LOC110528750 (LOC106575767)


Basic Information

Item Value
gene id LOC110528750
gene name LOC106575767
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11453014 ~ 11456879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951829.1
TAAACTCCATGCTTAACATCTGGATGTTGTAGAACGGAGTAGCATCACTCTACTCTCTAGAGTGAGTTAGACAGACGTGCGGAAACCGAGTATCATCGAATATAAGATTGTTGTTGTCAAATGGTCAGAACGTCAGCTACAACTCGAGGATATTGATTGGCACTTGGAATGGGCTTTGGCTCCCGCTATCGGAGCGCAAGGTAAACCAAAAGGGGCCACATGAGTTCTGCTATATTCGGAAACCACCACGGCTCCAAATTGACTGCTAATTCTGTTGATCTGGACACATCTCCACTCTCCAGTATCGTGTGTCGACCATCTGCAATGTTGATGGAATGGTTTTATTTAATCGCGAGAAACGAACAAATAATCACGGGATTACCAAAACGTCGACATTTCTAAGGTCGGTTGTCTGTCGAATAACAACGTTGTGAAGTTGGTGACTTCCGAACCCAAGGAAGACTGCAGGTGTCATCGCTCCCTTCCATTTCTCCAGTAACATTTCCTTGATTGACATTCCTTCCATCAGATCATATGAGTGCAGCGTTCAGCCCTTCGTTTATGATGATGCAGCGCCCACTGGGAAGCACCACTGCCTTCAGTATCGACTCTCTGATCGGCGGTCCCCCTCAGCCCAGCCCGGGACACTTCGTCTACACCGGTTACCCCATGTTCATGCCGTACCGGTCAGTGGTGCTCCCACCGCACCCTCCGCCGCCCCCTGCCCTACCCCAGTCCGCCCTGCAGCAGGGGCTCTCGGCTACCCATCCGCACCACCAGATCCCCAGCCTCCAGAACTCTTTCTGCTCTAGCCTGGCTCAGGGCATGGCGCTCACCTCCACCCTGATGGCCAGCCTGCCTGGAGGGTTCTCGGCTTCACAGCAGCACCAGGAGGCGGCGAGGAAGTTCGGCTCGCAGTCTCTCCACGCCGCCTTCAATAAATCTCAGGACATTCGTTTGGATGGGGATGACGGAAAGACATTTCTAGGAAAGGAGTCCGCAACGCTCCCCTCCTACCACGACTCAGAGCCATTGCAgtcatccacagCCAGAACCCACGGCAAAGAAGACCCGAAAGAGGACGAATGCAATAGAAGAGATGAGAGCTTCTCAATGGACAGCGATTTAGACTACAGCTCCGACGACAACATGACGGGTAACTCGATGTGTCAGAAAGATGATGGGGAGGGTAACGTGGATGAGGGCGTCCACGGGTCCAACGGCACTGGCAGCACCACGTCTACCGGTAAGAACCGGCGGCGGAGAACGGCGTTCACGAGCGAGCAGCTCTTGGAACTGGAGAAGGAGTTCCATTGTAAGAAATACCTGTCTTTAACGGAACGCTCTCAGATTGCGCATGCCTTGAAACTCAGCGAAGTTCAAGTCAAGATCTGGTTCCAGAACCGGAGGGCCAAGTGGAAGCGCGTAAAGGCTGGTAACGTCAATTCCAAAACCGGCGAGCCCTCTAGGAACCCTAAAATCGTGGTGCCTATCCCCGTGCACGTCAGCCGGTTTGCAATAAGGAGTCAGCACCAACAGTTAGAGCAAGCCAGACCATAACATTTCTTTATGTTAAACCGATGGACGAAATACAGATTAAGTTAATAACACTGTTTAAAAACAGAAAAACAGCACACACGTTATTTTGGAATTGGACTATTGATAATCACAAACCAAGTTTATCCTTTGGTGAGTCTTTGTAAATCTTTGTAAGACAGAGGAGAGCAAATGAATTGATGGTACATTGCTTTTCCTCTGCATTACTGCTGAATCGATCCACTGATGGTAAACTGATTAAATACCAAGACAAAAAAACTCGAAATGGTGACATGTATCACCTTGGTTACTAGTGTAAATACCGAGATGGGCCATAACTATAACCGCCATGGGACCAAATTGAGGACATTACAACAAGACAACAATACATCCAATTGTACATTTCCGAGATGTTGATTAAAAAGATAACCTACTTTTACGTCTGTTAGATTTTCTTTGAGGTTTGTGCTGCCGATTCTGAAGGACCTTGCTTGTATTATTGTTGTTTTTGCAGCAGGCGCAAATCAGATCAGAATGAACAGCTTTGTCCCAAAAGGAGCACTTTTATCATTTCTAATTTTATCCCCCCAAACCAGTACACATATTGTACACATAGCCTACAAATATGCTCAGACATCTCAACCATCAATCATCTCCTCCAAAAAGCAAAGAGTGGCCCTGTAAAACCATCCTACTTCTGTTCTCAGTTTGAGTTTGTTTCCATTGTTTCATTCCATGGTTGCTTGAATGATTTTTCTTCATTGTGACTTTTTCAACAGTCAAGGAGCACGCTGCTAATTTATTTAATATTGTGCAAAAAGTAACTAACATTACATTACTTATTGAGTAAATAATAAAGTGTGCATTAAAGATGAACCATTAGCAATTGT

Function

NR:

description
PREDICTED: homeobox protein GBX-2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09321 GBX; homeobox protein GBX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951829.1 True 2426 mRNA 0.47 2 11453014 11456879

Neighbor

gene id symbol gene type direction distance location
LOC110495609 LOC106590510 coding upstream 32111 11362611 ~ 11420903 (+)
LOC110527285 LOC106574778 coding upstream 238017 11213513 ~ 11214997 (+)
LOC110514120 NA coding upstream 263730 11093586 ~ 11189284 (+)
LOC118941092 LOC106575823 coding upstream 362385 10978682 ~ 11092554 (+)
LOC110527282 acadl coding upstream 473615 10973828 ~ 10979399 (+)
LOC110495615 LOC106574963 coding downstream 292850 11749729 ~ 11759288 (+)
LOC110495622 LOC106575786 coding downstream 309484 11766363 ~ 11772739 (+)
LOC110495619 slc19a2 coding downstream 316235 11773114 ~ 11779870 (+)
LOC118941042 LOC105005823 coding downstream 334722 11791601 ~ 11802738 (+)
LOC110495630 LOC106575789 coding downstream 346298 11803177 ~ 11808380 (+)
G1516911 NA non-coding upstream 63884 11353449 ~ 11389130 (+)
G1516899 NA non-coding upstream 111664 11340388 ~ 11341350 (+)
G1516891 NA non-coding upstream 113558 11336239 ~ 11339456 (+)
G1516875 NA non-coding upstream 132338 11320428 ~ 11320676 (+)
G1516862 NA non-coding upstream 143990 11308230 ~ 11309024 (+)
G1516960 NA non-coding downstream 56210 11513089 ~ 11513506 (+)
G1516961 NA non-coding downstream 56958 11513837 ~ 11515942 (+)
G1516975 NA non-coding downstream 91519 11548398 ~ 11548669 (+)
G1516998 NA non-coding downstream 137783 11594662 ~ 11595011 (+)
G1516999 NA non-coding downstream 140413 11597292 ~ 11597705 (+)
G1516637 NA other upstream 435925 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1125876 10310107 ~ 10327138 (+)
G1515853 NA other upstream 1281058 10170102 ~ 10171956 (+)
G1515776 NA other upstream 1477708 9974528 ~ 9975306 (+)
G1517015 NA other downstream 176188 11633067 ~ 11634979 (+)
G1517019 NA other downstream 185910 11642789 ~ 11643758 (+)
G1517150 NA other downstream 483183 11940062 ~ 11941897 (+)
G1517414 LOC106575752 other downstream 1376772 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1477775 12934654 ~ 12936278 (+)

Expression


Co-expression Network