LOC110527236 (LOC106575759)


Basic Information

Item Value
gene id LOC110527236
gene name LOC106575759
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12216714 ~ 12220754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951339.1
GAGGCTTTGTCTCTGGGGTTGGAGGTTCGGCTGCCCAGGGGAGCTTCAGGTCCTGTGGCCTGCACCTCAGTGCTCCCTCTGTGGAGAGGCTAGCCCTGTCTGCCCCCCTGCCCTCTGACAGCTCTGTGTCTGGAGAAAGTGGACATCCAATCTCAtcttcctgctctccctctcgtCAGGGACCACCAGTACTCTTCTCTGAAATTCATCCTCACCCCCAACCTCACCCCCTTGCCAACACTCAACCACAGTCTGCCCCAGATGCTACATCCCTGGACAGGGGGGGCCAGCTGGTTTCTACCCAGGATGGAGGGACCTTAGCCAGGGAGGCTTGCGACCACATGGAGGGtaacgctggagaggaggaagaggagtgtcCAGTGAGAGACACCAGCGCCCAGACCTGCtttaacatacaaacacacacccagctggcatacacacacccacacacacacatagatccAGTGCCTGTACAGGCATACTtacaaaacacacatccaggtGTGGCTCCCAAccacacacactcgtacacacGCCTGCCGCTGGCGCTGGGCTCTAAGGGCTGTAGTCCAGAGGGAACCGCTCGGAAGGTGATGACTGTTCAGTACCTCCTTGGAGAGTTGAAGGCTCTGCTCGCTGGCCAagaCAGTGTAGCAGAGCGTCTGGTGTGTGAGCTGGAGCAGACAGTGTCTCTACTTCCTGTCATGGTGGGCAGCTCTAACATCCAGGCTGAGATTGCTCTGGTCCTGCAACCTCTACGCAGTGAGAACGCACTGCTACGCAGGCGTCTGAGGATAGTGAACCAACAGTtgcgggagagagagcgagcagagaggGAGGCCAGAGATGTCCACTGTGACACTGACATGTCGGCTCTGCAGTCGGAGCTCAACGATGCTCACACAAGCCTGCAAGAGCTGCAGCGCGGCAACACTGAGCTACGGCAAGCCCTGGTGGACACACAGAGCCAGCTGCAGCAGAGTGAGGCGGAGTGCAGTCGTATCAGTAAAGacgTGCAGTCTGCTCTGGGTGAGGTGCAGGGCTGTAACCACAGGCTGCAGGAGTGTCAGAAGGAGAATGCTGCACTGGCACTCAATAcccagaagaggaagacagagatccACACACTACAGGAGcacctcagagctctacaggTCCCTGTCACTGAGTTTCCTGCTGTGACTGACATCCCTACGTCCCGCCTCCCTCTCACTAAACGAGCTCTGGACCAATACCAGGACCAGCAGGGTCCGTCAGACCACCCAGTCAGCCAATACCTGTGGTCGTTGGAGCAGAAGGGGTGTGGTTCTGTCTCCCTGCCCTGTAAAGGCCCTGAGTGCCACTACACACACCAGCAGGACTTCAGTGTGTGTACACCAggtggtcagagtgtgtgtgcgtctgcggATCAGGAAGTGGGTCTGTGTGTGGCTCTGGAAAGAAAAGCCACCCCACCTTTGGCCTTCGCCCCACTGAGAGAGACTGTGAGGTCACCACTTCCTGTTGAGGGGTTaCCACTTACTGTGATGATgtcacagagaggaggaggaccacAGGGTCTTCAGAGCCTTAGTGTTGCCCTCGAGGGTTTCCCTCAATTAAAAAGCCTATTATCTAATCTCCACCAATCAAACGGACTCTGCTCTAATGGCGCTGGACACTCTGACCTGTCCCAGAGTCACCGGCGCCGTCTGGACATGGATATGGCATCACCGGGCAAGGGGCGGAACTCTTCGCTTGACTCCACTGGCCTCTCCTTATGTGAGGTCAGATCCTTGGCTTCTGATTGGAGTGCAGGGTCAAGCTCGACCTTTGACACGCGTGACGAACAGGAGTTCCGGAACGGGCTGGCCGCTCTGGATGCCAGCATTGCCAGCTTGCAGAGAACTATAAAGCAGGACCTCAAGCGataagacagagacacacacacacacaccgaggtaGTCTGAATCTATTCCAATGTAATAAAATAACCAATGTCTTTTTTTAGGTTTCTTTTTAATTGTACTTTATTTGAATGAAATGGCAAATTAAATAGTTATTCTTTTTTCGTTACTATTTATTCTTTACTTTAAAGACGGGTTACCTGAGAACTTCAGGAAAACGAAGCAcacgcttcaatggggcagaaggccatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCCATGTGTTGTGATTCTAGATGGCCAGACAGCAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACGATGCcatgtgttgtgattctggatggccagacagcAACAATGACACgatgccatgtggggaatcgtaagcGGCTCATTTCAGCTAGTTCTATTTGTTTTTATATCATGTTTTGACtgagctagctaaccaacaactgtaatggtggatttgagagacaagtgctcattgtacaacttcatttatgttttcaataaacattggagaagAAATATA

Function

NR:

description
coiled-coil domain-containing protein 14-like

GO: NA

KEGG:

id description
K16541 CCDC14; coiled-coil domain-containing protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951339.1 True 2911 mRNA 0.52 7 12216714 12220754

Neighbor

gene id symbol gene type direction distance location
LOC110528736 LOC100693318 coding upstream 2480 12184709 ~ 12214234 (+)
LOC110527243 LOC102778049 coding upstream 55442 12093902 ~ 12161272 (+)
LOC110538823 LOC105019738 coding upstream 135775 12069049 ~ 12080939 (+)
dytn LOC106574817 coding upstream 156700 12048979 ~ 12060014 (+)
zswim2 LOC106574814 coding upstream 171112 12038742 ~ 12045602 (+)
LOC110527239 iqcb1 coding downstream 4631 12225385 ~ 12229990 (+)
LOC118941030 LOC106574872 coding downstream 31263 12252017 ~ 12260675 (+)
LOC110511883 eed coding downstream 54509 12275263 ~ 12281375 (+)
LOC110495539 LOC106575646 coding downstream 66727 12287481 ~ 12308672 (+)
LOC118941037 NA coding downstream 88201 12308955 ~ 12317593 (+)
G1517233 NA non-coding upstream 11300 12204138 ~ 12205414 (+)
G1517231 NA non-coding upstream 13741 12202671 ~ 12202973 (+)
G1517230 NA non-coding upstream 14137 12202291 ~ 12202577 (+)
G1517229 NA non-coding upstream 14576 12201710 ~ 12202138 (+)
G1517116 NA non-coding downstream 25129 12245883 ~ 12246387 (+)
G1517254 NA non-coding downstream 51415 12272169 ~ 12272799 (+)
G1517256 NA non-coding downstream 64542 12285296 ~ 12285618 (+)
G1517274 NA non-coding downstream 125692 12346446 ~ 12348016 (+)
G1517276 NA non-coding downstream 133342 12354096 ~ 12356750 (+)
G1517150 NA other upstream 275609 11940062 ~ 11941897 (+)
G1517019 NA other upstream 572956 11642789 ~ 11643758 (+)
G1517015 NA other upstream 581735 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1124160 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1199625 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 612897 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 713900 12934654 ~ 12936278 (+)
G1517457 NA other downstream 716769 12937523 ~ 12942494 (+)
G1517545 NA other downstream 966347 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2214008 14434762 ~ 14436120 (+)

Expression


Co-expression Network