LOC110495619 (slc19a2)


Basic Information

Item Value
gene id LOC110495619
gene name slc19a2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11773114 ~ 11779870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951842.1
TCGTCATTTTACTGCGACGCACAATATTTTCACTTGGTTTTCCATATTGCTGTCAGATCAAATCTAGTGACAGTGGTGCGTGGAGGTCATGTTATGGTGTGCTTTTTTGGGTTGACATGTCTCAACTATATCCCACGATCTTACTTTGTGTTTATGGATTCTTCTCTAATCTCCGACCTTCTGAGCCTTTCTTAACTGCGTTTTTGATGGGACCTGATAAAAACCTTACTGAAACAGAGCTTGTAAATGAAATCTACCCAATATGGACCTATTCCTACCTCGTGCTACTCTTCCCAGTCTTCCTGGCCACGGACTACCTGTGTTACAAGCCTGTGCTGATCCTGCAGGCGGTGAGCTTGGTAGTGACCTACTTTATGCTAGTGAAGGCCCAGGGCGTGCTGGCCATGCAGCTTCTGGAGTTGTTCTTTGGCCTCGCCACTGCCACAGACATAGCCTACTACTCTTACATCTACAGTGTGGTGGAGCCGGCCCAGTACCAGAGAGTCACTGGTTACTGTCGTAGTATTACGTTACTGGGCTCCGCTGCTGGCTCGCTGGCTGGGCAGCTGCTAGTGTCTGTGGCTCAGATCCCACTGCTCTACCTCTGTATTATCACATTGGTGTCGGCCGTCTTGGCCTTCGTGGCGCCCTGGTTTTTGCCCATGCCCAGTAAGAGCTTGTTCTTCCATAAGCGCcaggggacagagggggagaagcCGGTGCATCAGAACAGCAGGGTTCCCATGGATGAAGCAGAGGACCCTGAGAGCAAAGTACCTCTGAAGATTGATGAGGTCACCATGGTCGTGACGGCCAGTGATGGGGGTGGAGCTAGCAGTGGCTTAGTGGACGTGTTAAGGATCCTATGGGAAGACTTCCTGCAGTGCTACTCATGCCCTGCCCTCCTGTCTTGGTCGGTGTGGTGGGCCCTCTCTACGTGTGGCTACTTCCAGTTGGTCAACTATGTTCAGGCCCTGTGGGAGAAAGTCCTGCCTTCCCAGGAGTTTGAGATCTACAATGGATACGTGGAGACAGTCTCCACCTTGTTAGGTGCGTTAGCAGCCTTCGGGGTGGGCTCCATCAAGGTCCCCTGGGCAGTCTGGGGAGAGCTGGCTCTCTGCATCTTCTCAGTGGTCATGGCTGTGGCTGTGTACCTCATGGACACCATCAGGAACATCTGGGTGTGCTACACCTCCTATGTGGTCTTCAGAGCCACCTACATGCTGCTGATAACCATCGCTACGTTTCAGATTGCTGCCAACCTGAGTATGCAGCGATATGCCTTAGTGTTTGGAGTGAACACTTTCATTGCCCTGCTGCTTCAGACTCTGCTTACTGTTGTGGTAGTGGATTCTGTCGGGCTGGGCCTGGACATTTTCCCACAGTTTCTCATATACGCCAGCTACTTCGCTGTGATCGCAGTGATCTTCCTCATGGCCGGGCTGTACAAGCTGATGTTGAGGAGAAGATCCCAGCCAGCGGCCCAGCCTCAGACTGATAGTGGAGAGACTGAGTCAGACTGCCTTAGCAGAGACTCTCCTCCCCTCAACGAGCTGCAGCAGATCACAGGGACATGACTACCTGTTTATGGTGCAGTACTAACAAAGAGGAACACGTCAGGACCAGTGTTGGACCCAATTCCACTTAAACTCAGTCAATTCAGGATgatttgaaatggaattgaccccaaccggGGTCATCACACCATGCAAGTGTGTTGTACGCCTTCGCTTGCTCAAGCACATGGTTGATGGATTGGGTGCAGGCCTAAAAACACTTGCAGAGTGTAACATTTGAATGTTTCTATGATAGCCTTATGGGTTTAATGAAAATGTGTAGTTTGCCTATATTTAGGCTTTGTTTGTGACTTCCAATTTTTTTTGTCACACAAGCTTTGTTTGTGGTGTATGTTGCATAATGGTCGTCGGCCTGCTATCTGATTTTCACACTTTAAATCCCTGTCTTAACTACCAAAGGCAGTCAACGGATAAGCAATACATGTTACATTCTGAACTGCTAGAAATATGTTATGAATTGTTAGAGTTCAATTGTTGCAAGAATAGCTTTTTATCAAATGTACCCACAAGCATCGATTCAAATGTCGCAAAGATTTCATTGATCAGCAATAGATTGTCAAGTGTCTTTAGATAAATATGGCCATACATTCATGGGTCAAAAATGAAAAGCATATGTAAGTGATTGACATGGAGTTGGAGGCCatatttacagtatattattGGATTATATTCACTGGCCTTGAATGTAGGTCTACTACTGAAGTGGTTCAGCTATACTGTATTAATACAAATTAGCTTCTTCTTTTACTATCGATACAAATCCCAGTAGTTGAAAGGCTGAGCGCTGTAGCAGATGACTGAAGGGGATGATTATGTACTGAGAGCTGATTCAGTGTTGTCTGGTGGTCACTGAAAGACCAAAAGCACCTACAGTACATGTTCTAACTTACCGGTTACACAATGTGCTGCCTCTGTTACAAGAGCATCCCCTAAAATAGTCAAAAGTTTAGCCTCGTTCTGTTTTCTTCAGTCATAATGAGAATCATGTTGGTAACATATTTATGTCATGATACTAAGGCctggattcaatcagatcaagtgtTAACCGCTGTTAGCTGACACCCGCTAATCGAGGTGTAGatgacatctcacattccagtgttctaaCTTGTAAACGACTGCATAGGACTTCTCTTTAACGGGACTCCATGCAGCAAATGGCGAGGTCCGCTTTAGGTGTTATGCTGGGAGCAGCTTGtagatttgacagctctaaaaCATTTCCACCgccaaaacaaccgctatgcAGATGTCTGCTAAagcagttccacctccgacaccgccaaaacaaccgctatgcAGATGGTATGATTGAACAGAGCACCTAATTATAGTAGGCATTTTAAGAAACAATTCatgtttattttatattttaacaATATGTTCATTTTGACTTCACACTCACTACATTCTCACTACATTCTCTCTTCAGTCTTCCCTGTTTTTGTTCTTATGTGTAATGTTTTTCAATAAACAAATAGTTTTGTAGtataaaatgtt

Function

symbol description
slc19a2 Predicted to enable thiamine transmembrane transporter activity. Predicted to be involved in thiamine transport and transmembrane transport. Predicted to act upstream of or within vitamin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in diabetes mellitus; megaloblastic anemia; and thiamine-responsive megaloblastic anemia syndrome. Orthologous to human SLC19A2 (solute carrier family 19 member 2).

NR:

description
thiamine transporter 1-like isoform X1

GO: NA

KEGG:

id description
K14610 SLC19A2_3, THTR; solute carrier family 19 (thiamine transporter), member 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951842.1 True 3077 mRNA 0.46 6 11773114 11779870

Neighbor

gene id symbol gene type direction distance location
LOC110495622 LOC106575786 coding upstream 375 11766363 ~ 11772739 (+)
LOC110495615 LOC106574963 coding upstream 13826 11749729 ~ 11759288 (+)
LOC110528750 LOC106575767 coding upstream 316235 11453014 ~ 11456879 (+)
LOC110495609 LOC106590510 coding upstream 352211 11362611 ~ 11420903 (+)
LOC110527285 LOC106574778 coding upstream 558117 11213513 ~ 11214997 (+)
LOC118941042 LOC105005823 coding downstream 11731 11791601 ~ 11802738 (+)
LOC110495630 LOC106575789 coding downstream 23307 11803177 ~ 11808380 (+)
trnas-cga-32 NA coding downstream 29039 11808909 ~ 11808990 (+)
LOC118941095 LOC106575791 coding downstream 29173 11809043 ~ 11814232 (+)
LOC110497058 LOC106575722 coding downstream 106003 11885873 ~ 11926209 (+)
G1517042 NA non-coding upstream 8357 11705552 ~ 11764757 (+)
G1517073 NA non-coding upstream 15148 11757256 ~ 11757966 (+)
G1517014 NA non-coding upstream 120835 11632537 ~ 11652279 (+)
G1517010 NA non-coding upstream 147836 11624596 ~ 11625278 (+)
G1517002 NA non-coding upstream 164271 11608248 ~ 11608843 (+)
G1517065 rgn non-coding downstream 37485 11817355 ~ 11820418 (+)
G1517095 NA non-coding downstream 57474 11837344 ~ 11837614 (+)
G1517060 NA non-coding downstream 58657 11838527 ~ 11841346 (+)
G1517101 NA non-coding downstream 81502 11861372 ~ 11862045 (+)
G1517150 NA non-coding downstream 160192 11940062 ~ 11941897 (+)
G1517019 NA other upstream 129356 11642789 ~ 11643758 (+)
G1517015 NA other upstream 138135 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 680560 10978682 ~ 11092554 (+)
G1516637 NA other upstream 756025 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1445976 10310107 ~ 10327138 (+)
G1517414 LOC106575752 other downstream 1053781 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1154784 12934654 ~ 12936278 (+)
G1517457 NA other downstream 1157653 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1407231 13187101 ~ 13188080 (+)

Expression


Co-expression Network