LOC110527229 (tuba8l2)


Basic Information

Item Value
gene id LOC110527229
gene name tuba8l2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12390243 ~ 12404033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951348.1
TGTCCTCCTCACAGGGAGACCCTGCGTGAGTGTATCTCTGTGCATGTGGGTCAGGCTGGAGTCCAGATGGGCAACACCTGTTGGGAGCTGTACTGCCTGGAGCACGGGATCCAGCCGGACGGCACCATGCCTAACAACAAGGCGGTCGGTAGCACTGACGACTCCTTCACCACGTTCTTCAGCGCCACGGGCATCGGGAAATACGTACCCCGCGCCATCTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGGACAGGTACCTACCGCCAGCTGTTTCACCCCGAGCAGCTGATCTCAGGGAAGGAGGACGCAGCCAATAACTATGCCCGTGGCCACTACACTATCGGCAAGGAGATCATCGACCAAGTGCTGGACAGGATCCGTAAACTGGCTGACCAGTGTACGGGGCTCCAAGGTTTCTTGGTCTTCCACAGCTTCGGAGGAGGTACCGGTTCTGGTTTCACCTCCCTGCTCATGGAGCGTCTCTCAGTCGACTTCGGGAAGAAGTCCAAGCTGGAGTTTGCCATATACCCTGCTCCCCAGGTGTCCACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTCGACAATGAGGCCATCTACGACATCTGCCGTAGAAACCTGGACATTGAGCGCCCCTCTTACACCAACCTCAACAGGCTCATCAGCCAGATTGTCTCTTCCATCACAGCCTCTCTCCGCTTCGATGGTGCCCTTAACGTGGACCTGACAGAGTTTCAGACCAACCTGGTGCCTTACCCCCGCATCCACTTTCCCCTGGCCACCTATGCCCCTGTCATCTCAGCCGAGAAGGCCTACCACGAGCAGCTTTCTGTGGCTGAGATCACCAACTCCTGCTTCGAGCCCGCCAACCAGATGGTAAAGTGCGACCCTCGCCACGGTAAGTACATGGCGTGCTGCCTGCTGTACCGCGGAGACGTGGTGCCCAAGGATGTCAACGTGGCCATCGGCAACATCAAGACAAAGCGAAGCATCCAGTTCGTGGACTGGTGCCCTACAGGTTTCAAAGTGGGCATCAACTACCAGCCACCCACTGTGGTGCCAGGGGGTGACCTGGCCAAGGTCCAGAGAGCTGTGTGCATGTTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCGCGTCTTGACCACAAGTTTGACCTGATGTATGCCAAGCGGGCATTCGTGCACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGGGAAGACATGGCTGCCCTGGAGAAGGACTATGAAGAGGTCGGAATCGACTCATttgaggaggacgaggagggagaggagtatTAGGAGAAGAGTTCAAAGGAGGGATATGTCCTCGGTCGGCTTACGTATCACTGAGAGATAGAACTGCCTTTACTTGACCATGAAGTGGGGAACGGCCTGCTCCTTCCCTTGTCGAAAGTCATCAATCGTGTTTTCTTCACCAAAGACCCCACATCCATCCATGTTTGACACTATTTTCCCAGGTTGACTATGGAACCATGCAGAACCTTGGAAGATTAAGCTGTCTCCCATAAATGTTTCCTTTAAGTTCATGGTACTTCTGTGCGTTCAGATCTATCCTAAACACTAAAGTTACTGCCAATCAGAAAACAAACTAGCCAACTAAACCCCATGGTGTTGGGTCTTAATGAATGTAATTCAGTAACAGTCTTGGAGGATTATTTTGCATTGCATGTTAAGTTACCCCAAAATAATTTATTGGTTTTATCCCTACAGATTGTATTATTTTCTTTGCCATGACTTATTTTAAGAGTTATCACATCAGGTTACTGTTGTGGCTGTATCCCCTCCTTTGTAAATAAAGTTTTATCTCAgttaaa
>XM_036951347.1
ATGGTCTAAAATAACCAACTCCGCCTAACCGGAGCACCGGGCCTTGTAAAACGAACTCGACCTATGAGAGAAGAGGGAGTGTCCAAAACTCCACCCCCGCCCTTCGCAGTTTATAAAAACAGATTGCAGTAACACACGCAGTTAAAACATACTCACGGAGACCCCATTATAGGTTCACTGTGAGAGGTTATACCACCAACACTTTTATTTTTCTACGGAAACGAAGACAAACAGAATCAAAATGCGTGAGTGTATCTCTGTGCATGTGGGTCAGGCTGGAGTCCAGATGGGCAACACCTGTTGGGAGCTGTACTGCCTGGAGCACGGGATCCAGCCGGACGGCACCATGCCTAACAACAAGGCGGTCGGTAGCACTGACGACTCCTTCACCACGTTCTTCAGCGCCACGGGCATCGGGAAATACGTACCCCGCGCCATCTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGGACAGGTACCTACCGCCAGCTGTTTCACCCCGAGCAGCTGATCTCAGGGAAGGAGGACGCAGCCAATAACTATGCCCGTGGCCACTACACTATCGGCAAGGAGATCATCGACCAAGTGCTGGACAGGATCCGTAAACTGGCTGACCAGTGTACGGGGCTCCAAGGTTTCTTGGTCTTCCACAGCTTCGGAGGAGGTACCGGTTCTGGTTTCACCTCCCTGCTCATGGAGCGTCTCTCAGTCGACTTCGGGAAGAAGTCCAAGCTGGAGTTTGCCATATACCCTGCTCCCCAGGTGTCCACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTCGACAATGAGGCCATCTACGACATCTGCCGTAGAAACCTGGACATTGAGCGCCCCTCTTACACCAACCTCAACAGGCTCATCAGCCAGATTGTCTCTTCCATCACAGCCTCTCTCCGCTTCGATGGTGCCCTTAACGTGGACCTGACAGAGTTTCAGACCAACCTGGTGCCTTACCCCCGCATCCACTTTCCCCTGGCCACCTATGCCCCTGTCATCTCAGCCGAGAAGGCCTACCACGAGCAGCTTTCTGTGGCTGAGATCACCAACTCCTGCTTCGAGCCCGCCAACCAGATGGTAAAGTGCGACCCTCGCCACGGTAAGTACATGGCGTGCTGCCTGCTGTACCGCGGAGACGTGGTGCCCAAGGATGTCAACGTGGCCATCGGCAACATCAAGACAAAGCGAAGCATCCAGTTCGTGGACTGGTGCCCTACAGGTTTCAAAGTGGGCATCAACTACCAGCCACCCACTGTGGTGCCAGGGGGTGACCTGGCCAAGGTCCAGAGAGCTGTGTGCATGTTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCGCGTCTTGACCACAAGTTTGACCTGATGTATGCCAAGCGGGCATTCGTGCACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGGGAAGACATGGCTGCCCTGGAGAAGGACTATGAAGAGGTCGGAATCGACTCATttgaggaggacgaggagggagaggagtatTAGGAGAAGAGTTCAAAGGAGGGATATGTCCTCGGTCGGCTTACGTATCACTGAGAGATAGAACTGCCTTTACTTGACCATGAAGTGGGGAACGGCCTGCTCCTTCCCTTGTCGAAAGTCATCAATCGTGTTTTCTTCACCAAAGACCCCACATCCATCCATGTTTGACACTATTTTCCCAGGTTGACTATGGAACCATGCAGAACCTTGGAAGATTAAGCTGTCTCCCATAAATGTTTCCTTTAAGTTCATGGTACTTCTGTGCGTTCAGATCTATCCTAAACACTAAAGTTACTGCCAATCAGAAAACAAACTAGCCAACTAAACCCCATGGTGTTGGGTCTTAATGAATGTAATTCAGTAACAGTCTTGGAGGATTATTTTGCATTGCATGTTAAGTTACCCCAAAATAATTTATTGGTTTTATCCCTACAGATTGTATTATTTTCTTTGCCATGACTTATTTTAAGAGTTATCACATCAGGTTACTGTTGTGGCTGTATCCCCTCCTTTGTAAATAAAGTTTTATCTCAgttaaa

Function

symbol description
tuba8l2 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a).

NR:

description
tubulin alpha-4A chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951348.1 False 1907 mRNA 0.52 4 12390243 12404033
XM_036951347.1 True 2127 mRNA 0.51 4 12395739 12404033

Neighbor

gene id symbol gene type direction distance location
LOC110495532 LOC106574868 coding upstream 4619 12381425 ~ 12385624 (+)
LOC118941038 LOC106574879 coding upstream 45385 12343695 ~ 12344858 (+)
LOC110495542 LOC105019723 coding upstream 59675 12318790 ~ 12330568 (+)
LOC118941037 NA coding upstream 72650 12308955 ~ 12317593 (+)
LOC110495539 LOC106575646 coding upstream 81571 12287481 ~ 12308672 (+)
LOC110513922 stk16 coding downstream 826 12404859 ~ 12415478 (+)
LOC118941034 LOC106575710 coding downstream 44529 12448562 ~ 12454072 (+)
LOC110527226 LOC106575709 coding downstream 55976 12460009 ~ 12467899 (+)
LOC110512988 LOC106575668 coding downstream 138231 12542264 ~ 12545786 (+)
LOC110527217 LOC106575668 coding downstream 145622 12549655 ~ 12552772 (+)
G1517284 LOC106575774 non-coding upstream 13955 12367547 ~ 12376288 (+)
G1517277 LOC106575774 non-coding upstream 24155 12365306 ~ 12366088 (+)
G1517279 NA non-coding upstream 29534 12359379 ~ 12360709 (+)
G1517278 NA non-coding upstream 31201 12357915 ~ 12359042 (+)
G1517276 NA non-coding upstream 33493 12354096 ~ 12356750 (+)
G1517311 NA non-coding downstream 13883 12417916 ~ 12418222 (+)
G1517312 NA non-coding downstream 15336 12419369 ~ 12419744 (+)
G1517318 NA non-coding downstream 35161 12439194 ~ 12439407 (+)
G1517321 NA non-coding downstream 64991 12469024 ~ 12469491 (+)
G1517150 NA other upstream 449138 11940062 ~ 11941897 (+)
G1517019 NA other upstream 746485 11642789 ~ 11643758 (+)
G1517015 NA other upstream 755264 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1297689 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1373154 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 429618 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 530621 12934654 ~ 12936278 (+)
G1517457 NA other downstream 533490 12937523 ~ 12942494 (+)
G1517545 NA other downstream 783068 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2030729 14434762 ~ 14436120 (+)

Expression


Co-expression Network