zswim2 (LOC106574814)


Basic Information

Item Value
gene id zswim2
gene name LOC106574814
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12038742 ~ 12045602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608408.2
CCAAGGCATCTTTCTGGATTACCATGACTACGGCAAACAGGTGTCTATTAGTTGTTGCTGCTTACGTCAGTTTCAGAGCGTTTAACaataagctagctagctgcatagTTAGCTACTAAAGTTTAAACCTTTGCTGATATAGCAGGGCACGCACATCGACTTAGTATGAAGACATGGCTCTAGTCTTGTCTCCTCCTCAGTCCTCTTCCCTAGAAATTCTGTGAGAGTTGTGCTATGTTCAGAAAAACTGTCTGGAAGAATACCGTGAGTGATGCCGTTAGCTGGCACCAGGACGAGGCCCTGAACACGACCATGTTCATCCTGAAAGAGTATGGTCCGACCGGATTCCTACTCAAAGAGGAGGGGGAACCCAAAAACTTCAAAGTGTTCTTGGGAGACCCTCATACGTGTACCTGTTCAACATTCCACAAAGAGAGAGACCTCTGCAAACACATCTGCTGGGTTTTATTGCGGAAATTCCGACTGCCTAGAGAACATGAATATTGCTTCCAGCAGGTCCTGGTTGAAAGGCAGATCCTGGAGCTGCTACAGGGTTTACACAGGAGCAGAACCCCCCGGCCTGTACACCCACCCTGCTCTGAGGCTGACCCTaaccccagaccagacccagctgagGGGGACGGGGGGGTCAGACAGAAGGAGATCGAAGCCGAGGATGTGTGTCCCATCTGTCAAGAGGAGTTGCTGGGGAAACGTCTGCctgtgtcttactgcagGTTTGGCTGTGGCAACAACGTCCATATATCCTGTATGAAGGTGTGGGCAGATCACCAGGCATGTccggagggggagggggaagccATGGTGAAGTGCCCGCTGTGCCGGGAGGACTTTGGGCCGGTCAAGCTGCTCCTGGAGCAGGTGAGGAATGTGGCTAAGCTCCACAcagctgctgagagagagaggcccgaCAGACACCTCGGGGTGCTCTGCAACAACTGCAGGGTTGGCAAGTGCTTCAAGTGCACAGTCTGCCGGTACTATCACCTTTGCGAGGACTGTATAAGAAGGTGCTGTCACCCTCAGCATGCGTTTGCCATACGTACGAAAAGGACTGCGAAGTGGCTGTCCTTGGGTCAGCGTGTGTTCAACACACTGGGTGAACCACGTGAGATGACCACTCAGTCAGTGGGTGACAGCATGATTCCTGTTGAGAGTGACCCACTGCCAGAGCACCTGGTCAGGAGCCTCCTTTCGGTCAGGGTGAGGAGAGGCTGCCCCCTGCTGGACCCTGGGCAGCAGTGTAGGATCTGCCTGAAGAGCTTCCAGCAAGGGCAGCAGGCCAGACACTTGCCCTGCCATCACAGGTTCCACACAGACTGTGTCGACCCGTTGCTTCGGAGGTCCAACTCCTGCCCTCTGGACGGATACGTCATCTACAACCCCCTAACATGGAGCAGCGGAGGGGGGAAGGGTACACCCAAGCTGGCCTCCTCCCTTGACCATCCAAAGCTCTCAGAGCAGCACAGACTGGAGCTGTTTGTCCCAGGAGTAGCTCTGCTGGACAGAGCAGCCAGAGTGGTTCCCTCCCTGAGTATGTTCAGCTCCGAGGGCTCAGCCGATACCCTAGTACCTCTCCCTCAGGACACTATGGTCGTCGGCTTACAAGGTCTATGCATCATCAATACAGTGAACATTGAGAGCATGGAGGGTGGAAAAAGCAGGACAGAGAAAGATGGAAGTCCAGTCAAATCAGTCATTCTCAACAAGAGCCTTTCCTCCCAGCATCTAAGGACAGACGTGTCTAGAGTGAGGTTGGGACGCACCAACTCAAGCTCCTCGACCAAGAGTTTGGCCCAAAACAATGCTACCTCAACTAACAGGCTGGGTGGGGTCTCTGGAGGGACGGGAAGGGCCCAGCCGAGTCTGTTTGTGGGTGTAAACAGGTCAGAcatgactgctgctgctgctcagaCTAGAGCTGTCATCACCCTGTGGAGAGCCAGGCCCCAGTGGAAGAGGAGACCCAGGGTACCCAGACCCAGTACAGGAGACAGCCAGCAAGCCACAGGCCTGAGGATGACAGGGGTACTGATCAATGCTCCTCACCAGGGAGAAAAGGAGTGA

Function

NR:

description
E3 ubiquitin-protein ligase ZSWIM2-like isoform X1

GO: NA

KEGG:

id description
K15716 ZSWIM2; E3 ubiquitin-protein ligase ZSWIM2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608408.2 True 2088 mRNA 0.54 10 12038742 12045602

Neighbor

gene id symbol gene type direction distance location
LOC110527250 LOC106575686 coding upstream 17400 12007954 ~ 12021342 (+)
LOC110497058 LOC106575722 coding upstream 112533 11885873 ~ 11926209 (+)
LOC118941095 LOC106575791 coding upstream 224510 11809043 ~ 11814232 (+)
trnas-cga-32 NA coding upstream 229752 11808909 ~ 11808990 (+)
LOC110495630 LOC106575789 coding upstream 230362 11803177 ~ 11808380 (+)
dytn LOC106574817 coding downstream 3377 12048979 ~ 12060014 (+)
LOC110538823 LOC105019738 coding downstream 23447 12069049 ~ 12080939 (+)
LOC110527243 LOC102778049 coding downstream 48300 12093902 ~ 12161272 (+)
LOC110528736 LOC100693318 coding downstream 139107 12184709 ~ 12214234 (+)
LOC118941035 LOC106592175 coding downstream 168948 12214550 ~ 12216720 (+)
G1517176 NA non-coding upstream 41083 11996301 ~ 11997659 (+)
G1517174 NA non-coding upstream 43799 11993702 ~ 11994943 (+)
G1517150 NA non-coding upstream 96845 11940062 ~ 11941897 (+)
G1517101 NA non-coding upstream 176697 11861372 ~ 11862045 (+)
G1517060 NA non-coding upstream 197396 11838527 ~ 11841346 (+)
G1517110 ef1b non-coding downstream 21782 12067384 ~ 12068234 (+)
G1517202 NA non-coding downstream 40288 12085890 ~ 12086420 (+)
G1517204 NA non-coding downstream 43068 12088670 ~ 12088910 (+)
G1517206 NA non-coding downstream 43785 12089387 ~ 12089608 (+)
G1517019 NA other upstream 394984 11642789 ~ 11643758 (+)
G1517015 NA other upstream 403763 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 946188 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1021653 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 788049 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 889052 12934654 ~ 12936278 (+)
G1517457 NA other downstream 891921 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1141499 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2389160 14434762 ~ 14436120 (+)

Expression


Co-expression Network