LOC118941042 (LOC105005823)


Basic Information

Item Value
gene id LOC118941042
gene name LOC105005823
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11791601 ~ 11802738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951383.1
ATCCAGTAAGCATCATAGAGGATAGCCATGCCTGCTGTCAGCTAATGGTTCACACAATCTATTCTGTCTGATCAGTTCAAGTAGCCCAACGACAGGGTGTACCGGTGGTACAATAAAGCGCGTTGCATATTTATTTGATTCTAAACTGTTGGTGCCAAGTTTCAACAGTCACCAGACATGGCTTTAGTTGGAGTTAGAGCTTCATACCACAGGATTCTTAACCAGATAGAGTTTCTACTACCTGGTAAACTGAGACCCATTTACAACCATCCTGCAGGTCCAAAGACAGTTTTCTTCTGGGCACCAGTGTGTAAATGGggTCTTGTTTTTGCGGGTCTGGCTGATATGACCCGACCGGCTGATAAACTGAGTCTCTCTCAGTCTGGAGTACTCATGACTACAGGTGTTATTTGGTCCAGATGGTCCCTGGTCATCATTCCCAAGAATTGGTTTCTGTTTTGTTGCAACTGTTTTCTTGGTGCGTCAGGAGCCACTCAACTCTTTAGAATCTGGATGTACCAACAGGAGGTAAAGAAGCAACAAGAAGCAGAGGCTGCTGAACTAAAAATAAAGCAGTTAGCAGAAGCCCATCCATTGTTGGATTATTTAGAACTAGCGACACTAACTAACTAGTGGATCTGATTAACTTGATTAAATGCAATTTCATCTTTGAGGACATCAACGACCACAGAATCGTCCAACTCAATAACACCCTTCCCTCTGCAAAACACAATTCATGCTGTTAATGAATAAGTATGAGGTGATGATGTGAGGATGACAGCACGTCTGCGTGAGGATGATGGTAAAATATTAGTAAAAGGTAAGATTAGGCAAAGAAACATACACATTTACAAATTCACACAACACTTTAAAGATGGTGAATGTTTGAGACTGATGATGGTTAATGTTGTATTTTTCAACACTAACACTTTGTTTTAGCCTTTTAC

Function

NR:

description
Brain protein 44

GO: NA

KEGG:

id description
K22139 MPC2; mitochondrial pyruvate carrier 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951383.1 True 947 mRNA 0.41 5 11791601 11802738

Neighbor

gene id symbol gene type direction distance location
LOC110495619 slc19a2 coding upstream 11731 11773114 ~ 11779870 (+)
LOC110495622 LOC106575786 coding upstream 18862 11766363 ~ 11772739 (+)
LOC110495615 LOC106574963 coding upstream 32313 11749729 ~ 11759288 (+)
LOC110528750 LOC106575767 coding upstream 334722 11453014 ~ 11456879 (+)
LOC110495609 LOC106590510 coding upstream 370698 11362611 ~ 11420903 (+)
LOC110495630 LOC106575789 coding downstream 439 11803177 ~ 11808380 (+)
trnas-cga-32 NA coding downstream 6171 11808909 ~ 11808990 (+)
LOC118941095 LOC106575791 coding downstream 6305 11809043 ~ 11814232 (+)
LOC110497058 LOC106575722 coding downstream 83135 11885873 ~ 11926209 (+)
LOC110527250 LOC106575686 coding downstream 205216 12007954 ~ 12021342 (+)
G1517042 NA non-coding upstream 26844 11705552 ~ 11764757 (+)
G1517073 NA non-coding upstream 33635 11757256 ~ 11757966 (+)
G1517014 NA non-coding upstream 139322 11632537 ~ 11652279 (+)
G1517010 NA non-coding upstream 166323 11624596 ~ 11625278 (+)
G1517002 NA non-coding upstream 182758 11608248 ~ 11608843 (+)
G1517065 rgn non-coding downstream 14617 11817355 ~ 11820418 (+)
G1517095 NA non-coding downstream 34606 11837344 ~ 11837614 (+)
G1517060 NA non-coding downstream 35789 11838527 ~ 11841346 (+)
G1517101 NA non-coding downstream 58634 11861372 ~ 11862045 (+)
G1517150 NA non-coding downstream 137324 11940062 ~ 11941897 (+)
G1517019 NA other upstream 147843 11642789 ~ 11643758 (+)
G1517015 NA other upstream 156622 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 699047 10978682 ~ 11092554 (+)
G1516637 NA other upstream 774512 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1464463 10310107 ~ 10327138 (+)
G1517414 LOC106575752 other downstream 1030913 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1131916 12934654 ~ 12936278 (+)
G1517457 NA other downstream 1134785 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1384363 13187101 ~ 13188080 (+)

Expression


Co-expression Network