LOC110538823 (LOC105019738)


Basic Information

Item Value
gene id LOC110538823
gene name LOC105019738
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12069049 ~ 12080939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951870.1
CATTTCAACCGGATGTACTAACGTTTTACGGGGTGAAAGGGCATATTATAACTCGACAACGTTAAATATCTTTATGGTTATAATAGTTTTGAACATATGCATATGTTTTATTATTATGTAAATACATGTAACTTAATTTTAAATTAAGAAGTATGGGCAAAATTAGCTATTTCTTCCTTTAATATGTCGTGGTGAATCGTTCATTTTCGTTGTTGTGACCGAGATTCGCAGTAGGATTGCTAGCTAGTACATACATAAATCGCTGTTCTGGTCAAGAAGGCCAAATAGCGACAAGCGTCATGTTGCGTTTGCCATCCGTTAGCCGCGCGCTAGCAGGGGCAGCCAAGGGCAGCCTGGCCCCCTCCAACAATGTGCGTACCTCAGCGAGAGCTGCCAGTAACATGGTAGAGGTGTTTGTTGATGGGAAACCAGTGGAGGTGCTGCCTGGAACCACTGTGCTGCAGgcctGTGAGAAGATGGGGGTGCAGATTCCTCGGTTCTGCTACCACGAGCGCCTGTCCGTGGCTGGGAACTGCAGAATGTGTCTGGTGGAGATTGAGAAAGCCCCAAAGCTGGCGGCCGCGTGCGCCATGCCAGTGATGAAAGGCTGGAACATCCTGACCAACTCAGAGAAGACCCGCAAGGccagagagggagtgatggagttcCTGCTGGCTAACCACCCTCTGGACTGCCCCATCTGTGACCAGGGAGGAGAGTGTGACCTTCAGGACCAGTCCATGCAGTTTGGTTCAGACCGCAGTCGTTTCTCTGAGGACAAGCGGGCTGTGGAGGATAAGAACATTGGACCACTCATCAAAACAATCATGACCCGCTGCATCCAGTGCACACGCTGCATCCGTTTTGCCAGTGAGATTGCAGGTGTAGAGGACCTGGGTACCACAGGCAGAGGGAACAACATGCAGGTGGGAACGTACGTGGAGAAGATGTTCATGTCCGAGATGTCAGGAAACGTCATCGACATCTGTCCCGTAGGAGCCCTCACTTCCAAACCATACGCCTTCACCTCACGACCCTGGGAGACCAGGAAGACAGAGTCTATAGATGTGTTGGATGCAGTAGGCAGTAACATCATTGTGAGTACACGTGGTGGAGAGGTGATGAGGGTTCTGCCCCGCCTGAACGAAGACATCAACGAGGAGTGGATCTCAGACAAGACCAGGTTTGCGTATGACGGTCTGAAGCGCCAGAGGCTGACCCAGCCTATGGTGAAGGACGCGTCAGGACAACTGGTCCCCACATCCTGGGAAGACGTACTCACACGCGTGGCTGGAGCAttgcAGGGAGCCCAGGGCAGTGACGTAGCAGCCATAGCTGGAGGCATGGTGGATGCAGAGGCTCTGGTGTCTCTGAAGGACCTGCTCAACAGACTGAACAGTGACAACCTCTGTACCGAGGAGGTCTTCCCTGATGCTGGGGCTGGCTCTGACCTGCGTTCCAACTACCTGCTGAACTCTGGGATCAGTGGCATTGAGGAAGCTGACCTGCTGTTACTTATAGGAACCAACCCTCGTTACGAGGCCCCACTCTTCAATGCACGCGTCCgcaagagcTGGTTGCATAATGAGTTGAAGGTGTCTGTGGTGGGGAGCAGTGTGGATCTGAGTTACACTTACGACCACCTGGGAGAGTCCACTCAGGTGCTGCAGGACATCGCTAACGGAACACACCCCTTCTGCCAGGTGCTCGCGCAGGCCAAGCAGCCGGTAGTGGTGGTGGGCAGTGCCTCTCTTCAGAGGGATGATGGAGGAGCCATCTTGAGCTCTGTGCAAACCATCGCCCAGAATGCCCGGGCCAGCAGCGGAGTGGAGGAGGGCTGGAAGGTCCTCAACGTGCTGCACAGGGTAGCCAGTCAGGTGGCAGCCCTGGATCTGGGCTACAAGGCGGGGGTGGAGTCTATCCGTAAAGCCCCGCCCAAGGTTCTGTTCCTGCTAGGAGCTGACAGAGAATGCATCACCAGACAGGACCTGCCTAAAGACTGCATGATCATTTACCAGGGTCACCATGGAGATGTGGGTGCCACCATGGCTGATGTCATCCTGCCCGGCGCGGCGTACACTGAGAAGAATGGAACATATGTCAACACAGAGGGGAGGAGTCAACAGACACGCGTGGCCGTCACTGCGCCCGGCATGGCCAGGGAGGACTGGAAGATCATCAGAGCCATCtccgagCTGGCGGGGCTGACTCTGCCCTATGACTCTGTGGATGAGGTGAGGGGTCGGCTGGCCGAGGTTTCTCCTAACCTGGTCCGCTACGACGACGTTGAGGAAGCCAACTACTTTAAACAGGCCAACCAACTCTCACAGgctGTGAATCAGACTCTTCTAGCAGATCCTCTGGTCTCTCCTCAGCTGACCGCTAAAGACTTCTATATGACAGATCCCATTAGCAGAGCGTCTCAGACCATGGCCAAGTGTGTGAAGGCCGTCACAGAGGGAGCTGACGCCGTCGATGAACCATCCATCTGCTGAACTCATACACACTCAGAcagccaaaacacacacacacagtgatgttgCTCTCCTTTATTTAAGTTGTTTTTTGCTGATTGCTGTAAAGATGTTCGAGGGAAGAGGCTTTGTTAAAGAAAGCTGAAAATGAAACTGTACTCTGATTATGAATAAAATCCTATCCTGTA
>XM_036951872.1
ATTTCAACCGGATGTACTAACGTTTTACGGGGTGAAAGGGCATATTATAACTCGACAACGTTAAATATCTTTATGGTTATAATAGTTTTGAACATATGCATATGTTTTATTATTATGTAAATACATGTAACTTAATTTTAAATTAAGAAGTATGGGCAAAATTAGCTATTTCTTCCTTTAATATGTCGTGGTGAATCGTTCATTTTCGTTGTTGTGACCGAGATTCGCAGTAGGATTGCTAGCTAGTACATACATAAATCGCTGTTCTGGTCAAGAAGGCCAAATAGCGACAAGCGTCATGTTGCGTTTGCCATCCGTTAGCCGCGCGCTAGCAGGGGCAGCCAAGGGCAGCCTGGCCCCCTCCAACAATGCGAGAGCTGCCAGTAACATGGTAGAGGTGTTTGTTGATGGGAAACCAGTGGAGGTGCTGCCTGGAACCACTGTGCTGCAGgcctGTGAGAAGATGGGGGTGCAGATTCCTCGGTTCTGCTACCACGAGCGCCTGTCCGTGGCTGGGAACTGCAGAATGTGTCTGGTGGAGATTGAGAAAGCCCCAAAGCTGGCGGCCGCGTGCGCCATGCCAGTGATGAAAGGCTGGAACATCCTGACCAACTCAGAGAAGACCCGCAAGGccagagagggagtgatggagttcCTGCTGGCTAACCACCCTCTGGACTGCCCCATCTGTGACCAGGGAGGAGAGTGTGACCTTCAGGACCAGTCCATGCAGTTTGGTTCAGACCGCAGTCGTTTCTCTGAGGACAAGCGGGCTGTGGAGGATAAGAACATTGGACCACTCATCAAAACAATCATGACCCGCTGCATCCAGTGCACACGCTGCATCCGTTTTGCCAGTGAGATTGCAGGTGTAGAGGACCTGGGTACCACAGGCAGAGGGAACAACATGCAGGTGGGAACGTACGTGGAGAAGATGTTCATGTCCGAGATGTCAGGAAACGTCATCGACATCTGTCCCGTAGGAGCCCTCACTTCCAAACCATACGCCTTCACCTCACGACCCTGGGAGACCAGGAAGACAGAGTCTATAGATGTGTTGGATGCAGTAGGCAGTAACATCATTGTGAGTACACGTGGTGGAGAGGTGATGAGGGTTCTGCCCCGCCTGAACGAAGACATCAACGAGGAGTGGATCTCAGACAAGACCAGGTTTGCGTATGACGGTCTGAAGCGCCAGAGGCTGACCCAGCCTATGGTGAAGGACGCGTCAGGACAACTGGTCCCCACATCCTGGGAAGACGTACTCACACGCGTGGCTGGAGCAttgcAGGGAGCCCAGGGCAGTGACGTAGCAGCCATAGCTGGAGGCATGGTGGATGCAGAGGCTCTGGTGTCTCTGAAGGACCTGCTCAACAGACTGAACAGTGACAACCTCTGTACCGAGGAGGTCTTCCCTGATGCTGGGGCTGGCTCTGACCTGCGTTCCAACTACCTGCTGAACTCTGGGATCAGTGGCATTGAGGAAGCTGACCTGCTGTTACTTATAGGAACCAACCCTCGTTACGAGGCCCCACTCTTCAATGCACGCGTCCgcaagagcTGGTTGCATAATGAGTTGAAGGTGTCTGTGGTGGGGAGCAGTGTGGATCTGAGTTACACTTACGACCACCTGGGAGAGTCCACTCAGGTGCTGCAGGACATCGCTAACGGAACACACCCCTTCTGCCAGGTGCTCGCGCAGGCCAAGCAGCCGGTAGTGGTGGTGGGCAGTGCCTCTCTTCAGAGGGATGATGGAGGAGCCATCTTGAGCTCTGTGCAAACCATCGCCCAGAATGCCCGGGCCAGCAGCGGAGTGGAGGAGGGCTGGAAGGTCCTCAACGTGCTGCACAGGGTAGCCAGTCAGGTGGCAGCCCTGGATCTGGGCTACAAGGCGGGGGTGGAGTCTATCCGTAAAGCCCCGCCCAAGGTTCTGTTCCTGCTAGGAGCTGACAGAGAATGCATCACCAGACAGGACCTGCCTAAAGACTGCATGATCATTTACCAGGGTCACCATGGAGATGTGGGTGCCACCATGGCTGATGTCATCCTGCCCGGCGCGGCGTACACTGAGAAGAATGGAACATATGTCAACACAGAGGGGAGGAGTCAACAGACACGCGTGGCCGTCACTGCGCCCGGCATGGCCAGGGAGGACTGGAAGATCATCAGAGCCATCtccgagCTGGCGGGGCTGACTCTGCCCTATGACTCTGTGGATGAGGTGAGGGGTCGGCTGGCCGAGGTTTCTCCTAACCTGGTCCGCTACGACGACGTTGAGGAAGCCAACTACTTTAAACAGGCCAACCAACTCTCACAGgctGTGAATCAGACTCTTCTAGCAGATCCTCTGGTCTCTCCTCAGCTGACCGCTAAAGACTTCTATATGACAGATCCCATTAGCAGAGCGTCTCAGACCATGGCCAAGTGTGTGAAGGCCGTCACAGAGGGAGCTGACGCCGTCGATGAACCATCCATCTGCTGAACTCATACACACTCAGAcagccaaaacacacacacacagtgatgttgCTCTCCTTTATTTAAGTTGTTTTTTGCTGATTGCTGTAAAGATGTTCGAGGGAAGAGGCTTTGTTAAAGAAAGCTGAAAATGAAACTGTACTCTGATTATGAATAAAATCCTATCCTGTA
>XM_036951871.1
ATAGGGGAGACCGTTAGATCGTCATGTTGCGTTTGCCATCCGTTAGCCGCGCGCTAGCAGGGGCAGCCAAGGGCAGCCTGGCCCCCTCCAACAATGTGCGTACCTCAGCGAGAGCTGCCAGTAACATGGTAGAGGTGTTTGTTGATGGGAAACCAGTGGAGGTGCTGCCTGGAACCACTGTGCTGCAGgcctGTGAGAAGATGGGGGTGCAGATTCCTCGGTTCTGCTACCACGAGCGCCTGTCCGTGGCTGGGAACTGCAGAATGTGTCTGGTGGAGATTGAGAAAGCCCCAAAGCTGGCGGCCGCGTGCGCCATGCCAGTGATGAAAGGCTGGAACATCCTGACCAACTCAGAGAAGACCCGCAAGGccagagagggagtgatggagttcCTGCTGGCTAACCACCCTCTGGACTGCCCCATCTGTGACCAGGGAGGAGAGTGTGACCTTCAGGACCAGTCCATGCAGTTTGGTTCAGACCGCAGTCGTTTCTCTGAGGACAAGCGGGCTGTGGAGGATAAGAACATTGGACCACTCATCAAAACAATCATGACCCGCTGCATCCAGTGCACACGCTGCATCCGTTTTGCCAGTGAGATTGCAGGTGTAGAGGACCTGGGTACCACAGGCAGAGGGAACAACATGCAGGTGGGAACGTACGTGGAGAAGATGTTCATGTCCGAGATGTCAGGAAACGTCATCGACATCTGTCCCGTAGGAGCCCTCACTTCCAAACCATACGCCTTCACCTCACGACCCTGGGAGACCAGGAAGACAGAGTCTATAGATGTGTTGGATGCAGTAGGCAGTAACATCATTGTGAGTACACGTGGTGGAGAGGTGATGAGGGTTCTGCCCCGCCTGAACGAAGACATCAACGAGGAGTGGATCTCAGACAAGACCAGGTTTGCGTATGACGGTCTGAAGCGCCAGAGGCTGACCCAGCCTATGGTGAAGGACGCGTCAGGACAACTGGTCCCCACATCCTGGGAAGACGTACTCACACGCGTGGCTGGAGCAttgcAGGGAGCCCAGGGCAGTGACGTAGCAGCCATAGCTGGAGGCATGGTGGATGCAGAGGCTCTGGTGTCTCTGAAGGACCTGCTCAACAGACTGAACAGTGACAACCTCTGTACCGAGGAGGTCTTCCCTGATGCTGGGGCTGGCTCTGACCTGCGTTCCAACTACCTGCTGAACTCTGGGATCAGTGGCATTGAGGAAGCTGACCTGCTGTTACTTATAGGAACCAACCCTCGTTACGAGGCCCCACTCTTCAATGCACGCGTCCgcaagagcTGGTTGCATAATGAGTTGAAGGTGTCTGTGGTGGGGAGCAGTGTGGATCTGAGTTACACTTACGACCACCTGGGAGAGTCCACTCAGGTGCTGCAGGACATCGCTAACGGAACACACCCCTTCTGCCAGGTGCTCGCGCAGGCCAAGCAGCCGGTAGTGGTGGTGGGCAGTGCCTCTCTTCAGAGGGATGATGGAGGAGCCATCTTGAGCTCTGTGCAAACCATCGCCCAGAATGCCCGGGCCAGCAGCGGAGTGGAGGAGGGCTGGAAGGTCCTCAACGTGCTGCACAGGGTAGCCAGTCAGGTGGCAGCCCTGGATCTGGGCTACAAGGCGGGGGTGGAGTCTATCCGTAAAGCCCCGCCCAAGGTTCTGTTCCTGCTAGGAGCTGACAGAGAATGCATCACCAGACAGGACCTGCCTAAAGACTGCATGATCATTTACCAGGGTCACCATGGAGATGTGGGTGCCACCATGGCTGATGTCATCCTGCCCGGCGCGGCGTACACTGAGAAGAATGGAACATATGTCAACACAGAGGGGAGGAGTCAACAGACACGCGTGGCCGTCACTGCGCCCGGCATGGCCAGGGAGGACTGGAAGATCATCAGAGCCATCtccgagCTGGCGGGGCTGACTCTGCCCTATGACTCTGTGGATGAGGTGAGGGGTCGGCTGGCCGAGGTTTCTCCTAACCTGGTCCGCTACGACGACGTTGAGGAAGCCAACTACTTTAAACAGGCCAACCAACTCTCACAGgctGTGAATCAGACTCTTCTAGCAGATCCTCTGGTCTCTCCTCAGCTGACCGCTAAAGACTTCTATATGACAGATCCCATTAGCAGAGCGTCTCAGACCATGGCCAAGTGTGTGAAGGCCGTCACAGAGGGAGCTGACGCCGTCGATGAACCATCCATCTGCTGAACTCATACACACTCAGAcagccaaaacacacacacacagtgatgttgCTCTCCTTTATTTAAGTTGTTTTTTGCTGATTGCTGTAAAGATGTTCGAGGGAAGAGGCTTTGTTAAAGAAAGCTGAAAATGAAACTGTACTCTGATTATGAATAAAATCCTATCCTGTA

Function

NR:

description
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like isoform X1

GO: NA

KEGG:

id description
K03934 NDUFS1; NADH dehydrogenase (ubiquinone) Fe-S protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951870.1 False 2662 mRNA 0.53 17 12069049 12080939
XM_036951872.1 False 2649 mRNA 0.53 17 12069050 12080939
XM_036951871.1 True 2386 mRNA 0.55 17 12069572 12080939

Neighbor

gene id symbol gene type direction distance location
dytn LOC106574817 coding upstream 9035 12048979 ~ 12060014 (+)
zswim2 LOC106574814 coding upstream 23447 12038742 ~ 12045602 (+)
LOC110527250 LOC106575686 coding upstream 47707 12007954 ~ 12021342 (+)
LOC110497058 LOC106575722 coding upstream 142840 11885873 ~ 11926209 (+)
LOC118941095 LOC106575791 coding upstream 254817 11809043 ~ 11814232 (+)
LOC110527243 LOC102778049 coding downstream 12963 12093902 ~ 12161272 (+)
LOC110528736 LOC100693318 coding downstream 103770 12184709 ~ 12214234 (+)
LOC118941035 LOC106592175 coding downstream 133611 12214550 ~ 12216720 (+)
LOC110527236 LOC106575759 coding downstream 135775 12216714 ~ 12220754 (+)
LOC110527239 iqcb1 coding downstream 144446 12225385 ~ 12229990 (+)
G1517110 ef1b non-coding upstream 815 12067384 ~ 12068234 (+)
G1517176 NA non-coding upstream 71390 11996301 ~ 11997659 (+)
G1517174 NA non-coding upstream 74106 11993702 ~ 11994943 (+)
G1517150 NA non-coding upstream 127152 11940062 ~ 11941897 (+)
G1517101 NA non-coding upstream 207004 11861372 ~ 11862045 (+)
G1517202 NA non-coding downstream 4951 12085890 ~ 12086420 (+)
G1517204 NA non-coding downstream 7731 12088670 ~ 12088910 (+)
G1517206 NA non-coding downstream 8448 12089387 ~ 12089608 (+)
G1517229 NA non-coding downstream 120771 12201710 ~ 12202138 (+)
G1517019 NA other upstream 425291 11642789 ~ 11643758 (+)
G1517015 NA other upstream 434070 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 976495 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1051960 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 752712 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 853715 12934654 ~ 12936278 (+)
G1517457 NA other downstream 856584 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1106162 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2353823 14434762 ~ 14436120 (+)

Expression


Co-expression Network