LOC110527217 (LOC106575668)


Basic Information

Item Value
gene id LOC110527217
gene name LOC106575668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12549655 ~ 12552772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608381.2
AGGTgactgatttgatttgacacagtgAGTTGTGAGACATGTTagtaaaggagagagggacatTGTTGATGATGATGCTGGGTCTGGGCTCTGTTGGATTGGTTCTGTTATCTCTGGCTGTCCAGAGTGGACATGGAGCCCAGGACAGTGCTgtctggagtagagaggagaccACTGAGAGGAATTACTACACCAGGTACCACAATATGTCAGAGATTACAGCATGGATGGAGCAGATGAAGAGGGAGAACCCAGATGTTGTGTCCTCCATGGTCTACGGTCAAACCTATGAGAGGAGGAACATCACCTTACTGAAgATTGGTCTGCGTTCTACTGGGAGGAAGAAGGCTATCTGGATGGACTGTGGGATCCACGCCAGAGAATGGATCACTCCCGCTTTCTGCCAGTACTTTGTTAAAGagATCCTGAGAACGTACAAAACCGACACCAAGGTGAATGAGATGATGAAAAATCTGGATTTCTACATCACACCAGTCCTAAACGTTGATGGCTACATCTACTCTTGGCATAATGAAAGCACTCGACTGTGGAGGAAGTccagatctccaggaacaggaggCTGTACCTGCTATGGAACAGACCTCAATCGTAACTTCTACGCTAACTGGGGCATGGTTGGTGTCTCGACAGACTGCTGCAATCTGTTCTACTGCGGCACCAAGGCTCTCTCTGAGTCTGAGGCCTGGGCCGTCACAGACATGTTGGGGAAAATGAGGGAAGATATTCTGGCTTTCCTCACCATCCACTCCTATGGCCAGCAGCTCCTGGTGCCCTACGGACATCCCAACACTTCAGCACCCAACCACGATGAGCTGATGGAGGTGGGTCTGGGAGCAGCCAAGGCTATAAAGACTGTCCATGGGATGGACTACACTGTAGGCACCTCACCTGATATCCTGTatcCCTTCTCGGGTTCGTCTCAGGACTTTGCCAGGCTGATCGGCATCCCGTTGTCTTTCACCTTTGAGCTCAGGGACAAGGGCGAACACGGCTTCGAGCTCCCAGAGGACCAGATCCAGCCCACCTGTGAGGAGGCCTACGCCGGAGCACAACACATCATCACCTACACACACGACAAGGCCTTCTACAGCTATGCTGCCACCGTCAGGGCAACACTGTGGACCACACTGCTGGCAGCCTGGGTCTCTAGCACCATCCTGCTGTAGACTGGGAGGACTGCAGGAGTCAGATGAGACACACTTATTTTGTCAAGTGTGGTATGTTACTTGTGTCTTTAAAACTATACTGTAAAACTGTTAAATTATCATCTACTTCTTATGTTCCTTTTAATATTGACAAAACACATACAGGTTATTTGTAGTACAGTGTGCTTTGCATTAACATTTCATTGATATAAATACACTCAAACCGTAA

Function

NR:

description
carboxypeptidase O-like

GO: NA

KEGG:

id description
K23009 CPO; carboxypeptidase O

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608381.2 True 1395 mRNA 0.49 9 12549655 12552772

Neighbor

gene id symbol gene type direction distance location
LOC110512988 LOC106575668 coding upstream 3869 12542264 ~ 12545786 (+)
LOC110527226 LOC106575709 coding upstream 81756 12460009 ~ 12467899 (+)
LOC118941034 LOC106575710 coding upstream 95583 12448562 ~ 12454072 (+)
LOC110513922 stk16 coding upstream 134177 12404859 ~ 12415478 (+)
LOC110527229 tuba8l2 coding upstream 145622 12390243 ~ 12404033 (+)
LOC110527213 LOC106575703 coding downstream 19139 12571911 ~ 12600335 (+)
LOC110497019 LOC106574742 coding downstream 48051 12600823 ~ 12610380 (+)
LOC110497015 tmem131 coding downstream 69553 12622325 ~ 12653756 (+)
LOC110527205 pcid2 coding downstream 197151 12749923 ~ 12829550 (+)
LOC110495518 LOC106574650 coding downstream 321705 12874477 ~ 12879111 (+)
G1517330 NA non-coding upstream 24105 12525247 ~ 12525550 (+)
G1517326 NA non-coding upstream 39787 12509611 ~ 12509868 (+)
G1517323 NA non-coding upstream 42287 12507103 ~ 12507368 (+)
G1517321 NA non-coding upstream 80164 12469024 ~ 12469491 (+)
G1517318 NA non-coding upstream 110248 12439194 ~ 12439407 (+)
G1517353 NA non-coding downstream 165310 12718082 ~ 12718713 (+)
G1517386 NA non-coding downstream 166003 12718775 ~ 12718999 (+)
G1517408 NA non-coding downstream 211189 12763961 ~ 12765207 (+)
G1517409 NA non-coding downstream 221440 12774212 ~ 12785975 (+)
G1517410 NA non-coding downstream 236773 12789545 ~ 12805543 (+)
G1517150 NA other upstream 608550 11940062 ~ 11941897 (+)
G1517019 NA other upstream 905897 11642789 ~ 11643758 (+)
G1517015 NA other upstream 914676 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1457101 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1532566 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 280879 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 381882 12934654 ~ 12936278 (+)
G1517457 NA other downstream 384751 12937523 ~ 12942494 (+)
G1517545 NA other downstream 634329 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1881990 14434762 ~ 14436120 (+)

Expression


Co-expression Network