LOC118941038 (LOC106574879)


Basic Information

Item Value
gene id LOC118941038
gene name LOC106574879
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12343695 ~ 12344858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951378.1
CTAACAGAGCCCCAGTCACAGACGCTGCGCCCTAGGACTGGGACAGAGCTGTTACAGCTAGAGCTGCTCTGGTCCCCCCAGAGACCTCCAGAGCAACAGAGACAAACTTCTTATCTAGAACCAAAGCCTGGACCAAGCACACAGTGTGACCCAGAGACAGATCTTCACATAGAGCAAGAACAGGAAGTGACATCTTCAATGGAGAGGACACTACAGGAGACAAAGCTGGAGACTGGGGTGTCCACTGGTCAACCTGTAAAAGGGGCAGGACCTAACACATTCACCAAGCCAAGAGAGAACCATGAGGAACCTGAGGAAgagtgtgaggaggaggaagaggggtcaAATGGAGGTGGGCGCCAGAGTGGTGGGCGGCAGTCCCCTGACGAGAAGCCTGGCACTAAAAATGCTTCAAAGCACAGCACCGTATCCTACAGGAAGATACGAAAAGGGAACACCAAACAGAGGATTGATGAGTTTGAGTCCATGGTAAACACATAACCCTGATGTCACGTGCGCGTTTAGGAACTTTTTGCCCTGACATTGTGTCATAATAAATCTTTGTATATTAAAA

Function

NR:

description
PREDICTED: ermin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951378.1 True 574 mRNA 0.50 2 12343695 12344858

Neighbor

gene id symbol gene type direction distance location
LOC110495542 LOC105019723 coding upstream 13127 12318790 ~ 12330568 (+)
LOC118941037 NA coding upstream 26102 12308955 ~ 12317593 (+)
LOC110495539 LOC106575646 coding upstream 35023 12287481 ~ 12308672 (+)
LOC110511883 eed coding upstream 62320 12275263 ~ 12281375 (+)
LOC118941030 LOC106574872 coding upstream 83020 12252017 ~ 12260675 (+)
LOC110495532 LOC106574868 coding downstream 36567 12381425 ~ 12385624 (+)
LOC110527229 tuba8l2 coding downstream 45385 12390243 ~ 12404033 (+)
LOC110513922 stk16 coding downstream 60001 12404859 ~ 12415478 (+)
LOC118941034 LOC106575710 coding downstream 103704 12448562 ~ 12454072 (+)
LOC110527226 LOC106575709 coding downstream 115151 12460009 ~ 12467899 (+)
G1517256 NA non-coding upstream 58077 12285296 ~ 12285618 (+)
G1517254 NA non-coding upstream 70896 12272169 ~ 12272799 (+)
G1517116 NA non-coding upstream 97308 12245883 ~ 12246387 (+)
G1517233 NA non-coding upstream 138281 12204138 ~ 12205414 (+)
G1517231 NA non-coding upstream 140722 12202671 ~ 12202973 (+)
G1517274 NA non-coding downstream 1588 12346446 ~ 12348016 (+)
G1517276 NA non-coding downstream 9238 12354096 ~ 12356750 (+)
G1517278 NA non-coding downstream 13057 12357915 ~ 12359042 (+)
G1517279 NA non-coding downstream 14521 12359379 ~ 12360709 (+)
G1517277 LOC106575774 non-coding downstream 20448 12365306 ~ 12366088 (+)
G1517150 NA other upstream 402590 11940062 ~ 11941897 (+)
G1517019 NA other upstream 699937 11642789 ~ 11643758 (+)
G1517015 NA other upstream 708716 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1251141 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1326606 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 488793 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 589796 12934654 ~ 12936278 (+)
G1517457 NA other downstream 592665 12937523 ~ 12942494 (+)
G1517545 NA other downstream 842243 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2089904 14434762 ~ 14436120 (+)

Expression


Co-expression Network