LOC118941095 (LOC106575791)


Basic Information

Item Value
gene id LOC118941095
gene name LOC106575791
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11809043 ~ 11814232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951851.1
TATCGACAAAAGCAGTTTCTGCTTATATAGCCCTAGTTGGATTTCGAAAAAGCTATATGAAGAATTTATGCTTTATTATTGGGGAATGAGCTCTGAACGTAACACGCCCCCTTGATAACCATGTGTTGTTCTCGTCTCCCTAATTTTGACAGCTGTAAATTAATTTGAACCTGATTTGAACGATTTCCACCATCACtacttgtctctctttctcgcttcaGTGACTTTAATCAAATATGTCCGCCATTGTGCCAAACGATGCTCAATTCTTGATAAAAGACATAAGGTTGGGATTGAAGAATTTAAATTTAATCTTTATTGTGTTGGAAATGGGAAGGGTAACTAAAACAAAGGATGGGCATGAGGTTCGCTCCTGCAAGGTGGCTGATAAAAGTGGGTGCATCACCCTGTCTGTGTGGGACGAGGTGGGTGGACTCATCCAGCCAGGAGACATCCTCCGCCTCTCACGaggctatgcatccctgtggaagggCTGTCTGACACTCTACACAGGCAGAGGAGGAGACCTGCAGAAGATAGGAGATTTTTGCATGGTCTTCTCTGAGGTGCCAAACTTTAGTGAACCAAACCCAGAGGTACTGGCCCAGGCCAACAGGCCGtctaaaGTTGAGTCCCAGAACAGTTCTTCTGTCAGTCAAAGCTCCACCCCCTCAGTCCCCACCCTCACATACTCTTCCAATGGATGCTCTCCGCTCTCCCGGAATCCAACCTATGGGAGCACAGGACAGCAGACTGGGCGAGGCTCCGGAGGTCCTGGCACCGACCCCAAGCCCACAGAATCTGTGGGCAACAGCAGGGACCCACGGCAAGGGCTAAAGAGGAAATGACGCTGGTTTCAAATCAACACGTATCTTGGGCCTGGCTGTATTTTTATTTAGCAAGCTAAATAATTTTTGTTAACGTGGCCATCATTTTCTAAGGAATGTTACACATTTggttcaaataaataaatcataacTAAAAGATTTTGGGGGTTTGAGGTAAAGTTACTCAACTCACTCCAACTGTTCCAACACGTCCGTACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCGTACCGGCAGATAGCCTGACCCCCTTTCAACACGTCCGTACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCATACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCGTACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCGTACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCATACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCATACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCATACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCATACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCATACCGGCAGATAGCCTGCCCCCCTTTCAACACGTCCATACCGGCAGATAGCATGCCCCCCTTTTATTTGCAGTAGGTAGAAGTTGTTTCTTGGAAAGAGGCAAAGAGTGAGACCAGGTTAGAGGACTTTCTCTTGAATATTTCTGGAACACTGCAGATTCTAGTGAGAAAATGTCCTTCCATATAAATCACACAGAGGAACAACACCCTACCAAGCACATCCAAGAGAGatagacctactcattcaagggttttgctttatttgtcctgttttctacattgtagggcTAGCCAATGGAAGTCCATAGAGTCACTCCTCCCAACAAAATAATGTGAGAGACTAGCTCCCTATGAGTCCAGTAGGCTATAAAAGTCTGAGATAAAATAAAAAGTATGCCTATGCTAGTTCAGCATTTGAGTAAAAGTTCACAGAAGATTCACAAGTTAACTAGCCTACATATAAATTCAGATCAGTCCAAAGTCcacagggtatgtgtgtgtgagctggaGGTGAGCTTCTCCGGGGGGagagaaacacaagcaatgaccGCCTGACGAAGGCTCCTGCAGTCAGACAACTTAACTGTGGTGCAGGATGTTGTGTGCTGGATTTCCTTTCTATTCAGAGTCAAGTTATGTCCCAGCTAGTCTGCTATTGACTTCCTGTTTATAAGCCTTGTCCCCTGACCAAGACCAATGGTATGTTCTTCCTAATTCTACCAAGTCTAAAAATGAAACTGAAAGTCTGTCAATGTGGGTGgagacagtgtttctgtagtagCCAGAAGGTTTTTCCATTTGGTTAGTTTGCAAAGACAATGGACAAATACAGACCGAGTGCCTGAGAGAAGTTTGAGGTGTTAGCTGCTAACGATTGCTCCACGATCAGCTACAGACACATATCCTTACTGGTTTGAGAGGCTTTCACTTTTAACAACTGTTCTCAGACCAATCATGCTTGACGAGGGTGTACGCTATGAGGCCCTATCAGCTGCAATGGGAGCCACGGTGAGGCCCTTGTCCGACTTTCAGAGGAACAACCCTGGCAAGACACCTGAAAACCTTTTGACTGTTGAAGGCTTTCTCATCGGTTCTGTCCTGGGCGTCACCTCTCTCCTGCAGTGGCTCAGCCCTGTCTCATGGTTGACATGGGGGTTATCAGTGCTTTTCTTCGGCCAGGACAAAAGAAAGGTAATCAACACCGAACTCTTTGTGGATGAGGCAACATTCTTCGACAGGGAGTTCGATTATGACTTCACCGACGTTTCCGACTCTGAGAGTTTTGTGAGGGGCGATGAGAGTTACAAGCGACCGTGTGGATGGAAACGGATCGCGTTGAAGGTTCTGGACAAATACGGAGATAACACATGGCTCGGTCCAAACGGGATTCGGACATACTCATACCCCGGGGAGTGGCCAGTGTCATACCACGGTACCAGCGAGGACGGGGCTAAAGGCATCATCCAGTCCCACTATAAAGTCGGAGACAGGCAGCTCTACGGGCGAGGCATCTACTCCACTCCTGACCTCAGCCAAGCCAGCGGCTACGCTAGAGACTTTGTGTCGAAGACAAAcgggaaaacctacaggatggtccTTCAGAACCGTATCAACACAGCCCAACGGAAGATCTGTAAGAGAGTTGACTACTGGCTTGTTCCAGTTAATGATGGCACAtctgaggaagaagagaggaggattgTGGAGAGCTCCATCCGCCCCTATGGGATTCTGCTGAAGGAGATGTGAAGGGGCATGTGATAAGAGAAGGTAAACCAAAGTCATAGGGAAGGTGTCAATTACATactcctcgcgtcctctctcctcgTACCTTTCTCAAAACCCATTACATGAGAAAGCCAGAGTTCCTTCCCCTCAGACCTTCTCTTCCAATctgttttgagaaggagacaaggagtttgcaattgagatcttcccatATAGAGACTTTAGAGCAGGAGGCCATATTGCTTATTTTTCAGAAATAATTGCCTTTTGAAGGAGTTAGATTATATTTCATTAATTAGATTTGAACTGCTAGATATTCCGTCGTCTTTCTTCATTTTACAGTTGTCTGTCTGTATCAGTGAAGTGCCTTACTGTGTGCCATTTGTGAATTACATCTATGTTTATGTAACATGTGTTCActatattttctacaatgtatccATTTTTCTACTGTTAATGGTGTGGCATTAATTATGCACCTTGTTAGGTGAGTTTAAATGGATCTTTTGTTCAGTGATCTGCCATTTCTGCTttttccttgtttttttatgattaaatgtattattatgttTCACCATACACTTATCGACCTTTTTGTTAGCTTCAGTTTTAGTTTCCTCTAGAAAATTAAACTAGTGCCAACAGATCTGTCCCTACAACATGTTGTACTGCACTTCTGCTGTTTGAACACAGGAGGGCAGCACACAGTTTACATGACTATTTCTCAGTGTAGTCATTCTCAGCTGTGAAGAAGTGGTTTATTTTATAAAGTCACACCTGCTGTAACATGACTATTTCTCAGGGTAGTCATTCTCAGCTGTGAGGAAGTGGTTTATTTTATAAAGTCACACCTGCT

Function

NR:

description
uncharacterized protein LOC110495623

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0070876 SOSS complex cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951851.1 True 3995 mRNA 0.46 6 11809043 11814232

Neighbor

gene id symbol gene type direction distance location
trnas-cga-32 NA coding upstream 53 11808909 ~ 11808990 (+)
LOC110495630 LOC106575789 coding upstream 663 11803177 ~ 11808380 (+)
LOC118941042 LOC105005823 coding upstream 6305 11791601 ~ 11802738 (+)
LOC110495619 slc19a2 coding upstream 29173 11773114 ~ 11779870 (+)
LOC110495622 LOC106575786 coding upstream 36304 11766363 ~ 11772739 (+)
LOC110497058 LOC106575722 coding downstream 71641 11885873 ~ 11926209 (+)
LOC110527250 LOC106575686 coding downstream 193722 12007954 ~ 12021342 (+)
zswim2 LOC106574814 coding downstream 224510 12038742 ~ 12045602 (+)
dytn LOC106574817 coding downstream 234747 12048979 ~ 12060014 (+)
LOC110538823 LOC105019738 coding downstream 254817 12069049 ~ 12080939 (+)
G1517042 NA non-coding upstream 44286 11705552 ~ 11764757 (+)
G1517073 NA non-coding upstream 51077 11757256 ~ 11757966 (+)
G1517014 NA non-coding upstream 156764 11632537 ~ 11652279 (+)
G1517010 NA non-coding upstream 183765 11624596 ~ 11625278 (+)
G1517002 NA non-coding upstream 200200 11608248 ~ 11608843 (+)
G1517065 rgn non-coding downstream 3123 11817355 ~ 11820418 (+)
G1517095 NA non-coding downstream 23112 11837344 ~ 11837614 (+)
G1517060 NA non-coding downstream 24295 11838527 ~ 11841346 (+)
G1517101 NA non-coding downstream 47140 11861372 ~ 11862045 (+)
G1517150 NA non-coding downstream 125830 11940062 ~ 11941897 (+)
G1517019 NA other upstream 165285 11642789 ~ 11643758 (+)
G1517015 NA other upstream 174064 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 716489 10978682 ~ 11092554 (+)
G1516637 NA other upstream 791954 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1481905 10310107 ~ 10327138 (+)
G1517414 LOC106575752 other downstream 1019419 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1120422 12934654 ~ 12936278 (+)
G1517457 NA other downstream 1123291 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1372869 13187101 ~ 13188080 (+)

Expression


Co-expression Network