LOC110527226 (LOC106575709)


Basic Information

Item Value
gene id LOC110527226
gene name LOC106575709
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12460009 ~ 12467899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951337.1
GCCATAAATTGAAACAACTATACACATGCTTCTAGTCTCCCATTCCCAGACAGAGAACGTTACCCAAAACCATGGCCTGATCAGAACTGGcactgttgAGTGTGTCCGACAAGTCTGGACTTCTGGACTTTGCCAAAAGGCTGGTGAACGTGGGACTGTCACTCGTCGCATCAGGTGGCACCGCCAAAACCCTGCGCGATGCAGGACTGGCTGTTCGGGATGTGTCTGAGCTGACTGGCCATCCAGAGATGCTTGGTGGGAGGGTGAAGACCCTGCATCCTGCTGTACACGGGGGCATCCTGGCCCGGCACACCCCTTCGGACAAGGCTGACATGGAGAAACTGGGCTACAGTCTGGTTAGGGTGGTGGTGTGTAACCTTTACCCGTTTGTGAAGACTATCTCCAACACTAATGTGACCGTGGAAGATGCAGTGGAACAGATTGATATTGGTGGGGTAACCCTGCTCCGTGCAGCGGCCAAGAACCATGCCCGCGTAACCATTGTGTGCGATCCTGCCGACTACCAGCTGGTCGCCGTGGAGATGGAGGGTTCCGATGGTAAAGACACGACCCTGGACACCCGCAAGACTCTGGCCCTGAAGgCCTTTACTCACACGGCTCAGTATGATGAGGCCATCGCGGACTACTTCCGGGGCCAGTACAGCCGTGGAGTATCCCAGCTGCCCCTGCGCTACGGCATGAACCCCCACCAAGCCCCCGCCCAGCTCTACACCCTGCGCCCCACCCTCCCCCTCACAGTGGTAAATGGTTCTCCTGGGTTCATTAACCTTTGTGATGCTCTGAACGCCTGGCAGCTGGTCCGAGAGCTGAAGAGTGCCCTGGGCATGCCCTCTGCCACCTCCTTCAAACATGTCAGCCCTGCAGGGGCTGCGGTGGGTGTTCCTCTGAGTGATGAGGAGGCCAAGGTGTGTATGGTGAATGACATGCTGAAGAACCTGACCCCACTGGCTACAGCCTACGCCCGGGCTAGAGGGTCAGACAGGATGTCCTCCTTCGGCGACTTCATCGCTCTGTCTGACGTGTGTGACGTCCCCACTGCCAAGATCATATCCAGAGAGGTCTCTGATGGCATCATCGCCCCTGGTTACGAAGAGGAGGCCCTCAGGATTCTGTCCAAGAAGAAGAATGGAAACTACTGTGTTCTCCAGATGGACCCAGCCTATGAGCCAGATGAGCCAGAGGTCAGAGTTCTCTTTGGTCTCCACCTCAAACAGAAGAGGAATGGAGCTGTCATTGACAAGGATCTCTTCAGCAACGTCGTCTCCAAGGGCACGCTGTCGGTGGAGGCGCTGCGTGACCTGATCGTGGCCAGCATCACAGTGAAGTACACCCAGTCCAACTCTGTCTGCTACGCCAAGGATGGACAGGTGATTGGGATCGGTGCGGGTCAGCAGTCTCGTATCCACTGCACGCGGCTGGCAGGGGACAAGGCTGATAACTGGTGGCTGAGGCACCACCCGCGGGTGTTGGGCATGAGGTTCAGGAGTGGAGTGAAGCGGGCGGAGATGGCCAATGCCATCGATCAGTACGTCAGCGGCACCATCGGAGAGGGTCCAGACCTGGCAGTATGGAAGGCCATGTATGAGGAGGTCCCAGAGCCTCTGGATGAGACTGAGAAGAAGAACTGGCTGAGCTCTCTACAGGCTGTAGCCCTCAGCTCTGACGCCTTCTTCCCCTTCAGAGACAACGTGGACCGTGCCAAACTGagTGGTGTGGAGTACATTGCTGCCCCGGCTGGGTCCACAGCTGACGAGGTGGTGATCAATGCCTGTAATGAGCAGGGCATCACCCTGGTGCACACCAACCTGAGACTCTTCCACCACTGAATACCTGGAGTGGCTGTCATACAACGCTGCCTGACACATTTCACACGCCACACACCATTATGGCCCTGAGTAACATGTAGCCATGTGTGTCTACATGTTGGAGGTCCACTAACTGCTCTAGAATAGTGATCAACAAAGGTACTAACATAGTATTATTATTTACACTGAGACATTCCTGTCCTACGGTTATCATGCACAAACCGCATGAGTCATGCTGAGGATCAGTCAGATTCCGTTACATTCCGAGCTTGCTTTCATAGTTGTATCTAAGTTACAATGTTACTGTCTGGAAGGTCACGGTTTACCATGAAATAAACTGTTTCTTGAGAAA

Function

NR:

description
bifunctional purine biosynthesis protein PURH-like

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0003937 IMP cyclohydrolase activity molecular_function
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity molecular_function

KEGG:

id description
K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951337.1 True 2178 mRNA 0.55 14 12460009 12467899

Neighbor

gene id symbol gene type direction distance location
LOC118941034 LOC106575710 coding upstream 5937 12448562 ~ 12454072 (+)
LOC110513922 stk16 coding upstream 44531 12404859 ~ 12415478 (+)
LOC110527229 tuba8l2 coding upstream 55976 12390243 ~ 12404033 (+)
LOC110495532 LOC106574868 coding upstream 74385 12381425 ~ 12385624 (+)
LOC118941038 LOC106574879 coding upstream 115151 12343695 ~ 12344858 (+)
LOC110512988 LOC106575668 coding downstream 74365 12542264 ~ 12545786 (+)
LOC110527217 LOC106575668 coding downstream 81756 12549655 ~ 12552772 (+)
LOC110527211 ipo5 coding downstream 84674 12552573 ~ 12569425 (+)
LOC110527213 LOC106575703 coding downstream 104012 12571911 ~ 12600335 (+)
LOC110497019 LOC106574742 coding downstream 132924 12600823 ~ 12610380 (+)
G1517318 NA non-coding upstream 20602 12439194 ~ 12439407 (+)
G1517312 NA non-coding upstream 40265 12419369 ~ 12419744 (+)
G1517311 NA non-coding upstream 41787 12417916 ~ 12418222 (+)
G1517302 NA non-coding upstream 66648 12391778 ~ 12393361 (+)
G1517321 NA non-coding downstream 1125 12469024 ~ 12469491 (+)
G1517323 NA non-coding downstream 39204 12507103 ~ 12507368 (+)
G1517326 NA non-coding downstream 41712 12509611 ~ 12509868 (+)
G1517330 NA non-coding downstream 57348 12525247 ~ 12525550 (+)
G1517353 NA non-coding downstream 250183 12718082 ~ 12718713 (+)
G1517150 NA other upstream 518904 11940062 ~ 11941897 (+)
G1517019 NA other upstream 816251 11642789 ~ 11643758 (+)
G1517015 NA other upstream 825030 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1367455 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1442920 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 365752 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 466755 12934654 ~ 12936278 (+)
G1517457 NA other downstream 469624 12937523 ~ 12942494 (+)
G1517545 NA other downstream 719202 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1966863 14434762 ~ 14436120 (+)

Expression


Co-expression Network