LOC110527250 (LOC106575686)


Basic Information

Item Value
gene id LOC110527250
gene name LOC106575686
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12007954 ~ 12021342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951864.1
AGGATGCCACCGTAGTGGATCAATTTCAATTTGAAGCTCGAGCTCCTCTCCTCGCTTTTACCGTAGAGCACACTGGATTGAACCATTAGTGAACGGACAACCGGACTATTGGGCTCTGGGAAAAGGGTCGGGAAAAGCAGAATTCGCTATTTTCTTCTCATTTGAAGGCGACATTTCTCAGTAAGgACCCGTTGACAGCAGAGCCAGGATGGATGCTAACGGCATATTCTCACTTCTGTTGCTGTGTTCTGTCACTGAGctgtgtgtgttggcGAGCCCTGAGGGGAATGACTCCCAGCAGCACCATACCCAGAACGTCTACCACGACATCGGTGTCACCAGGAACACCATAGTCACTGCTCAGTTTGAGTGCTATCAGAAGATCATGAAAAACGACAAACACAACAAAATAGGGCCAGTTTGTAACAGGACGTGGGATGGCTGGCTGTGCTGGGAGGACACAGAGGCAGGCTTCACTACAAACCAACACTGTCCAGACTACTTCCAAGACTTTGACACAGCAGAAATGGCATCCAAAGTGTGCAGTGAAACGGGTAATTGGTTTCTACACCCGGAGAGCAACAGGACATGGACAAACTACACCAAATGTACGGCATACACCAGTGCAGGAAGAGTGACAGCGATGAATCTCTACTACCTGGTTCTGATTGGACATGGACTGTCGCTGACGTCATTGTTCTTCTCATTGGGAATATTTTTCCATTTCAAGAGTCTAAGCTGCCAGAGGATAACGCTCCACAAAAACCTATTTTTTTCATTTGTGTTGAACTCGGTCATCACCATCATCTGGTTGACAGCGGTGGctaacaaccagggactagtGCAGAGCAACCCTgtgagCTGTAAGGTGATCATGTTTATTCACCTGTACCTGTTTGGCTGTAACTACTTCTGGATGCTGTGTGAGGGCATCTACCTGCACACACTCATCGTCGTGGCTGTGTTCGCCGAGAAACAACACCTCATGTGGTACTACCTGCTTGGATGGGGATTTCCACTCATACCTGCATTGATACATGCAATAGCACGAAGCTACTACTACAATGATAAtTGTTGGATCAGCTCCAACACTTCCCTCCTCTACATTATCCATGGTCCCATCTGTGCTGCCCTGCTGgtgaaTCTGTTCTTCCTGTTAAACATTGTGCGTGTCCTCATCACCAAACTGAAGGTGACCCATCAAGCTGAATCTAGCCTCTACATGAAGGCTGTGAGAGCCACCCTGATCCTAGTCCCTCTCCTGGGCATCCAGTTTGTCTTGTTCCCCTACAAACCCCAGGGACGCTTCGCCTTGGAGATCTACGACTATATTATGAACATCCTCATGCACTACCAGGGTCTCCTGGTTGCCACCATCTTCTGCTTCTTCAATGGGGAGGTCCAAGGTGTTTTGCGAAGGCACTGGAACCAGCAGAGGATCCAGTTTGGCAGTAACTTTGCCCATGCAGATGTCTTCCGCTCAGCCTCATACGTGGCGTCATCCCTGACGGAGGTGCATCGCTGCTACAGCATCGACGGGCACACCGAACACATGAACGGCAAGAACAGCTACCACGACGTCGAGACGGTGACACCCACCATACTCCGGTCGGACAACCCGTTTGCCTGAGGCTGAAGGTCGGAAGTCGTGGGTCTTGGGTCTGTACAGTTACACAGTGGCAGTTAAACTTTTAGTTGAAATGGCTGCAGACAATTTGGAACTCTTTTCCCACCATATTCTAGAACATTTTCTCAAACTTCTTGGCAGTAGCCTTCACAGCAATTGGATGATGGTGAAAAAGTACATGAACGTTTATAGGGAGCACTACTCAGCCTCTTGATCTGGTCAATACAGTTACCTTCAACTGATCCACTTTAACTTCACGAGGACAGAATAGGCACTTAACTAGAGACACCTGTGTAAAGGCATGGACACTACCTACACTACCTTAAGGGTTTTAGTGTGAGGAATGGACACTACCTA

Function

NR:

description
calcitonin related peptide type 1 receptor-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004948 calcitonin receptor activity molecular_function

KEGG:

id description
K04577 CALCRL; calcitonin receptor-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951864.1 True 1984 mRNA 0.48 14 12007954 12021342

Neighbor

gene id symbol gene type direction distance location
LOC110497058 LOC106575722 coding upstream 81745 11885873 ~ 11926209 (+)
LOC118941095 LOC106575791 coding upstream 193722 11809043 ~ 11814232 (+)
trnas-cga-32 NA coding upstream 198964 11808909 ~ 11808990 (+)
LOC110495630 LOC106575789 coding upstream 199574 11803177 ~ 11808380 (+)
LOC118941042 LOC105005823 coding upstream 205216 11791601 ~ 11802738 (+)
zswim2 LOC106574814 coding downstream 17400 12038742 ~ 12045602 (+)
dytn LOC106574817 coding downstream 27637 12048979 ~ 12060014 (+)
LOC110538823 LOC105019738 coding downstream 47707 12069049 ~ 12080939 (+)
LOC110527243 LOC102778049 coding downstream 72560 12093902 ~ 12161272 (+)
LOC110528736 LOC100693318 coding downstream 163367 12184709 ~ 12214234 (+)
G1517176 NA non-coding upstream 10295 11996301 ~ 11997659 (+)
G1517174 NA non-coding upstream 13011 11993702 ~ 11994943 (+)
G1517150 NA non-coding upstream 66057 11940062 ~ 11941897 (+)
G1517101 NA non-coding upstream 145909 11861372 ~ 11862045 (+)
G1517060 NA non-coding upstream 166608 11838527 ~ 11841346 (+)
G1517110 ef1b non-coding downstream 46042 12067384 ~ 12068234 (+)
G1517202 NA non-coding downstream 64548 12085890 ~ 12086420 (+)
G1517204 NA non-coding downstream 67328 12088670 ~ 12088910 (+)
G1517206 NA non-coding downstream 68045 12089387 ~ 12089608 (+)
G1517019 NA other upstream 364196 11642789 ~ 11643758 (+)
G1517015 NA other upstream 372975 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 915400 10978682 ~ 11092554 (+)
G1516637 NA other upstream 990865 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 812309 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 913312 12934654 ~ 12936278 (+)
G1517457 NA other downstream 916181 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1165759 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2413420 14434762 ~ 14436120 (+)

Expression


Co-expression Network