LOC110527285 (LOC106574778)


Basic Information

Item Value
gene id LOC110527285
gene name LOC106574778
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11213513 ~ 11214997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037371.1
tttccaccagacactgggagatgaattcaccttacagcaggacaataacctaaaacacaaggacaaatctacattggagttgcttactaagaagCCAGTGATTGTTCCTGAGTGgcaattttgacttaaatctatggaaagacctgAATATTTGTCAAGCAATAATCAACAACTAATTTAACAGAAGTTTGAAAAGAATAATAGGttaatgttgcacaatccaggtgtggaatcttagacttacccagaaagactcagctgtaatTGATGCCAAAGGTGACTCTATGTGTTGACTTgtgggggttgaatacttatctaatcaacaGATGCATGTGATTTGTCAGGTGAATGGTGTCGCctgttgacaaaaaatgacacATCTTTTTGAATCCGTTCTGCGTAAAGTTAAGGGGTGCGACTACTTTCTGAGGGCACTCTAGAGCCATCACTTGTGTTCATGGTTGTCACACTCACTGCTTGGTTCAGGGACCTCATATCATCTGCTACAGGGCTCTTTGCAGCGAGAATGTGCACCACTGCAACGTGACCACCTTTTGGTGTAAAGTGTGCTTGATTTGACCCTCTGTAGGAATGGAACGCAGATTGACTTCCTGGCTGTGGATGAGAACTTTGTGATGCAGGGGTTCATCAACCTGGAGACCATTAAGACCATCAAACCAGGTGATGAGATTGTGGTGGAGTGCACCTATAACACAGCCACTCGCAAAGGAATCACGCAGTTGGGGCTGGCCACCACTGATGAGATGTCTCTGGCCTTTATCATCTACTACCCAGccagtaaatgagaacttgttctcaactagtctaccagAGGTATTGTGGAGATGTTGAAGACTAAAGCTTGGGACCAGGCGTCCATTGCTGAGCATGAGGCCACAATGAAGAAGGTCCCTCAGATTGGTTTAATCAGCAACGAACATAGTAACTACACCATATATGAGGGAAGCATCCTCAACATGATGGCTAGCCCTTCCGTGAGTTGCAGGAGTGATCCAACAGGCCTGGGTCTGTGAAGAGTTAATTGGCAACAATAGCTTCTGGTTCAGAAGGCTGAATGTTTTCAAAATGTGTCTCCCATGCAATAGTAGAAAGTGTCAACTGTTTATTCAtgatgtataaaaaataaatccaTTCAGACACCTTCCTATGATTTATGTTAAATGTCTTACCATGTGCAATAATATTTT
>TU1735963
aaacacaaggacaaatctacattggagttgcttactaagaagCCAGTGATTGTTCCTGAGTGgcaattttgacttaaatctatggaaagacctgAATATTTGTCAAGCAATAATCAACAACTAATTTAACAGAAGTTTGAAAAGAATAATAGGttaatgttgcacaatccaggtgtggaatcttagacttacccagaaagactcagctgtaatTGATGCCAAAGGTGACTCTATGTGTTGACTTgtgggggttgaatacttatctaatcaacaGATGCATGTGATTTGTCAGGTGAATGGTGTCGCctgttgacaaaaaatgacacATCTTTTTGAATCCGTTCTGCGTAAAGTTAAGGGGTGCGACTACTTTCTGAGGGCACTCTAGAGCCATCACTTGTGTTCATGGTTGTCACACTCACTGCTTGGTTCAGGGACCTCATATCATCTGCTACAGGGCTCTTTGCAGCGAGAATGTGCACCACTGCAACGTGACCACCTTTTGGTGTAAAGTGTGCTTGATTTGACCCTCTGTAGGAATGGAACGCAGATTGACTTCCTGGCTGTGGATGAGAACTTTGTGATGCAGGGGTTCATCAACCTGGAGACCATTAAGACCATCAAACCAGGTGATGAGATTGTGGTGGAGTGCACCTATAACACAGCCACTCGCAAAGGAATCACGCAGTTGGGGCTGGCCACCACTGATGAGATGTCTCTGGCCTTTATCATCTACTACCCAGccagtaaatgagaacttgttctcaactagtctaccagAGGTATTGTGGAGATGTTGAAGACTAAAGCTTGGGACCAGGCGTCCATTGCTGAGCATGAGGCCACAATGAAGAAGGTCCCTCAGATTGGTTTAATCAGCAACGAACATAGTAACTACACCATATATGAGGGAAGCATCCTCAACATGATGGCTAGCCCTTCCGTGAGTTGCAGGAGTGATCCAACAGGCCTGGGTCTGTGAAGAGTTAATTGGCAACAATAGCTTCTGGTTCAGAAGGCTGAATGTTTTCAAAATGTGTCTCCCATGCAATAGTAGAAAGTGTCAACTGTTTATTCAtgatgtataaaaaataaatccaTTCAGACACCTTCCTATGATTTATGTTAAATGTCTTAC

Function

NR:

description
PREDICTED: DBH-like monooxygenase protein 2 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037371.1 False 1208 mRNA 0.43 4 11213513 11214997
TU1735963 True 1138 lncRNA 0.43 4 11213565 11214979

Neighbor

gene id symbol gene type direction distance location
LOC110514120 NA coding upstream 24229 11093586 ~ 11189284 (+)
LOC118941092 LOC106575823 coding upstream 122884 10978682 ~ 11092554 (+)
LOC110527282 acadl coding upstream 234114 10973828 ~ 10979399 (+)
LOC118936256 LOC100194643 coding upstream 246034 10960744 ~ 10967479 (+)
LOC118941091 NA coding upstream 247847 10961785 ~ 10965666 (+)
LOC110495609 LOC106590510 coding downstream 147614 11362611 ~ 11420903 (+)
LOC110528750 LOC106575767 coding downstream 238017 11453014 ~ 11456879 (+)
LOC110495615 LOC106574963 coding downstream 534732 11749729 ~ 11759288 (+)
LOC110495622 LOC106575786 coding downstream 551366 11766363 ~ 11772739 (+)
LOC110495619 slc19a2 coding downstream 558117 11773114 ~ 11779870 (+)
G1516683 NA non-coding upstream 18744 11192322 ~ 11194769 (+)
G1516660 NA non-coding upstream 133691 11079046 ~ 11079822 (+)
G1516640 NA non-coding upstream 193227 11019869 ~ 11020286 (+)
G1516639 NA non-coding upstream 195022 11017565 ~ 11018491 (+)
G1516638 NA non-coding upstream 196110 11017189 ~ 11017403 (+)
G1516694 NA non-coding downstream 1261 11216258 ~ 11216756 (+)
G1516693 NA non-coding downstream 6668 11221665 ~ 11222237 (+)
G1516699 NA non-coding downstream 14723 11229720 ~ 11231308 (+)
G1516702 NA non-coding downstream 24264 11239261 ~ 11239673 (+)
G1516862 NA non-coding downstream 93233 11308230 ~ 11309024 (+)
G1516637 NA other upstream 196424 11016765 ~ 11017089 (+)
G1516136 NA other upstream 886375 10310107 ~ 10327138 (+)
G1515853 NA other upstream 1041557 10170102 ~ 10171956 (+)
G1515776 NA other upstream 1238207 9974528 ~ 9975306 (+)
G1517015 NA other downstream 418070 11633067 ~ 11634979 (+)
G1517019 NA other downstream 427792 11642789 ~ 11643758 (+)
G1517150 NA other downstream 725065 11940062 ~ 11941897 (+)
G1517414 LOC106575752 other downstream 1618654 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1719657 12934654 ~ 12936278 (+)

Expression


Co-expression Network