LOC110512988 (LOC106575668)


Basic Information

Item Value
gene id LOC110512988
gene name LOC106575668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12542264 ~ 12545786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951365.1
CACGTGTCTTCATCTAGATGGGGACTTGTATAAAGTCCTCTCCCTGCTGCCCAGGTgactgatttgatttgacacagtgAGTTGTGAGACCTGTTagtaaaggagagagggacatTGTTGATGATGATGCTGGGTCTGGGCTCTGTTGGATTGGTTCTGTTATCTCTGGCTGTCCAGAGTGGACATGGAGCCCAGGACAGTGCTgtctggagtagagaggagaccACTGAGAGGAATTACTACACCAGGTACCACAACATGTCAGAgATTACAGCATGGATGGAGCAGATGAAGAGGGAGAACCCAGATGTTGTGTCCTCCATGGTCTACGGTCAAACCTATGAGAGGAGGAACATCACCTTACTGAAgATTGGTCTGAGTTCTACTGGGAGGAAGAAGGCTATCTGGATGGACTGTGGGATCCACGCCAGAGAATGGATCGCTCCTGCTTTCTGCCAGTACTTtgtcagagagATCCTGAGAACGTACAAAACCGACACCAAGGTGAATGAGATGATGAAAAATCTGGATTTCTACATCACACCAGTCCTAAACGTTGATGGCTACATCTACTCTTGGCATAATGAAAGCACTCGACTGTGGAGGAAGTccagatctccaggaacaggaggCTGTACCTGCTATGGAACAGACCTCAATCGTAACTTCTACGCTAACTGGGGCATGGTTGGTGTCTCGACAGACTGCTGCTTTGAGACCTACTGCGGCACCAAGGCTCTCTCTGAGTCTGAGGCCTGGGCCGTCACAGACATGTTGGGGAAAATGAGGGAAGACATTCTGGCTTTCCTCACCATCCACTCCTATGGCCAGCTAATCCTGGTGCCCTACGGACAtcccaacatctcagcacccaaCTACGATGAGCTGATGGAGGTGGGTCTGGGAGCAGCCAAGGCTATAAAGGCAGTCCATGGGATGGACTACACTGTAGGCACCTCACCTGATGTGTTGTATGCCAACTCGGGATCGTCTCGTGACTTTGCCAGGCTGATCGGCATCCCGTTGTCTTTCACCTTTGAGCTCAGGGACAAGGGCGAACACGGCTTCGAGCTCCCAGAAGACCAGATCCAGCCCACCTGTGAGGAGGCCTACGCCGGAGCACAACACATCATCACCTACACACACGACAAGGCCTTCTACAGCTATGCTGCCACCGTCAGGGCAACACTGTGGACCACACTGCTGGCAGCCTGGGTCTCTAGCGCCACCCTGCCGTAAACTGGGAGGACTGCAGGAGTCAGGCCAGGAGATGGTGGCAGTTTATCAGTATATTCAGAAATGAGACTTTGGACAAAAGTGATAAACTGTCAGATAGACTATAAAATCTGTTTAATCACTTATTTGATCAACTGTGCTTTGTTATTTGTTTCTCTACAATTCTGCTGTAAAATATAACGCTCGTTAAAAGTGACAAAACACAAACACGTTTGTACAGTAGAATATTTTGAATGAACATTTCCGTGATATAAATATACTCAACTGCTATGTAATGCTGTCGTAACGTCCTGCTTCTGTTATCGAGCCCCACGAGTTCAGTGAAGGTCCAGTTCAACATTAGATCAACCTCTGCTCCGGATGAAATATTGGACTGTTTAACTTGATCAGATCCAACAGCACCATTGTGTCCAGTTGCTTTCACCTCTGTCAGGTTTCTAGTTTttattgtcacgtgcacaagtacagtggaATGCCTTTCTTGTTTGCTCGTTCCCAACAATGCGgtaatcaatatcagtagtactATCATTTGTTTGTATAAAAaagtaaagtagaacaaaaacCCAGTGTTCCTGGGTAGCAGAAGGTTACGTTgaccccctctcccctgtccatGTGTAGCTGAGGAGCATTAAAGGCGCTGCTTGGTCAA

Function

NR:

description
carboxypeptidase O-like

GO: NA

KEGG:

id description
K23009 CPO; carboxypeptidase O

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951365.1 True 1891 mRNA 0.48 9 12542264 12545786

Neighbor

gene id symbol gene type direction distance location
LOC110527226 LOC106575709 coding upstream 74365 12460009 ~ 12467899 (+)
LOC118941034 LOC106575710 coding upstream 88192 12448562 ~ 12454072 (+)
LOC110513922 stk16 coding upstream 126786 12404859 ~ 12415478 (+)
LOC110527229 tuba8l2 coding upstream 138231 12390243 ~ 12404033 (+)
LOC110495532 LOC106574868 coding upstream 156640 12381425 ~ 12385624 (+)
LOC110527217 LOC106575668 coding downstream 3869 12549655 ~ 12552772 (+)
LOC110527211 ipo5 coding downstream 6787 12552573 ~ 12569425 (+)
LOC110527213 LOC106575703 coding downstream 26125 12571911 ~ 12600335 (+)
LOC110497019 LOC106574742 coding downstream 55037 12600823 ~ 12610380 (+)
LOC110497015 tmem131 coding downstream 76539 12622325 ~ 12653756 (+)
G1517330 NA non-coding upstream 16714 12525247 ~ 12525550 (+)
G1517326 NA non-coding upstream 32396 12509611 ~ 12509868 (+)
G1517323 NA non-coding upstream 34896 12507103 ~ 12507368 (+)
G1517321 NA non-coding upstream 72773 12469024 ~ 12469491 (+)
G1517318 NA non-coding upstream 102857 12439194 ~ 12439407 (+)
G1517353 NA non-coding downstream 172296 12718082 ~ 12718713 (+)
G1517386 NA non-coding downstream 172989 12718775 ~ 12718999 (+)
G1517408 NA non-coding downstream 218175 12763961 ~ 12765207 (+)
G1517409 NA non-coding downstream 228426 12774212 ~ 12785975 (+)
G1517410 NA non-coding downstream 243759 12789545 ~ 12805543 (+)
G1517150 NA other upstream 601159 11940062 ~ 11941897 (+)
G1517019 NA other upstream 898506 11642789 ~ 11643758 (+)
G1517015 NA other upstream 907285 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1449710 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1525175 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 287865 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 388868 12934654 ~ 12936278 (+)
G1517457 NA other downstream 391737 12937523 ~ 12942494 (+)
G1517545 NA other downstream 641315 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1888976 14434762 ~ 14436120 (+)

Expression


Co-expression Network