LOC118941034 (LOC106575710)


Basic Information

Item Value
gene id LOC118941034
gene name LOC106575710
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12448562 ~ 12454072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951367.1
ACAGCAGAAAGTGTTGCtgacagacagagggaaagaggttgGACATTTCTCATGCAGGAGACGTGTGAGGCGCGTTCAGAGGTTTCTTGAGTCGCGTGGAAATGAGAGAGTAATTAGTTAATTAGAAAACGGTCGACTAAACTCACCCCTCGAGTACCTGCATTAGCCAATCACAGCTCAGACAGCCACAGGGGTGGGGGAGACGGCGTCTGAAGGAGTGAAACACTTGCTTTAGTTGGTTAAGTTGCTATTAAACACCAAGACCTGGCTGTTAGTCATCACATGTGATGTGAATACGCGGATAGAGGACTACAGAAACCAAATGGACACTCGGAAAGCATTGCAATTTAATATTTTGTTGTATCATTTTATTTGCTAATAATTTAAGCTCTTCAGGGTTCTTCAGAGAATATTTTACCAGAACTGTTACAGGTAGGTGATAGCGAGGGAGTGAGCAAAACTAAGGAGCCTGCTATCGAAACGCATACTAAAAGTACATCCTCTCATATATTTATCATTGCTCTGACTTATTTTGGTTACGAGAGGGTTGCACTGGCATCCTCAGAGTGACTTTtataaaaaactgaaacattTAAACAGAAGATTGGAGTTGGAGCTGTGCTCTGACGCACAGAACAAGTGTACATTGGCAGGTCTGACCTTTGAGCAGCTCGCGGCAGTTTTCCTGATGAGAGTCGGTATGGAGAAATCGAATAATTTTCGAATCGATGCTCTGCTGGCCGACGAGACTCACCGGGCGAACCGAGACCTCTCCCCAGGTCTGAGCAGTGACAGCCCTGCGGGCAGCCCTGTGTCCTGTCGGCGAGCGGACACCCCGTCCCCGCGCAGGACGCCCACCCATCTTCAAACCGGGATAATCCCCAAGCCGGGACTGCTGAACCTCCCTCACACGGGACTCGCCTCGCTACCCCAAATGTACCCTGCCCCTATGTACCCAATGTCGGCTTTGGGTGGACATCACCCTGCCTTCGCCTACTCCGGCTTCACACACCTTACCCAGTCGTACCCAGACCACCTGAAGGCGGCTGCCATGGCAGGGTCTCTCCCCCTGGAACACTGGATCCGTGCTGGAATGATGATACCACGTCTTCCAGACTACAGTTcaCCCCAGGCAGGACTCCTGGGGAAGTGTCGTAGGCCCCGGACGGCTTTCACCAGTCAGCAGCTCCTTGAGCTGGAGAACCAATTTAAACTCAACAAGTACCTGTCCAGACCCAAACGCTTTGAGGTGGCCACCTCTCTCATGCTGACTGAAACACAGgtGAAGATCTGGTTCCAGAACCGCCGGATGAAGTGGAAGCGCAGCCGCAAGGCCAAGGAGCAGGCATCTGCATCTGCCCAGTCTGAGGCGGAGCGACTGCGCACCGGGGGAAAACAGACCAATGGCAAACCAGCTGAGAATAAACAAGCTTTCACTCAGGATGACGAGGGAGAGCTAGACCTAGaagaagcagaggaggaagaggaggaagaggaggagacgcCACACGAGTTTGATGTTACCATGGGTGGCGCGGTGGGGTTGCAGCGTTCAGCAGACTTTCTGAAGCTCACAGCGGAGCTTGGTTACAACCCCCACAGTCCCTTCTCTGAGGACGACTTAGTGGGGGTGACAGGGGGGGACAGGAAGATAGGCGCAGGGTTGTGAAAAGACACACCCAGAAAAGAAAACGCCAGAGACACTGCTGCTTGACACTGGCTCTGGGAAAGTGGGGGTCTATAGTGTAAAAAGAGAAAAAAATTATGTGCCATTTCAAAAGCCTATGACAGTGTTTTTTGTGTACATAATGCTCAACGCAATGTAATGTTTCTGTGACCCTGATGGAGTTGTTTAAGGCAGGGGTTTCCAAACTGTGGGTcgccccccacccccaaaaaaatgttttaaaggaactcaatccggctttaaacttattctTGAAAGTTGTACTAGTAGAATGCACACTGTGTCATTTCTATATTGGGTattgcatcatcagttcctcttgtcctGTCAGTCATTacataccttagagagctatttataacttgttagaaatgtccagatccactAGCCCATGTCTgctaatgtttttatttattttgtttttcagCTCATagatgttggagtcatgtttttgtcactcaaatatcacatgaatacacattaggcATGGCAAAATGtacagaattgcaggaaataagctttaaacctgcaaaattctctccaccaacaagaagGGTGTGAACAGTCTGTCacgaacagtgcttgtgcccatagaaatagacatgCCTCGCCCGCAGGGGGGTgtgggatgttccccaatgctggaaggggtgTTCCCCAATGCTGGTACCCCTGGTTTAAGGTATAGGTGTTCTTTAGGTTGGACTCGCATCTCTAAGGATGAGGGAATATAAAGCATTTTATATTCATCATCACATCAAGTAAGGCTGAATAAGACACtgaaccctgtctctctctgctgtattttTTCATGGCATGCAActccaaaaaaatgtttttacacaGGACATTCATCGGCTGTAAGACTCCTGTGTTTTTCATCCAATTGGACTGAGAAGTACTGTAGCAGCAGTGAAGCAGTGAACACCACTGACCTCTATTACCTTGTCGTCCATCTCAGCTAAACTCCGCCCCCTGACAGGCTGACTGACAGATGTGGCTCCTCCCACCAGCAGTGCTAAAGGATGTGATACAACCAAGTTACGTTCAGAACCGTTGGACTGTTGCAAACTGCAACTTACACTGGCAGGAGTGAACAAACCCTGAGCAGTTTGCATTAGCTGAAAACGAAGGGGAAAGTGTTGCAAAGTGTTGCAGAATGTTGCGTGATGTTGTGAATGTGCCCCCATGAATGTCAGACATCTTGGATTTACAGACTTTCCATGATGTCTCATATACTCTATCTTGTGTGTGCAATTGAACATTGTTGTCATGTAAATTCAGAtttctgttgttattgttgtttgtttgtttattgttgttaTTTAACCACATTTAAATGTATCTAAATTATTTGAATTGACAGGTAAATGACAGGGAAAAAGTTAATGTGTTTATCTGAAACTGGTCTGTGTTGATGTCAACTGcgtgaaataaaaaaacagaaatgaaaATTGTTCAAATAACTTGAGAAATGTAGGATTTATGCAAAGTTAACTCATTAAAATGAGGGATTGATTTGTGGAGAA

Function

NR:

description
PREDICTED: motor neuron and pancreas homeobox protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951367.1 True 3216 mRNA 0.46 3 12448562 12454072

Neighbor

gene id symbol gene type direction distance location
LOC110513922 stk16 coding upstream 33084 12404859 ~ 12415478 (+)
LOC110527229 tuba8l2 coding upstream 44529 12390243 ~ 12404033 (+)
LOC110495532 LOC106574868 coding upstream 62938 12381425 ~ 12385624 (+)
LOC118941038 LOC106574879 coding upstream 103704 12343695 ~ 12344858 (+)
LOC110495542 LOC105019723 coding upstream 117994 12318790 ~ 12330568 (+)
LOC110527226 LOC106575709 coding downstream 5937 12460009 ~ 12467899 (+)
LOC110512988 LOC106575668 coding downstream 88192 12542264 ~ 12545786 (+)
LOC110527217 LOC106575668 coding downstream 95583 12549655 ~ 12552772 (+)
LOC110527211 ipo5 coding downstream 98501 12552573 ~ 12569425 (+)
LOC110527213 LOC106575703 coding downstream 117839 12571911 ~ 12600335 (+)
G1517318 NA non-coding upstream 9155 12439194 ~ 12439407 (+)
G1517312 NA non-coding upstream 28818 12419369 ~ 12419744 (+)
G1517311 NA non-coding upstream 30340 12417916 ~ 12418222 (+)
G1517302 NA non-coding upstream 55201 12391778 ~ 12393361 (+)
G1517321 NA non-coding downstream 14952 12469024 ~ 12469491 (+)
G1517323 NA non-coding downstream 53031 12507103 ~ 12507368 (+)
G1517326 NA non-coding downstream 55539 12509611 ~ 12509868 (+)
G1517330 NA non-coding downstream 71175 12525247 ~ 12525550 (+)
G1517353 NA non-coding downstream 264010 12718082 ~ 12718713 (+)
G1517150 NA other upstream 507457 11940062 ~ 11941897 (+)
G1517019 NA other upstream 804804 11642789 ~ 11643758 (+)
G1517015 NA other upstream 813583 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1356008 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1431473 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 379579 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 480582 12934654 ~ 12936278 (+)
G1517457 NA other downstream 483451 12937523 ~ 12942494 (+)
G1517545 NA other downstream 733029 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1980690 14434762 ~ 14436120 (+)

Expression


Co-expression Network