGTGTAGGACTAGGTGAGGTGAGGACTATGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGTGGACTAGGTGAGGACTTTGTGTAGGACTAGGTGAGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGTAGGACTAGTTGAGGTGAGGACTATGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTATGTGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGGACTAGGTGTGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTATGTGGACTAGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGTACTAGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGGACTAGGTGAGGTGAGGACTGTGTAGGACTAGGTGAGGACTATGTGGATTAGGTGAGGTGAGGACTCTGTGGACTAGGTGAGGACTCTGTGGACTAGGTGAGGTGAGGACTATGTGGACTAGGTGAGGACTTTGTCTTTACAGATAGCTCAGTGAAAAAGCCTGTCCCCTGTGTTTTACAAAGTAGCACTCACCAAGTTCAATAGGCAAAATTACACTCAGTCAAGTTGCCCCCAGAATACGTTCCCCTGTGGACTAGCTTTAGTTATCCTCTCAACGTAGAATTGTATGATCTGCATGGTTTCTGCACCATGAGGTCCCGTCTGTGAGGGCCTAACAAAGTGTGATAAGTCACTGGAAATTACCTAAGTTGTGTCCACTAGTTTTGGAGCCCATGGCCTTGACAACACAAGTGCAGAATAACCCAGGGGCTTGTTCAGCTGTCCAGAGGAGATTAGTGTCCCTGCTTCTATTCTGAGCAGCACTGTCTTGTCTTGAATGACAGAGCACAGTGGTCCTTAGGGCTCGCGTGGCCAGCCGCATCTCCGTACAGCAGGAGCCTGACCCACCCTCCACCCTTTGTTCCTCACTGAAGGACATGATCTTTTAAAAGACTCCTTCAGAGTGGCTGTTGTTTTGTGTAGAGATAGTTGGTGTGTAGAACTAGTAGCAGTTGGTGTGTAGAGCTAGTAGCAGTTGGTGTGTAGAACTAGTAGCAGTTGGTGTGTAGAACTAGTGGCAGTTGGTGTGTAGAACTAGTGGCAGTTGGTGTGTAGAACTAGTGGCAGTTGGTGTGTAGAACTAGTGGCAGTTGGTGTGTAGAACTAGTggcagttggtgtgtgtgtggaactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagaactaGTGGCAGTTGGTGTGTAGAACTAGTggtagttggtgtgtgtgtgtagaactaACTAGTGGTAGGTAACTGGTCAGAAAAGGGTGAGCTGGAAATGAACTGTTGAGGCCAATTATTCATTTTAGCACCTAGTGAAGTATCACGTCAGTCAGTGGCAGGCGGGCCCCATTGGCTGGAGGAGAAGCTAGGCTGGGTGCTGCAGGTGGGCCCCACTCTCCTATACTGGACACATCATTAACACACTGTTCTTAAGACCATATACAATTCCTGTATGTCATCTTATACAATACAATTATTGTATAGGTGTTATCAGACAAGTCACTATTAGAACAAATTGGTAACACTTGATCAACTTTCATAAATAAGCATtaataaacaaatgttttttcATTATAAACATTTATAAACATTTATAATGTAATACAAGTTATTATAAACTGTTTCCTAAAGAATCCACTGCTTCTGCATACTCTAGACTAGATAAATTGCTATTGGCTGGAGGAGCAGCTAGGCTGGGTGCTGGAGGAGCAGCAGCTAGGCTGGGTGCTGGAGGAGCAGCTAGGCTGGGTGCTGGAGGAGCAGCTAGGCTGGGTGCTGGAGGAGCAGCTAGGCTGGGTGCTGGAGGAGCAGCTAGGCTGGGTGCTGGAGGAGCAGCTAGGCTGGGTGCTGGAGGAATGCAGGCGGGCCCTATGCTAGCGTGTGTTGATTACTCCAGAGTCAGCATTCTTATGTTTAAACCGAGCCGGGCAGGCGGACACGCCCGTGCCCGTATATGGCATGGGTTACTTTCTTAGGGCGTATCGATTGTCAGTCGCTGGTCCTAAATGCCAAACGCCAGCAGGCCTTgtaggggggagtgagggaggggggcaGCTGCTGCAGTTCAGAAATCACATAAGGCCAGTAATCTGTTGGATCACTTTCAATTGAGATTCACAGTGGAGTCCATAGAAATAGGGACCCGCCTGCCATGCTACCTCACCTCTACAGTTGATCATTATTCAGGGAACAATGAGGGAGGAATCGAGCGGTCGCCATCTTGGAATCTGCAGCACGGCAACATGAGACATGTCGTTTCTCACCATTCTCCAGTGCTGCATTTAGAATGAACTTTCACGAGAACAGTGTCATTGATTGCGTGTAGTTTTACTAGAAGTATTGAACAAATACCTGGTCTGTTTTGTCATTGGTTCACAAAACAAAATGACTAATAACGACGAAGCTCCTTTTCGTCCCTTTCAATAACTAAAATATTACAACTTTGATTTATTGAAACATTTTGAGTGTGAAGAGTTGTCAGGTTACTTACTGTATGTTTGTGTACTTTCCGCTTGTCTTCATCCAACTCATCGTAACTCTTCTGCTCTTCCCTCCGCC
>TU1735971
TGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTAGGTGAGGACTCTGTGTAGGACTAGGTGAGGTGAGGACTCTGTGTAGGACTATGTGGACTAGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGTACTAGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGGACTAGGTGAGGACTATGTGGACTAGGTGAGGTGAGGACTATGTGGACTAGGTGAGGACTTTGTCTTTACAGATAGCTCAGTGAAAAAGCCTGTCCCCTGTGTTTTACAAAGTAGCACTCACCAAGTTCAATAGGCAAAATTACACTCAGTCAAGTTGCCCCCAGAATACGTTCCCCTGTGGACTAGCTTTAGTTATCCTCTCAACGTAGAATTGTATGATCTGCATGGTTTCTGCACCATGAGGTCCCGTCTGTGAGGGCCTAACAAAGTGTGATAAGTCACTGGAAATTACCTAAGTTGTGTCCACTAGTTTTGGAGCCCATGGCCTTGACAACACAAGTGCAGAATAACCCAGGGGCTTGTTCAGCTGTCCAGAGGAGATTAGTGTCCCTGCTTCTATTCTGAGCAGCACTGTCTTGTCTTGAATGACAGAGCACAGTGGTCCTTAGGGCTCGCGTGGCCAGCCGCATCTCCGTACAGCAGGAGCCTGACCCACCCTCCACCCTTTGTTCCTCACTGAAGGACATGATCTTTTAAAAGACTCCTTCAGAGTGGCTGTTGTTTTGTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037369.1 False 3715 mRNA 0.49 3 10961785 10965666
TU1735971 True 830 lncRNA 0.49 2 10963120 10964040

Neighbor

gene id symbol gene type direction distance location
LOC110527277 LOC106575822 coding upstream 4956 10944403 ~ 10956829 (+)
LOC118941090 LOC106575811 coding upstream 99666 10856369 ~ 10862119 (+)
LOC110510737 LOC106575810 coding upstream 105455 10389628 ~ 10856330 (+)
LOC118941089 LOC106574813 coding upstream 593207 10362570 ~ 10368578 (+)
LOC118941088 LOC106575836 coding upstream 812656 10146949 ~ 10149129 (+)
LOC110527282 acadl coding downstream 8162 10973828 ~ 10979399 (+)
LOC118941092 LOC106575823 coding downstream 13016 10978682 ~ 11092554 (+)
LOC110514120 NA coding downstream 127920 11093586 ~ 11189284 (+)
LOC110527285 LOC106574778 coding downstream 247847 11213513 ~ 11214997 (+)
LOC110495609 LOC106590510 coding downstream 396945 11362611 ~ 11420903 (+)
G1516596 NA non-coding upstream 36705 10923624 ~ 10925080 (+)
G1516597 NA non-coding upstream 36832 10924079 ~ 10924953 (+)
G1516589 NA non-coding upstream 53287 10908275 ~ 10908498 (+)
G1516574 NA non-coding upstream 75329 10886242 ~ 10886456 (+)
G1516573 NA non-coding upstream 83994 10877565 ~ 10877791 (+)
G1516622 NA non-coding downstream 25399 10991065 ~ 10991966 (+)
G1516634 NA non-coding downstream 46492 11012158 ~ 11012391 (+)
G1516638 NA non-coding downstream 51523 11017189 ~ 11017403 (+)
G1516639 NA non-coding downstream 51899 11017565 ~ 11018491 (+)
G1516640 NA non-coding downstream 54203 11019869 ~ 11020286 (+)
G1516136 NA other upstream 634647 10310107 ~ 10327138 (+)
G1515853 NA other upstream 789829 10170102 ~ 10171956 (+)
G1515776 NA other upstream 986479 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 1958659 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 2281575 8677497 ~ 8682383 (+)
G1516637 NA other downstream 51099 11016765 ~ 11017089 (+)
G1517015 NA other downstream 667401 11633067 ~ 11634979 (+)
G1517019 NA other downstream 677123 11642789 ~ 11643758 (+)
G1517150 NA other downstream 974396 11940062 ~ 11941897 (+)

Expression


Co-expression Network