LOC110495622 (LOC106575786)


Basic Information

Item Value
gene id LOC110495622
gene name LOC106575786
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11766363 ~ 11772739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570956.2
ATTCTCAAATGACAAGTCATGTGATCTGTTGCTGACAAAAAAACAACTGAAACCGACGGTCTTTCGGCATTTGAAGACTCACACATCTGTCGGGGATCGATCTGATAGCTAACATGCAGAACGCCATTAATTCCGTAAAAGGCACGGCCCTTGGTGTAGCCGAGTTTTTTACTCCAGTGCTGAAGGAATCCAAATTCAAGGAGACAGGAGTTATCACTCCAGAAGAGTTTGTAGCTGCTGGAGATCACCTTGTTCATCACTGCCCCACATGGAAATGGGTGtctggggaagaggagaaggTGAAGCCGTATTTACCCAAGGATAAGCAGTTCCTATTGACTCGCAATGTTCCCTGCTACAAGCGCTGTAAACAGATGGAGTATTGTGATGAACTGGAAGCCATCATAGAGGAGGATGACGGAGATGGAGGATGGGTCGACACCTACCACAACTCAGGTATAGGGGGAGTTACAGAAGCTGTACGAGAAATCTCATTGGACAACAAGGACATGAACATGAATGTGAAGTCTGGTGCTTGTGGGAacggagatgatgatgatgatgatgaagacgaGGCAGCAGATATGGAAGAGTATGAGGAGAGTGGACTACTGGAAACAGATGAGGCCACCCTGGACACCAGTAAAATGGTGGACTTGTCTAAATCCAAAACGGGAGAAGCTGGGAGCGATGACATCCTGCAGACTCGAACCTATGACCTCTACATCACATATGACAAATACTATCAGACTCCTCGACTCTGGCTGTTTGGATACGATGAGGACAGACAGCCCCTGACAGTGGATCAGATGTATGAAGACATCAGCCAGGATCATGTGAAGAAAACCGTCACCATCGAAAATCACCCCCACCTACCACCCCCAGCCATGTGCTCCGTGCATCCCTGCAGACATGCTGAAGTGATGAAAAGGATCATTGAGACGGTggcagaagggggaggagagcTTGGAGTTCATATGTATCTGTTGATTTTCTTGAAGTTTGTCCAGGCCGTCATCCCCACGATAGAATACGACTACACAAGGCACTTCACCATGTAGCTCCATCCTACAGAGGTGTAGGCTACTCTTGCAAACATCTTTGAGTGTAGGAGGAATCTGTCTTCTGGCTGGCAGCGTTAGTGGGGTATGGAATGTTATCTCTGGGAATGACTCTTGGAATATTCTGGGTACTCTCACCCTCTTGGCGTGGGAATAGGTTCAATCGCTGAGGGGTTGATGGGTGTGTACAGATGTTGGTAATGCTGTAATCccaatgatgtaatggctttatgTGGTGACCGATCTCGCAGTGTTTTTGTCTGGAAGATTCTCACTCTGTACTTGGCAAATGCTCTGCCATTAACAACCATTCAAAGATAACTATATTTATTTTACATTAATTCACTGACAGACAGGCTTTCAAGTTTTCTCCATTTTGTTTTCATAACCACACCTTCTTTTTTTTACCATAGTAATGGTGCCACTAATGTCCTCTCAAATGTTACCAGTTAAATGTCGTTGAAAGAAATctaacaaatgttttgtccacATTATAGCTTTTTCAGTGTGATGCACTGTGCTGGACTAATGTTTGGACCTCTTTACTGTTTCAGACCCATGCCAGTTTGTCTTAATGGTAAAGTGTACATGGTCTTTTGGGCCCAGGACCATTGTTGGTTCCTGTAAGTGGGGTCGGTGTTTTCTTTGCCCAGCTCTtcttttttttcacatttctttTTTTGACCCTGTTCCTAGTTCCACTGTCTTGTCCTGTAGAGATGACGTCATGATTGTGTCGTATGAATATGTGAGCGTTACCATTTTGTGTGATGACGCGCAATGCTACCTGTATCACCAGATTATTCAAAGACACCGTATATCAGGAGTTTGACTGCGTCTTCTCTAATATAGAAAGATGTCAGTTCTGCACAGTGCATTAATTGTTAACTATAGTACTCTTCTCTTAACAGTATGTATAACTCACTCATTAATGCTGAAATATTGACTGTAAAATGTCTGAGTAACTGACTCCAGAGTACTTGATCTTTTCCTGAGAATCAGCTGGACAGGTGTTGTGGCCCTTTATCTGTTGATCCTATAGACTCCTTATGTAACAGCTCAGTCTTAACACACTGAACATGTTAAAGTAATGTACATTTATAGCAATAAAAATCCCCAATATCATATGATGGATTGTATACATTATGCTGTTATAAACGACCTACCACATTATAAAGCA
>XM_036951844.1
TTCTCAAATGACAAGTCATGTGATCTGTTGCTGACAAAAAAACAACTGAAACCGACGGTCTTTCGGCATTTGAAGACTCACACATCTGTCGGGGATCGATCTGATAGCTAACATGCAGAACGCCATTAATTCCGTAAAAGGCACGGCCCTTGGTGTAGCCGAGTTTTTTACTCCAGTGCTGAAGGAATCCAAATTCAAGGAGACAGGAGTTATCACTCCAGAAGAGTTTGTAGCTGCTGGAGATCACCTTGTTCATCACTGCCCCACATGGAAATGTAGTCCCAGATGTCACATCATGTTTATTCCATCCAGGGTGtctggggaagaggagaaggTGAAGCCGTATTTACCCAAGGATAAGCAGTTCCTATTGACTCGCAATGTTCCCTGCTACAAGCGCTGTAAACAGATGGAGTATTGTGATGAACTGGAAGCCATCATAGAGGAGGATGACGGAGATGGAGGATGGGTCGACACCTACCACAACTCAGGTATAGGGGGAGTTACAGAAGCTGTACGAGAAATCTCATTGGACAACAAGGACATGAACATGAATGTGAAGTCTGGTGCTTGTGGGAacggagatgatgatgatgatgatgaagacgaGGCAGCAGATATGGAAGAGTATGAGGAGAGTGGACTACTGGAAACAGATGAGGCCACCCTGGACACCAGTAAAATGGTGGACTTGTCTAAATCCAAAACGGGAGAAGCTGGGAGCGATGACATCCTGCAGACTCGAACCTATGACCTCTACATCACATATGACAAATACTATCAGACTCCTCGACTCTGGCTGTTTGGATACGATGAGGACAGACAGCCCCTGACAGTGGATCAGATGTATGAAGACATCAGCCAGGATCATGTGAAGAAAACCGTCACCATCGAAAATCACCCCCACCTACCACCCCCAGCCATGTGCTCCGTGCATCCCTGCAGACATGCTGAAGTGATGAAAAGGATCATTGAGACGGTggcagaagggggaggagagcTTGGAGTTCATATGCATCCTTTAAGTGAATTGTCGGCTCAGCTGAAGTCAAGTGTTTTTAATGCAGCTTGGGGATTTAAGTGTATCTGTTGATTTTCTTGAAGTTTGTCCAGGCCGTCATCCCCACGATAGAATACGACTACACAAGGCACTTCACCATGTAGCTCCATCCTACAGAGGTGTAGGCTACTCTTGCAAACATCTTTGAGTGTAGGAGGAATCTGTCTTCTGGCTGGCAGCGTTAGTGGGGTATGGAATGTTATCTCTGGGAATGACTCTTGGAATATTCTGGGTACTCTCACCCTCTTGGCGTGGGAATAGGTTCAATCGCTGAGGGGTTGATGGGTGTGTACAGATGTTGGTAATGCTGTAATCccaatgatgtaatggctttatgTGGTGACCGATCTCGCAGTGTTTTTGTCTGGAAGATTCTCACTCTGTACTTGGCAAATGCTCTGCCATTAACAACCATTCAAAGATAACTATATTTATTTTACATTAATTCACTGACAGACAGGCTTTCAAGTTTTCTCCATTTTGTTTTCATAACCACACCTTCTTTTTTTTACCATAGTAATGGTGCCACTAATGTCCTCTCAAATGTTACCAGTTAAATGTCGTTGAAAGAAATctaacaaatgttttgtccacATTATAGCTTTTTCAGTGTGATGCACTGTGCTGGACTAATGTTTGGACCTCTTTACTGTTTCAGACCCATGCCAGTTTGTCTTAATGGTAAAGTGTACATGGTCTTTTGGGCCCAGGACCATTGTTGGTTCCTGTAAGTGGGGTCGGTGTTTTCTTTGCCCAGCTCTtcttttttttcacatttctttTTTTGACCCTGTTCCTAGTTCCACTGTCTTGTCCTGTAGAGATGACGTCATGATTGTGTCGTATGAATATGTGAGCGTTACCATTTTGTGTGATGACGCGCAATGCTACCTGTATCACCAGATTATTCAAAGACACCGTATATCAGGAGTTTGACTGCGTCTTCTCTAATATAGAAAGATGTCAGTTCTGCACAGTGCATTAATTGTTAACTATAGTACTCTTCTCTTAACAGTATGTATAACTCACTCATTAATGCTGAAATATTGACTGTAAAATGTCTGAGTAACTGACTCCAGAGTACTTGATCTTTTCCTGAGAATCAGCTGGACAGGTGTTGTGGCCCTTTATCTGTTGATCCTATAGACTCCTTATGTAACAGCTCAGTCTTAACACACTGAACATGTTAAAGTAATGTACATTTATAGCAATAAAAATCCCCAATATCATATGATGGATTGTATACATTATGCTGTTATAAACGACCTACCACATTATAAAGCA
>XM_036951843.1
CTCAAATGACAAGTCATGTGATCTGTTGCTGACAAAAAAACAACTGAAACCGACGGTCTTTCGGCATTTGAAGACTCACACATCTGTCGGGGATCGATCTGATAGCTAACATGCAGAACGCCATTAATTCCGTAAAAGGCACGGCCCTTGGTGTAGCCGAGTTTTTTACTCCAGTGCTGAAGGAATCCAAATTCAAGGAGACAGGAGTTATCACTCCAGAAGAGTTTGTAGCTGCTGGAGATCACCTTGTTCATCACTGCCCCACATGGAAATGTAGTCCCAGATGTCACATCATGTTTATTCCATCCAGGGTGtctggggaagaggagaaggTGAAGCCGTATTTACCCAAGGATAAGCAGTTCCTATTGACTCGCAATGTTCCCTGCTACAAGCGCTGTAAACAGATGGAGTATTGTGATGAACTGGAAGCCATCATAGAGGAGGATGACGGAGATGGAGGATGGGTCGACACCTACCACAACTCAGGTATAGGGGGAGTTACAGAAGCTGTACGAGAAATCTCATTGGACAACAAGGACATGAACATGAATGTGAAGTCTGGTGCTTGTGGGAacggagatgatgatgatgatgatgaagacgaGGCAGCAGATATGGAAGAGTATGAGGAGAGTGGACTACTGGAAACAGATGAGGCCACCCTGGACACCAGTAAAATGGTGGACTTGTCTAAATCCAAAACGGGAGAAGCTGGGAGCGATGACATCCTGCAGACTCGAACCTATGACCTCTACATCACATATGACAAATACTATCAGACTCCTCGACTCTGGCTGTTTGGATACGATGAGGACAGACAGCCCCTGACAGTGGATCAGATGTATGAAGACATCAGCCAGGATCATGTGAAGAAAACCGTCACCATCGAAAATCACCCCCACCTACCACCCCCAGCCATGTGCTCCGTGCATCCCTGCAGACATGCTGAAGTGATGAAAAGGATCATTGAGACGGTggcagaagggggaggagagcTTGGAGTTCATATGTATCTGTTGATTTTCTTGAAGTTTGTCCAGGCCGTCATCCCCACGATAGAATACGACTACACAAGGCACTTCACCATGTAGCTCCATCCTACAGAGGTGTAGGCTACTCTTGCAAACATCTTTGAGTGTAGGAGGAATCTGTCTTCTGGCTGGCAGCGTTAGTGGGGTATGGAATGTTATCTCTGGGAATGACTCTTGGAATATTCTGGGTACTCTCACCCTCTTGGCGTGGGAATAGGTTCAATCGCTGAGGGGTTGATGGGTGTGTACAGATGTTGGTAATGCTGTAATCccaatgatgtaatggctttatgTGGTGACCGATCTCGCAGTGTTTTTGTCTGGAAGATTCTCACTCTGTACTTGGCAAATGCTCTGCCATTAACAACCATTCAAAGATAACTATATTTATTTTACATTAATTCACTGACAGACAGGCTTTCAAGTTTTCTCCATTTTGTTTTCATAACCACACCTTCTTTTTTTTACCATAGTAATGGTGCCACTAATGTCCTCTCAAATGTTACCAGTTAAATGTCGTTGAAAGAAATctaacaaatgttttgtccacATTATAGCTTTTTCAGTGTGATGCACTGTGCTGGACTAATGTTTGGACCTCTTTACTGTTTCAGACCCATGCCAGTTTGTCTTAATGGTAAAGTGTACATGGTCTTTTGGGCCCAGGACCATTGTTGGTTCCTGTAAGTGGGGTCGGTGTTTTCTTTGCCCAGCTCTtcttttttttcacatttctttTTTTGACCCTGTTCCTAGTTCCACTGTCTTGTCCTGTAGAGATGACGTCATGATTGTGTCGTATGAATATGTGAGCGTTACCATTTTGTGTGATGACGCGCAATGCTACCTGTATCACCAGATTATTCAAAGACACCGTATATCAGGAGTTTGACTGCGTCTTCTCTAATATAGAAAGATGTCAGTTCTGCACAGTGCATTAATTGTTAACTATAGTACTCTTCTCTTAACAGTATGTATAACTCACTCATTAATGCTGAAATATTGACTGTAAAATGTCTGAGTAACTGACTCCAGAGTACTTGATCTTTTCCTGAGAATCAGCTGGACAGGTGTTGTGGCCCTTTATCTGTTGATCCTATAGACTCCTTATGTAACAGCTCAGTCTTAACACACTGAACATGTTAAAGTAATGTACATTTATAGCAATAAAAATCCCCAATATCATATGATGGATTGTATACATTATGCTGTTATAAACGACCTACCACATTATAAAGCA

Function

NR:

description
ubiquitin-like-conjugating enzyme ATG3 isoform X1

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0043653 mitochondrial fragmentation involved in apoptotic process biological_process
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0019776 Atg8 ligase activity molecular_function
GO:0019777 Atg12 transferase activity molecular_function

KEGG:

id description
K08343 ATG3; ubiquitin-like-conjugating enzyme ATG3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570956.2 False 2241 mRNA 0.43 12 11766363 11772739
XM_036951844.1 False 2344 mRNA 0.43 12 11766364 11772739
XM_036951843.1 True 2274 mRNA 0.43 12 11766366 11772739

Neighbor

gene id symbol gene type direction distance location
LOC110495615 LOC106574963 coding upstream 7075 11749729 ~ 11759288 (+)
LOC110528750 LOC106575767 coding upstream 309484 11453014 ~ 11456879 (+)
LOC110495609 LOC106590510 coding upstream 345460 11362611 ~ 11420903 (+)
LOC110527285 LOC106574778 coding upstream 551366 11213513 ~ 11214997 (+)
LOC110514120 NA coding upstream 577079 11093586 ~ 11189284 (+)
LOC110495619 slc19a2 coding downstream 375 11773114 ~ 11779870 (+)
LOC118941042 LOC105005823 coding downstream 18862 11791601 ~ 11802738 (+)
LOC110495630 LOC106575789 coding downstream 30438 11803177 ~ 11808380 (+)
trnas-cga-32 NA coding downstream 36170 11808909 ~ 11808990 (+)
LOC118941095 LOC106575791 coding downstream 36304 11809043 ~ 11814232 (+)
G1517042 NA non-coding upstream 1606 11705552 ~ 11764757 (+)
G1517073 NA non-coding upstream 8397 11757256 ~ 11757966 (+)
G1517014 NA non-coding upstream 114084 11632537 ~ 11652279 (+)
G1517010 NA non-coding upstream 141085 11624596 ~ 11625278 (+)
G1517002 NA non-coding upstream 157520 11608248 ~ 11608843 (+)
G1517065 rgn non-coding downstream 44616 11817355 ~ 11820418 (+)
G1517095 NA non-coding downstream 64605 11837344 ~ 11837614 (+)
G1517060 NA non-coding downstream 65788 11838527 ~ 11841346 (+)
G1517101 NA non-coding downstream 88633 11861372 ~ 11862045 (+)
G1517150 NA non-coding downstream 167323 11940062 ~ 11941897 (+)
G1517019 NA other upstream 122605 11642789 ~ 11643758 (+)
G1517015 NA other upstream 131384 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 673809 10978682 ~ 11092554 (+)
G1516637 NA other upstream 749274 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1439225 10310107 ~ 10327138 (+)
G1517414 LOC106575752 other downstream 1060912 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1161915 12934654 ~ 12936278 (+)
G1517457 NA other downstream 1164784 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1414362 13187101 ~ 13188080 (+)

Expression


Co-expression Network