LOC110527239 (iqcb1)


Basic Information

Item Value
gene id LOC110527239
gene name iqcb1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12225385 ~ 12229990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951333.1
CGCAGATTAGTGACGTAAGTAGTGTTGCTGTAGAAACAAATGAAGCTTCCCCGTCAGTGCTTGTGGCAACAAGAGAGCACGAAAATAGATTTCAACTTGATCGTGTCTGGTTTCATTCGAAGAATAATGTAGCTCGTCAATTTTGTATATGGTTTTATACTTCAGATCTGGGAGCGAAAGATTACTGTAATAAACTCGCGATGAGTCTCGCTAGAAAGGACACAGACGCCGGGCTAAGGGCACTGGTCGCGAGCACAAACATTAAGCCGGAGCAGAAGGTTCCACAAGTTCTCTCAAAATTACAAGAAATTCTGAATAGGAAATCTGTCCAAGACGATAGAGAGTTGGGTGCGTTCAAAAACTCCTTGTTCAGCCATGGCATACTTCAATACTGCGCAGGAGACGCCCTCAAACTGAACTATGCCAAAGTTGAAGGAGGCTACGCAACTGCCACTCAGTTGGCAGAAATTCTCAGCTCCTGCTGTGTGGGTGTGGACATGGGCGGAGACACTGAGGCCTTCCATAGGCGGCTGCTCCCATCCGTCACAGACAGCCTGTTGTCATTGGCCAGTCGGCTGATGAACAGAGCTTTGGCGgggAATGGGCAGCCTGAGATGTTTCGTTTCTTCAAGAAAGTGATGGGCTCTGTGTGTTGGCTTCTGAAAGCCCATGGTCACCTGGCCACACAAGtCCTGCAGTCAGACCACTATGAGAGGATGTTAatgagtgaggaagagagagtgggaaccgtgtgtgtgtcactgtggcATCAGCTTCTGACAGCTAACAGTGAGTTAGTAGCAGGTTTGGGAAAAGGCCCCTTGTCTGTGATTCTGGATGACGTCGTGTACCGAATGGCTCACACATCCAACCCTGTTGTGGGAGGGGCAGCAATTAGGACGCTCCTCCTGGTTGCCCGGCAACAAGAATCCGCCCTGCAGCTTATCATCCATAGGTTCAAAGGGTTGGAGGGCATGATTGGTCGAGAATGGAGGGGGCGGGGCTTCGATGAGGAAGTGGACCAACTGATAAAGCTGCTGCACAGAGAAGTCCCCAAACCAGCTGATCACACAGAGACGTGGCCAGAGGAGTGTGTGAGAGCGGCGTGTATCATCCAGGCAGCGTGGAGATCCTATCAGAccaggaggagagtgaagagtctGCCCAGAGCTGTCAGATCACTGCAGAGGagcttcagggagcgGCGGCGGAGGAGAGCGCAGCAGGCTCAGGCTGTGTGCTGGGAGAAGGAGCTGAGACTACAGCTGtgtgtcaggagacagagagccagGAGAGAGTTCCATCAGAAACAACTACAGCTACTGCAGCTATTgcccccaggtcaggTGCAGCAGTACCTCGGGGAGGTCGAGAGGCAGGCTGCAATACAGATCCAGAGGGTTTGGCGAGGCCACCGAGAGCGACGAAACTTCCAGCaacggagaaacacacacacacagcacagagctgCTGTTGTGCTGCAGAGAGcaGTCCTTCGCTTTCTGAAGAGGCGGAGAGCTGAGAAAgcccctccttccttctcccctTGGATTGGTCCTCGGGGTTTGACTGACAGTCGGAGGGCGGAGctgaagagagaggtggaggaacatattgccctGCACCCGtCCTCTGTGGTGTCGCTAGAGGGCAGTAGGGAGCTCCATGCTCAGACCCAAGCCTTGCTGCTCCAGCATCTacaggggagagaggcagagctgagagaacacactcacacacacgcccTGCTGGCACAGATCAACACCGACCTGGAACTACTGCTGAATGCCCCCTCACTCAGTGTCGCCACAGTAACCGACTGTGACGTGTTCAGGAGTCGCTCTGCCCCCGTAGCTGCCCGCGCCCGGCAATCCCACAATGCCTTGCTCCAGTCCGGTCGCCTGCCTTGGTGGAAGATGCTGGGAGATGGTGACATCACCTGTCCAGAATCAGAATCCGCCCACAAAGACCACCGGCTGGAGGCAGAGTTTAACTGTCTGTATTTAGGAGGAAGCTGACGACGTTGTTCCACAACAGTATTGTAACTCTGTTCTAACATTGTCATAGGGCTgttgtaataatgtcattatgaCGTCAAACCTGCTCTGGAATTCAACCAATCATGGGTTTCAGTCTGGACCGtggttagttgaatcaggtgtgttactgcAGTGGTCTTTTCATCGGTCTCTGTGTGGCTGGCCCCTTCAGGAAGAGTTTCAGTCTAAGGAATTGGAAAGCAATTTTGTGTACAGAAGTCTGCATTAAAGTTTGTACTTTTCTACTATTA
>XM_036951334.1
CGCAGATTAGTGACGTAAGTAGTGTTGCTGTAGAAACAAATGAAGCTTCCCCGTCAGTGCTTGTGGCAACAAGAGAGCACGAAAATAGATTTCAACTTGATCGTGTCTGGTTTCATTCGAAGAATAATGTAGCTCGTCAATTTTGTATATGGTTTTATACTTCAGATCTGGGAGCGAAAGATTACTGTAATAAACTCGCGATGAGTCTCGCTAGAAAGGACACAGACGCCGGGCTAAGGGCACTGGTCGCGAGCACAAACATTAAGCCGGAGCAGAAGGTTCCACAAGTTCTCTCAAAATTACAAGAAATTCTGAATAGGAAATCTGTCCAAGACGATAGAGAGTTGGGTGCGTTCAAAAACTCCTTGTTCAGCCATGGCATACTTCAATACTGCGCAGGAGACGCCCTCAAACTGAACTATGCCAAAGTTGAAGGAGGCTACGCAACTGCCACTCAGTTGGCAGAAATTCTCAGCTCCTGCTGTGTGGGTGTGGACATGGGCGGAGACACTGAGGCCTTCCATAGGCGGCTGCTCCCATCCGTCACAGACAGCCTGTTGTCATTGGCCAGTCGGCTGATGAACAGAGCTTTGGCGgggAATGGGCAGCCTGAGATGTTTCGTTTCTTCAAGAAAGTGATGGGCTCTGTGTGTTGGCTTCTGAAAGCCCATGGTCACCTGGCCACACAAGtCCTGCAGTCAGACCACTATGAGAGGATGTTAatgagtgaggaagagagagtgggaaccgtgtgtgtgtcactgtggcATCAGCTTCTGACAGCTAACAGTGAGTTAGTAGCAGGTTTGGGAAAAGGCCCCTTGTCTGTGATTCTGGATGACGTCGTGTACCGAATGGCTCACACATCCAACCCTGTTGTGGGAGGGGCAGCAATTAGGACGCTCCTCCTGGTTGCCCGGCAACAAGAATCCGCCCTGCAGCTTATCATCCATAGGTTCAAAGGGTTGGAGGGCATGATTGGTCGAGAATGGAGGGGGCGGGGCTTCGATGAGGAAGTGGACCAACTGATAAAGCTGCTGCACAGAGAAGTCCCCAAACCAGCTGATCACACAGAGACGTGGCCAGAGGAGTGTGTGAGAGCGGCGTGTATCATCCAGGCAGCGTGGAGATCCTATCAGAccaggaggagagtgaagagtctGCCCAGAGCTGTCAGATCACTGCAGAGGagcttcagggagcgGCGGCGGAGGAGAGCGCAGCAGGCTCAGGCTGTGTGCTGGGAGAAGGAGCTGAGACTACAGCTGtgtgtcaggagacagagagccagGAGAGAGTTCCATCAGAAACAACTACAGCTACTGCAGCTATTgcccccaggtcaggTGCAGCAGTACCTCGGGGAGGTCGAGAGGCAGGCTGCAATACAGATCCAGAGGGTTTGGCGAGGCCACCGAGAGCGACGAAACTTCCAGCaacggagaaacacacacacacagcacagagctgCTGTTGTCCTGCAGAGAGcaGTCCTTCGCTTTCTGAAGAGGCGGAGAGCTGAGAAAgcccctccttccttctcccctTGGATTGGTCCTCGGGGTTTGACTGACAGTCGGAGGGCGGAGctgaagagagagtCCTCTGTGGTGTCGCTAGAGGGCAGTAGGGAGCTCCATGCTCAGACCCAAGCCTTGCTGCTCCAGCATCTacaggggagagaggcagagctgagagaacacactcacacacacgcccTGCTGGCACAGATCAACACCGACCTGGAACTACTGCTGAATGCCCCCTCACTCAGTGTCGCCACAGTAACCGACTGTGACGTGTTCAGGAGTCGCTCTGCCCCCGTAGCTGCCCGCGCCCGGCAATCCCACAATGCCTTGCTCCAGTCCGGTCGCCTGCCTTGGTGGAAGATGCTGGGAGATGGTGACATCACCTGTCCAGAATCAGAATCCGCCCACAAAGACCACCGGCTGGAGGCAGAGTTTAACTGTCTGTATTTAGGAGGAAGCTGACGACGTTGTTCCACAACAGTATTGTAACTCTGTTCTAACATTGTCATAGGGCTgttgtaataatgtcattatgaCGTCAAACCTGCTCTGGAATTCAACCAATCATGGGTTTCAGTCTGGACCGtggttagttgaatcaggtgtgttactgcAGTGGTCTTTTCATCGGTCTCTGTGTGGCTGGCCCCTTCAGGAAGAGTTTCAGTCTAAGGAATTGGAAAGCAATTTTGTGTACAGAAGTCTGCATTAAAGTTTGTACTTTTCTACTATTA
>XM_036951332.1
GCAGATTAGTGACGTAAGTAGTGTTGCTGTAGAAACAAATGAAGCTTCCCCGTCAGTGCTTGTGGCAACAAGAGAGCACGAAAATAGATTTCAACTTGATCGTGTCTGGTTTCATTCGAAGAATAATGTAGCTCGTCAATTTTGTATATGGTTTTATACTTCAGATCTGGGAGCGAAAGATTACTGTAATAAACTCGCGATGAGTCTCGCTAGAAAGGACACAGACGCCGGGCTAAGGGCACTGGTCGCGAGCACAAACATTAAGCCGGAGCAGAAGGTTCCACAAGTTCTCTCAAAATTACAAGAAATTCTGAATAGGAAATCTGTCCAAGACGATAGAGAGTTGGGTGCGTTCAAAAACTCCTTGTTCAGCCATGGCATACTTCAATACTGCGCAGGAGACGCCCTCAAACTGAACTATGCCAAAGTTGAAGGAGGCTACGCAACTGCCACTCAGTTGGCAGAAATTCTCAGCTCCTGCTGTGTGGGTGTGGACATGGGCGGAGACACTGAGGCCTTCCATAGGCGGCTGCTCCCATCCGTCACAGACAGCCTGTTGTCATTGGCCAGTCGGCTGATGAACAGAGCTTTGGCGgggAATGGGCAGCCTGAGATGTTTCGTTTCTTCAAGAAAGTGATGGGCTCTGTGTGTTGGCTTCTGAAAGCCCATGGTCACCTGGCCACACAAGtCCTGCAGTCAGACCACTATGAGAGGATGTTAatgagtgaggaagagagagtgggaaccgtgtgtgtgtcactgtggcATCAGCTTCTGACAGCTAACAGTGAGTTAGTAGCAGGTTTGGGAAAAGGCCCCTTGTCTGTGATTCTGGATGACGTCGTGTACCGAATGGCTCACACATCCAACCCTGTTGTGGGAGGGGCAGCAATTAGGACGCTCCTCCTGGTTGCCCGGCAACAAGAATCCGCCCTGCAGCTTATCATCCATAGGTTCAAAGGGTTGGAGGGCATGATTGGTCGAGAATGGAGGGGGCGGGGCTTCGATGAGGAAGTGGACCAACTGATAAAGCTGCTGCACAGAGAAGTCCCCAAACCAGCTGATCACACAGAGACGTGGCCAGAGGAGTGTGTGAGAGCGGCGTGTATCATCCAGGCAGCGTGGAGATCCTATCAGAccaggaggagagtgaagagtctGCCCAGAGCTGTCAGATCACTGCAGAGGagcttcagggagcgGCGGCGGAGGAGAGCGCAGCAGGCTCAGGCTGTGTGCTGGGAGAAGGAGCTGAGACTACAGCTGtgtgtcaggagacagagagccagGAGAGAGTTCCATCAGAAACAACTACAGCTACTGCAGCTATTgcccccaggtcaggTGCAGCAGTACCTCGGGGAGGTCGAGAGGCAGGCTGCAATACAGATCCAGAGGGTTTGGCGAGGCCACCGAGAGCGACGAAACTTCCAGCaacggagaaacacacacacacagcacagagctgCTGTTGTCCTGCAGAGAGcaGTCCTTCGCTTTCTGAAGAGGCGGAGAGCTGAGAAAgcccctccttccttctcccctTGGATTGGTCCTCGGGGTTTGACTGACAGTCGGAGGGCGGAGctgaagagagaggtggaggaacatattgccctGCACCCGtCCTCTGTGGTGTCGCTAGAGGGCAGTAGGGAGCTCCATGCTCAGACCCAAGCCTTGCTGCTCCAGCATCTacaggggagagaggcagagctgagagaacacactcacacacacgcccTGCTGGCACAGATCAACACCGACCTGGAACTACTGCTGAATGCCCCCTCACTCAGTGTCGCCACAGTAACCGACTGTGACGTGTTCAGGAGTCGCTCTGCCCCCGTAGCTGCCCGCGCCCGGCAATCCCACAATGCCTTGCTCCAGTCCGGTCGCCTGCCTTGGTGGAAGATGCTGGGAGATGGTGACATCACCTGTCCAGAATCAGAATCCGCCCACAAAGACCACCGGCTGGAGGCAGAGTTTAACTGTCTGTATTTAGGAGGAAGCTGACGACGTTGTTCCACAACAGTATTGTAACTCTGTTCTAACATTGTCATAGGGCTgttgtaataatgtcattatgaCGTCAAACCTGCTCTGGAATTCAACCAATCATGGGTTTCAGTCTGGACCGtggttagttgaatcaggtgtgttactgcAGTGGTCTTTTCATCGGTCTCTGTGTGGCTGGCCCCTTCAGGAAGAGTTTCAGTCTAAGGAATTGGAAAGCAATTTTGTGTACAGAAGTCTGCATTAAAGTTTGTACTTTTCTACTATTA

Function

symbol description
iqcb1 Predicted to enable calmodulin binding activity. Acts upstream of or within opsin transport and pronephros development. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in Leber congenital amaurosis; Senior-Loken syndrome; nephronophthisis; and retinitis pigmentosa 3. Orthologous to human IQCB1 (IQ motif containing B1).

NR:

description
IQ calmodulin-binding motif-containing protein 1

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0036372 opsin transport biological_process

KEGG:

id description
K16774 IQCB1, NPHP5; IQ calmodulin-binding motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951333.1 False 2290 mRNA 0.52 14 12225385 12229990
XM_036951334.1 False 2263 mRNA 0.52 13 12225385 12229990
XM_036951332.1 True 2289 mRNA 0.52 13 12225386 12229990

Neighbor

gene id symbol gene type direction distance location
LOC110527236 LOC106575759 coding upstream 4631 12216714 ~ 12220754 (+)
LOC118941035 LOC106592175 coding upstream 8665 12214550 ~ 12216720 (+)
LOC110528736 LOC100693318 coding upstream 11151 12184709 ~ 12214234 (+)
LOC110527243 LOC102778049 coding upstream 64113 12093902 ~ 12161272 (+)
LOC110538823 LOC105019738 coding upstream 144446 12069049 ~ 12080939 (+)
LOC118941030 LOC106574872 coding downstream 22027 12252017 ~ 12260675 (+)
LOC110511883 eed coding downstream 45273 12275263 ~ 12281375 (+)
LOC110495539 LOC106575646 coding downstream 57491 12287481 ~ 12308672 (+)
LOC118941037 NA coding downstream 78965 12308955 ~ 12317593 (+)
LOC110495542 LOC105019723 coding downstream 88800 12318790 ~ 12330568 (+)
G1517233 NA non-coding upstream 19971 12204138 ~ 12205414 (+)
G1517231 NA non-coding upstream 22412 12202671 ~ 12202973 (+)
G1517230 NA non-coding upstream 22808 12202291 ~ 12202577 (+)
G1517229 NA non-coding upstream 23247 12201710 ~ 12202138 (+)
G1517116 NA non-coding downstream 15893 12245883 ~ 12246387 (+)
G1517254 NA non-coding downstream 42179 12272169 ~ 12272799 (+)
G1517256 NA non-coding downstream 55306 12285296 ~ 12285618 (+)
G1517274 NA non-coding downstream 116456 12346446 ~ 12348016 (+)
G1517276 NA non-coding downstream 124106 12354096 ~ 12356750 (+)
G1517150 NA other upstream 284280 11940062 ~ 11941897 (+)
G1517019 NA other upstream 581627 11642789 ~ 11643758 (+)
G1517015 NA other upstream 590406 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1132831 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1208296 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 603661 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 704664 12934654 ~ 12936278 (+)
G1517457 NA other downstream 707533 12937523 ~ 12942494 (+)
G1517545 NA other downstream 957111 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2204772 14434762 ~ 14436120 (+)

Expression


Co-expression Network