LOC110527213 (LOC106575703)


Basic Information

Item Value
gene id LOC110527213
gene name LOC106575703
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12571911 ~ 12600335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951364.1
AAAGACTAGAGCAAAAAAGTGCATGTTTAGAATGTCAAATAGCCTCACGCTGCTGTACACAGTTTGCACTGTAGAGAAATATATTTTATCTTCATGGTTTGCACACTGGTTGTAGTTTGCCGATCCTGAATGTATGTATCTAAAAAAACATTTGTCTGTTTATTCACTTCCTTCAGATCCATGATTGAATGCAAAGCACACGAGTTGAAATACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACAACTCAACAACACCACAAGATGTTTTACAGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAAATCACCAGATCATCGCTATTAAACCAGATCAAACCACAACTGCAGTACAGTCAACAGAAAAGAGTCCAATAGCTGCAGGATCCATGATTGAACACAAAGTGGCACACAATATGAAGTACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACGACTCAACAACACCACAAGATGTTTTACGGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCACCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAATGGGTAAAGATGTCATTCTGGTAGTGCTGCATCACACCTTCAACCCAGACTACACTGTACCTTACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGCCTGGGACTACTGGACTGTCCTCGCAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACATAGATCCTGTGGCCAGAAATTGTGACTGTCTAGCTTGGATTCTAAACGCTGCCATGGTGTTACTGTCTTTATGCTGCAACTGCCCTTGTGTGGTGTTTTCTTACATGATGGGGCTCATCTCAGGCAAAAATCCATGTCCCTTTGCAAGACCTCATTCCAGAAATGAAGACTATTTACATTTGGCCCAACTATGAACATGTGATAATATATAGTGTGACTCCTGTAAACGTGATGATCAATTCCCTTAGAGAACAAATGTTATGGATTACATCTTTAATTGCACGTCATTTAGGCCTACTTGAGAAAGTACAGATCATTTACAGTGGTAATGTATGGAATTAGGCCTGGCTGTATCAATGTAACAATAATatggaaataaaaaaaaacaggattTGTGGAAGGGCACGAGTCTCAACATCA
>XM_036951363.1
CAAATAGCCTCACGCTGCTGTACACAGTTTGCACTGTAGAGAAATATATTTTATCTTCATGGTTTGCACACTGGTTGTAGTTTGCCGATCCTGAATGTATGTATCTAAAAAAACATTTGTCTGTTTATTCACTTCCTTCAGATCCATGATTGAATGCAAAGCACACGAGTTGAAATACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACAACTCAACAACACCACAAGATGTTTTACAGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAAATCACCAGATCATCGCTATTAAACCAGATCAAACCACAACTGCAGTACAGTCAACAGAAAAGAGTCCAATAGCTGCAGGATCCATGATTGAACACAAAGTGGCACACAATATGAAGTACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACGACTCAACAACACCACAAGATGTTTTACGGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCACCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAATGGGTAAAGATGTCATTCTGGTAGTGCTGCATCACACCTTCAACCCAGACTACACTGTACCTTACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGCCTGGGACTACTGGACTGTCCTCGCAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACACAGTGGACTGTCTGTTCCATGAGAGCCAGGGACTACTGGACTGTCCTCACAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACATAGATCCTGTGGCCAGAAATTGTGACTGTCTAGCTTGGATTCTAAACGCTGCCATGGTGTTACTGTCTTTATGCTGCAACTGCCCTTGTGTGGTGTTTTCTTACATGATGGGGCTCATCTCAGGCAAAAATCCATGTCCCTTTGCAAGACCTCATTCCAGAAATGAAGACTATTTACATTTGGCCCAACTATGAACATGTGATAATATATAGTGTGACTCCTGTAAACGTGATGATCAATTCCCTTAGAGAACAAATGTTATGGATTACATCTTTAATTGCACGTCATTTAGGCCTACTTGAGAAAGTACAGATCATTTACAGTGGTAATGTATGGAATTAGGCCTGGCTGTATCAATGTAACAATAATatggaaataaaaaaaaacaggattTGTGGAAGGGCACGAGTCTCAACATCA
>XM_036951359.1
TAGCCTCACGCTGCTGTACACAGTTTGCACTGTAGAGAAATATATTTTATCTTCATGGTTTGCACACTGGTTGTAGTTTGCCGATCCTGAATGTATGTATCTAAAAAAACATTTGTCTGTTTATTCACTTCCTTCAGATCCATGATTGAATGCAAAGCACACGAGTTGAAATACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACAACTCAACAACACCACAAGATGTTTTACAGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAAATCACCAGATCATCGCTATTAAACCAGATCAAACCACAACTGCAGTACAGTCAACAGAAAAGAGTCCAATAGCTGCAGGATCCATGATTGAACACAAAGTTGCACACAATATGAAGTACTACACAGTTGAGACTGGCAATACTTTGGAAACTCATATTCAGTTTATGAGACGACTCAACAACACCACAAGATGTTTTACGGAAGTCAAGTCTCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAATGGGTAAAGATGTCATTCTGGTAGTGCTGCATCACACCTTCAACCCAGACTACACTGTACCTTACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGACTGGGAGGACTACTGGACTGTCCTCGCAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACACAGTGGACTGTCTGTTCCATGAGAGCCAGGGACTACTGGACTGTCCTCACAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACACAGTGGACTGTCTGTTCCATGAGAGCCAGGGACTACTGGACTGTCCTCACAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACATAGATCCTGTGGCCAGAAATTGTGACTGTCTAGCTTGGATTCTAAACGCTGCCATGGTGTTACTGTCTTTATGCTGCAACTGCCCTTGTGTGGTGTTTTCTTACATGATGGGGCTCATCTCAGGCAAAAATCCATGTCCCTTTGCAAGACCTCATTCCAGAAATGAAGACTATTTACATTTGGCCCAACTATGAACATGTGATAATATATAGTGTGACTCCTGTAAACGTGATGATCAATTCCCTTAGAGAACAAATGTTATGGATTACATCTTTAATTGCACGTCATTTAGGCCTACTTGAGAAAGTACAGATCATTTACAGTGGTAATGTATGGAATTAGGCCTGGCTGTATCAATGTAACAATAATatggaaataaaaaaaaacaggattTGTGGAAGGGCACGAGTCTCAACATCA
>XM_036951361.1
TAGCCTCACGCTGCTGTACACAGTTTGCACTGTAGAGAAATATATTTTATCTTCATGGTTTGCACACTGGTTGTAGTTTGCCGATCCTGAATGTATGTATCTAAAAAAACATTTGTCTGTTTATTCACTTCCTTCAGATCCATGATTGAATGCAAAGCACACGAGTTGAAATACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACAACTCAACAACACCACAAGATGTTTTACAGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAAATCACCAGATCATCGCTATTAAACCAGATCAAACCACAACTGCAGTACAGTCAACAGAAAAGAGTCCAATAGCTGCAGGATCCATGATTGAACACAAAGTTGCACACAATATGAAGTACTACACAGTTGAGACTGGCAATACTTTGGAAACTCATATTCAGTTTATGAGACGACTCAACAACACCACAAGATGTTTTACGGAAGTCAAGTCTCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAATGGGTAAAGATGTCATTCTGGTAGTGCTGCATCACACCTTCAACCCAGACTACACTGTACCTTACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGACTGGGAGGACTACTGGACTGTCCTCGCAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACACAGTGGACTGTCTGTTCCATGAGAGCCAGGGACTACTGGACTGTCCTCACAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACATAGATCCTGTGGCCAGAAATTGTGACTGTCTAGCTTGGATTCTAAACGCTGCCATGGTGTTACTGTCTTTATGCTGCAACTGCCCTTGTGTGGTGTTTTCTTACATGATGGGGCTCATCTCAGGCAAAAATCCATGTCCCTTTGCAAGACCTCATTCCAGAAATGAAGACTATTTACATTTGGCCCAACTATGAACATGTGATAATATATAGTGTGACTCCTGTAAACGTGATGATCAATTCCCTTAGAGAACAAATGTTATGGATTACATCTTTAATTGCACGTCATTTAGGCCTACTTGAGAAAGTACAGATCATTTACAGTGGTAATGTATGGAATTAGGCCTGGCTGTATCAATGTAACAATAATatggaaataaaaaaaaacaggattTGTGGAAGGGCACGAGTCTCAACATCA
>XM_036951360.1
AGCCTCACGCTGCTGTACACAGTTTGCACTGTAGAGAAATATATTTTATCTTCATGGTTTGCACACTGGTTGTAGTTTGCCGATCCTGAATGTATGTATCTAAAAAAACATTTGTCTGTTTATTCACTTCCTTCAGATCCATGATTGAATGCAAAGCACACGAGTTGAAATACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACAACTCAACAACACCACAAGATGTTTTACAGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAAATCACCAGATCATCGCTATTAAACCAGATCAAACCACAACTGCAGTACAGTCAACAGAAAAGAGTCCAATAGCTGCAGGATCCATGATTGAACACAAAGTTGCACACAATATGAAGTACTACACAGTTGAGACTGGCAATACTTTGGAAACTCATATTCAGTTTATGAGACGACTCAACAACACCACAAGATGTTTTACGGAAGTCAAGTCTCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAATGGGTAAAGATGTCATTCTGGTAGTGCTGCATCACACCTTCAACCCAGACTACACTGTACCTTACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGACTGGGAGGACTACTGGACTGTCCTCGCAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACACAGTGGACTGTCTGTTCCATGAGAGCCAGGGACTACTGGACTGTCCTCACAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACATAGATCCTGTGGCCAGAAATCGTGACTGTCTAGCTTGGATTCTAAACGCTGCCATGGTGTTACTGTCTTTATGCTGCAACTGCCCTTGTGTGGTGTTTTCTTACATGATGGGGCTCATCTCAGGCAAAAATCCATGTCCCTTTGCAAGACCTCATTCCAGAAATGAAGACTATTTACATTTGGCCCAACTATGAACATGTGATAATATATAGTGTGACTCCTGTAAACGTGATGATCAATTCCCTTAGAGAACAAATGTTATGGATTACATCTTTAATTGCACGTCATTTAGGCCTACTTGAGAAAGTACAGATCATTTACAGTGGTAATGTATGGAATTAGGCCTGGCTGTATCAATGTAACAATAATatggaaataaaaaaaaacaggattTGTGGAAGGGCACGAGTCTCAACATCA
>XM_021608373.2
CACGCTGCTGTACACAGTTTGCACTGTAGAGAAATATATTTTATCTTCATGGTTTGCACACTGGTTGTAGTTTGCCGATCCTGAATGTATGTATCTAAAAAAACATTTGTCTGTTTATTCACTTCCTTCAGATCCATGATTGAATGCAAAGCACACGAGTTGAAATACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACAACTCAACAACACCACAAGATGTTTTACAGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAAATCACCAGATCATCGCTATTAAACCAGATCAAACCACAACTGCAGTACAGTCAACAGAAAAGAGTCCAATAGCTGCAGGATCCATGATTGAACACAAAGTTGCACACAATATGAAGTACTACACAGTTGAGACTGGCAATACTTTGGAAACTCATATTCAGTTTATGAGACGACTCAACAACACCACAAGATGTTTTACGGAAGTCAAGTCTCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAATGGGTAAAGATGTCATTCTGGTAGTGCTGCATCACACCTTCAACCCAGACTACACTGTACCTTACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGACTGGGAGGACTACTGGACTGTCCTCGCAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACACAGTGGACTGTCTGTTCCATGAGAGCCAGGGACTACTGGACTGTCCTCACAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACATAGATCCTGTGGCCAGAAATCGTGACTGTCTAGCTTGGATTCTAAACGCTGCCATGACCAGAAGTTGTGGCTTTCTAGCTTGGATTCTAAACGGTGTCATGTGGGCAGTGTCTTCAGGCTACAACTACGTTTTCATTCACAATCCACATCCCTCTACAAGGCCTCATTCTGACAGTCTATCTGTGATTCGGAGCAATATAATGTACACAGTGTCTTCAGTCTACAGCTACCTCTGTACACGGCTTTCATATGTGAAGCGGCGCTTCTGTGACAATAATTAGGTTCCAGTAGGTTCAAAATCCACATCCCTCTTCAAGACCTCGTTCCAGAAGTGATGAAAGCAGTTCCACTTTTGTACCAACAATGAAGACATGCTAATTGTTTTTATGGATTCCATCTTTAATTGTATGGCCTACTTAAGAAAATGTCTTTACTTTTGATGTCAAGAGCACTTGCAGGTGTAATGTATAGAAATTGGGGCCGATattaaacattttaataaaaatgaatgaaaaataaTAAA

Function

NR:

description
uncharacterized protein LOC110527213 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951364.1 False 1306 mRNA 0.42 10 12571911 12600335
XM_036951363.1 False 1361 mRNA 0.43 9 12571946 12600335
XM_036951359.1 False 1450 mRNA 0.43 10 12571950 12600335
XM_036951361.1 False 1360 mRNA 0.42 11 12571950 12600335
XM_036951360.1 False 1359 mRNA 0.43 9 12571951 12600335
XM_021608373.2 True 1457 mRNA 0.42 12 12571956 12586151

Neighbor

gene id symbol gene type direction distance location
LOC110527211 ipo5 coding upstream 2486 12552573 ~ 12569425 (+)
LOC110527217 LOC106575668 coding upstream 19139 12549655 ~ 12552772 (+)
LOC110512988 LOC106575668 coding upstream 26125 12542264 ~ 12545786 (+)
LOC110527226 LOC106575709 coding upstream 104012 12460009 ~ 12467899 (+)
LOC118941034 LOC106575710 coding upstream 117839 12448562 ~ 12454072 (+)
LOC110497019 LOC106574742 coding downstream 488 12600823 ~ 12610380 (+)
LOC110497015 tmem131 coding downstream 21990 12622325 ~ 12653756 (+)
LOC110527205 pcid2 coding downstream 149588 12749923 ~ 12829550 (+)
LOC110495518 LOC106574650 coding downstream 274142 12874477 ~ 12879111 (+)
LOC110495515 creg1 coding downstream 282176 12882511 ~ 12885631 (+)
G1517330 NA non-coding upstream 46361 12525247 ~ 12525550 (+)
G1517326 NA non-coding upstream 62043 12509611 ~ 12509868 (+)
G1517323 NA non-coding upstream 64543 12507103 ~ 12507368 (+)
G1517321 NA non-coding upstream 102420 12469024 ~ 12469491 (+)
G1517318 NA non-coding upstream 132504 12439194 ~ 12439407 (+)
G1517353 NA non-coding downstream 117747 12718082 ~ 12718713 (+)
G1517386 NA non-coding downstream 118440 12718775 ~ 12718999 (+)
G1517408 NA non-coding downstream 163626 12763961 ~ 12765207 (+)
G1517409 NA non-coding downstream 173877 12774212 ~ 12785975 (+)
G1517410 NA non-coding downstream 189210 12789545 ~ 12805543 (+)
G1517150 NA other upstream 630806 11940062 ~ 11941897 (+)
G1517019 NA other upstream 928153 11642789 ~ 11643758 (+)
G1517015 NA other upstream 936932 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1479357 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1554822 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 233316 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 334319 12934654 ~ 12936278 (+)
G1517457 NA other downstream 337188 12937523 ~ 12942494 (+)
G1517545 NA other downstream 586766 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1834427 14434762 ~ 14436120 (+)

Expression


Co-expression Network