LOC110527211 (ipo5)


Basic Information

Item Value
gene id LOC110527211
gene name ipo5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12552573 ~ 12569425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951306.1
GACTGCAGGAGTCAGATGAGACACACTTATTTTGTCAAGTGTGGCAACTTCACCAGGCACAGCTCCTCCTCCGCAACGAACGGAACGGAACGAGCCAGGTTGACACGTGAATATCACTTCCGGGGTCGCAACGTCTGCCGGCTTTCCTTTCCGCGGTCTCTCTTGGCTGAGCGTTTTCTGGATCTCACTGCAATGGCGGAGCAGCAGCAGTTCTACATCTTGCTGGGCAACCTGATGAGCCCTGACAACGACATCAGGAAACAGTCGGAGGAAGCTTATGACACCATCCCCGGTCAGACAAAGATCACATTTTTGCTGCAGGCCATCCGAGATGCAGCCTGCGCAGAAGAGGTCAAGACGATGGCGGCGGTGCTGCTGCGTCGGCTGCTGTCGTCCTCCTTCGAGGAGATCTACCCCGGCCTGACGGTGGACATGCAGACGGCCATCAAGACAGAGCTGGTCACCAGCATCCAGACAGAGGCCTCGCCCAACATTCGCAAGAAGGTCGCGGACATCGCTGCAGAGCTCTGCCGTAACCTCCTAGATGATGATGGAAACAACCAGTGGCCAGAGCTGCTCAAGTTCCTGTTTGACTCGGTCAACTCTGACAACGTTGGCCTGAGAGAGGCCGCCCTGCATATATTCTGGAACTTCCCAGGTATCTTTGGCAACCAgcagcagcactacatggaggtGATCAAGAGGATGCTGGTCCAGTGTATGCAGGACCAGGAGAACCCACAGATCCGTACCCTAGCTGCCCGTGCTGCAGCCTCCTTCGTCTTGTCCAACGAGGGCAACGCTGCCCTGCTGAAGCACTTCTCTGACCTGCTGCCAGGCATCTTGCAGGCGGTGAATGAGTCGTGTTACCAGGGAGATGACTCTGTGCTGAAGTCTCTGGTTGAGATCGCTGACACGGCCCCCAAGTACCTGCGACCCAACCTGGAGGCCACGCTGCAGCTCAGCCTGAAGCTGTGTGCTGACACCACCCTGACCAACATGCAGAGGCAGCTGGCCCTGGAGGTTATCGTCACGCTGTCCGAGACTGCCGCCGCTATGCTGAGGAAACACACCGCCATCGTGGCATCCAGCGTTCCCCAGATGCTGGCTATGATGGTGGAtctggaggaggacgaggagtgGTCTATGGCTGATGAGCTGGAGGACGATGACTTTGACAGCAATGCAGTTGCAGGAGAGAGCGCTCTGGACAGAATGGCCTGTGGGCTGGGAGGAAAGATGGTGCTGCCCATGATCAAACAGCACATCATGACTATGTTGCAGAACCCTGACTGGAAGTACCGCCACGCCGGCCTCATGGCGCTGTCGGCCATCGGGGAGGGCTGCCACCAACAGATGGAGGCCATCCTCAATGAGATCGTCAGCTTCCTGCTACTGTTCTGTCAGGACCCTCACCCCAGAGTCCGTTATGCTGCATGCAACGCCATCGGGCAGATGGCCACCGATTTCGCCCCCACCTTCCAAAAGAAATTCCACGATAAGGTGATCTCTGCCCTACTGCAGACCATGGAGGACCAGACCAACCCCCGTGTCCAGGCCCACGCTGCCGCGGCCCTCATCAACTTCACTGAGGACTGTCCCAAGTCCCTCCTGATTCCCTATCTGGACAGCCTGGTCCAGCACCTACATGTCATCATGGTGGCCAAACTACAGgagCTGATCCAGAAGGGTACCAAGCTGGTTCTGGAGCAGGTGGTGACGTCCATAGCGTCTGTGGCGGACACGGCCGAGGAGAAGTTTGTTCCCTACTACGACCTGTTCATGCCCTCCCTCAAACATATCGTGGAGAATGCTGTGCAGAAGGAGCTGAGGCTGCTCCGAGGGAAGACCATTGAGTGTATCAGCCTCATCGGCCTGGCTGTCGGCAAGGACAAGTTCATGCCTGATGCGTCAGCTGTGATGCAGCTGCTGCTGAAGACCCAGACCGACTTCAATGACCTGGAGGATGACGACCCACAGATCTCCTACATGATCTCAGCCTGGGCCAGGATGTGTAAGATCCTGGGGAAAGAGTTCCAGCAGTACCTACCTGTGGTCATGGGGCCCCTAATGAAGACTGCCTCTATCAAGCCAGAGGTGGCCCTCCTGGACACCCAGGACATGGAGAACATGTCGGAGGATGACGGATGGGAGTTTGTGAACCTGGGAGACCAGCAGAGCTTCGGCATCAAGACAGCCGGGTTGGAAGAGAAGGCCACCGCCTGCCAGATGCTGGTGTGCTATGCCAAAGAGTTGAAGGAAGGGTTTGTGGAGTACACAGAACAGGTGGTCAAGCTGATGGTTCCTCTGCTCAAGTTCTACTTCCACGATGGTGTGCGGGTGGCAGCAGCGGAGTCCATGCCCCTGCTGCTGGAGTGTGCGCGGGTACGAGGCCCAGACTACCTCACACAGATGTGGCACTTCATGTGCGACGCCCTCATCAAGGCCATTGGCACAGAGCCAGACTCGGATGTCCTATCAGAAATCATGCATTCGTTTGCCAAGTGTATTGAGTTAATGGGAGAGGGCTGCCTGAACAATGAGCACTTTGAAGAGCTGGGAGGGATCCTGAAGGGGAAGCTGGAGGAACACTTTAAGAACCAGGAGCTGAGACAGGCCAAACGACAGGATGAGGACTACGACGAGGGCATGGAGGAAACGTTACAAGACGAGGATGAAAACGATGTGTACATACTGACCAAAGTGTCAGACATTTTGCACTCTGTGTTCAGCAGCTACAAGGAACAAGTGCTGCCGTGGTTTGAGCAGCTTCTACAGCTCATCGTACAGCTCGTGTGTCCTAGCAGGCCGTGGGCAGACAGGCAGTGGGGTCTGTGCATCTTTGACGACGTGGTTGAGCACTGCAGCCCCTCTTCCTTTAAATACGCGGAACTCTTCCTGCGGGCCATGGCCCTGTCGCTGTGTGATACCAGCCCCGAAGTGAGACAAGCTGCAGCCTACGGCGTAGGAGTCATGGCTCAGTACGGAGGAGAGAACTACCGACCCTTCTGCACCGAGGCACTGCCCACGCTGTTGGGTGTGATCCAGTCTCCAGACTCCAAGGTCAAGGAGAACGTCAACGCCACAGAGAACTGCATATCAGCCGTGGGCAAGGTCATGAGATTCAGGCCTGAGTGTGCCAATGTCAACGAGATCCTTCCCCATTGGCTCTCCTGGCTGCCACTCAACGAAGACAAGGAGGAAGCTGTGCACACCTTTGACTTCCTTTGTGACCTTATCGAAAGCAACAATCCTATTGTCCTCGGACCAGACAATGCAAATCTTCCCAAGATATTCCAGATCATCGCTGAAGGGGTCGCCAACGAGTCGGTCAAGAGTGAGGATGCATGCAGCAAGAGATTGGCAAATGTCATCCGCCAAGTACAGggttctggaggactgtggaCCCAGTGTGTCACGATGCTGAACGAGACTCAACAGAaggccatccaggacctcctcAACACTGCTTGAGAAGCCTTATCCCCTTCCTTTGTTGGAAAACAACAAGACCATGTTTAAACATCTAGCTCCTGGATCTCCTCCTTCCTAGatcaccacctccctcccatCTCCTTTTCCATCTCTGATCTGTAGCGTGTGTGGACTTCACTGCAGCCTCCTGCTGCCCCCCTCCCTATCCAGTCAGTCTCCCCTGCACTCGACTAACTGTAGGGACCAGGTTGATTTGTCTGAGTGACTGTCAATAAGACCCTGCCCCCTCCAGAGGATGACCCCTCCCGTTTAAGTCACTAATGTGTTATCGCCCACTGGAGTGGTCTATACCCTCTTCTTCCTGAATCCTGACGGTTGGAGCGTTGTTGGCCTCACCTCCACAAAGGGAAAACAAATGAACACAAGTATTAATTCAGTTTCTTCTCCATCCTGTTACACTGTTCAGAATCATCTGGTCTTTTGATGAAATTGACTTAACCCTTTCCACCACAAGTTTAACTGGTGTAGTTGTGCTCTGTGGAACCATGTGAAAATGTCATGTTTACCCAGCTGTAATAAACTCCTAGAAGTATCAGACTTGGTAGGACCCAGCTGCTGTACGAGGAGTGTTGACTAGAGGACTGGGGAATGGAAGAGGGGAGTGTGTACATGTCATGGGGTGACCACTTCCTGCCTCtgaattttgtttttttgtttaggCTTTTTTTGTTTGTCTTTCTGACGGAGCCGCACGGTGGCACCTGGAGGAAACGGCCTCTGTATGCTGTTGGCTCACTGATCTGAATCTGTCTATTCTCAAGACTAACAGCATGTGTCAGTGGCTAACTCAAGCTCTCCTTTAATAAATGAGTGAGGAAATCATGATTGTCTGTCTAGGAGATTTAAAACAAACACTTTAGGTGTTATTTTCCTTTCCCTGAAACCCTGTATAAATGTAGGTTTGTTTTTCATGAAGGTTTACACCAATTGAATGAAGTTGGTTTAGGATTAAGTGTCTTAGCCACAATGTGCTGGGTTATAGACATGTAGACGCATGGAATAGACTTAATGTGTGCATCCATCCTCCGCTAACATTTGGTTTAGAACCTTAGCACCCCTGCAGATATTTGGTGGATGTCAACAATACATTTCAGATTGGCAGAATTTGTCATAATGCATTAATGTAATGCATGGGTTGTCACTTTCACTGCAATGTAGGTTTATTATACATTATTGAAATAAGGAAAGTTGATTTTACCCTGAACAAAAAATAAACCACATGCAACAGTT

Function

symbol description
ipo5 Enables RNA binding activity. Involved in ribosomal protein import into nucleus. Located in membrane.

NR:

description
importin-5

GO: NA

KEGG:

id description
K20222 IPO5, KPNB3, RANBP5; importin-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951306.1 True 4725 mRNA 0.53 26 12552573 12569425

Neighbor

gene id symbol gene type direction distance location
LOC110512988 LOC106575668 coding upstream 6787 12542264 ~ 12545786 (+)
LOC110527226 LOC106575709 coding upstream 84674 12460009 ~ 12467899 (+)
LOC118941034 LOC106575710 coding upstream 98501 12448562 ~ 12454072 (+)
LOC110513922 stk16 coding upstream 137095 12404859 ~ 12415478 (+)
LOC110527229 tuba8l2 coding upstream 148540 12390243 ~ 12404033 (+)
LOC110527213 LOC106575703 coding downstream 2486 12571911 ~ 12600335 (+)
LOC110497019 LOC106574742 coding downstream 31398 12600823 ~ 12610380 (+)
LOC110497015 tmem131 coding downstream 52900 12622325 ~ 12653756 (+)
LOC110527205 pcid2 coding downstream 180498 12749923 ~ 12829550 (+)
LOC110495518 LOC106574650 coding downstream 305052 12874477 ~ 12879111 (+)
G1517330 NA non-coding upstream 27023 12525247 ~ 12525550 (+)
G1517326 NA non-coding upstream 42705 12509611 ~ 12509868 (+)
G1517323 NA non-coding upstream 45205 12507103 ~ 12507368 (+)
G1517321 NA non-coding upstream 83082 12469024 ~ 12469491 (+)
G1517318 NA non-coding upstream 113166 12439194 ~ 12439407 (+)
G1517353 NA non-coding downstream 148657 12718082 ~ 12718713 (+)
G1517386 NA non-coding downstream 149350 12718775 ~ 12718999 (+)
G1517408 NA non-coding downstream 194536 12763961 ~ 12765207 (+)
G1517409 NA non-coding downstream 204787 12774212 ~ 12785975 (+)
G1517410 NA non-coding downstream 220120 12789545 ~ 12805543 (+)
G1517150 NA other upstream 611468 11940062 ~ 11941897 (+)
G1517019 NA other upstream 908815 11642789 ~ 11643758 (+)
G1517015 NA other upstream 917594 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1460019 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1535484 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 264226 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 365229 12934654 ~ 12936278 (+)
G1517457 NA other downstream 368098 12937523 ~ 12942494 (+)
G1517545 NA other downstream 617676 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1865337 14434762 ~ 14436120 (+)

Expression


Co-expression Network