LOC110497019 (LOC106574742)


Basic Information

Item Value
gene id LOC110497019
gene name LOC106574742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12600823 ~ 12610380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951315.1
AACATTGCATTCTGGGACGTGTCCCCTGTTCGGGTTGTTGAAGTCAAGATGGCTGTAAACACCAAACAGAGACTAGAGCATGAAATAGGCCTTAAATGAAGTTCCTTATTCAATAAAATCGCCCATCACCGTCAAGAGCCTTGAGCAGTAACATAACGATTTGTTGAATATTTATCCAAACTGTGGAGAAAGTGTTAATTCATACAGTTACACAGGATCACGGGCAACTGCGGGAGAACGTCTCGTATGAATTCCGACGAGAGGGATTGTGAGTGTGCGCTACCACAGGCCGAGACATCCCCTGCAGGAGGATACGACAGAATACAAGAGGAGTCTGACATAGAAAACACGGAAGCAAGCCGAATGAAGCGAGCAGCCGCCAAGCATCTAATAGAGCGCTACTACCACCAGTTAACGGAGGGCTGTGGGAATGACTCCTGCTCGAACGCGTGGTGCTCCTCGTCCAGGGGCTCCCACTGCTTGGACAACAACGCAGCCGCCGTCAAGGCCCTGGAGCTGTACAAGAACAATGCCAAACTGTGCGACCCACACCCCTCCAAGAAAGGCACCACTATGAACCATTGTGTAAGGGACGACTTCAAAGATGTGAATTACCTAACAGAGGATAAAGTCTATGAGATCCTACACATctgtggagagaaggaggactACTCCCCTCTGATCCGGGTCATAGGACGGGTGTTCTCCAGTGCAGAGGGCCTGGTGCAGAGCTTCCGCCGGTCCAAACCACCCACCAAGGAGGAGCTCAAGTCCCTCCAGAGCAAGGACGAGGACAAAGACGAGGACGAGGAGGAAGCGGCCGCCTGCTCCGCTGCTGCTATGGAGGAGGACTCGCCCGGTTCCTCTTCCCGGTTAGACGGCGCTGCATCAGGGGACAATGATGTGGGGAAGCTGGGTCCTGATGAGGTTTCTGTGGACATCGACGCTGTCAGGAGGGTCTACCAGAGACTGCTGTCCAACGGTAATATCGAAACTGCCTTCCTCAACGCACTGGTCTACCTGTCGCCCAACGTGGAATGTGACCTGACGTACCACAACGTCTACTCCCGGGACCCCAACTACCTGAACTTGTTTGTGGTGGTGATGGAGAACAGTAACCTCCACAGCCCAGACTACCTGGAGATCGCTCTGCCCCAGTTCTGCAGGGCCATGAGCAAGCTGCCCCTACCCGCGCTGGCCAAGCTGGCCCGCCTGTGGTCTCACTACAGTGCTGAGCAGATCCACCGCATAATGGAGACCTTCCAGCAGCTCATCACCTACAAGGTGGTCAGCAATGAGTTCAACAGCCGCAACCTGGTGAACGACGACGATGCAGTGGTGGCAGCCACCAAGTGCTTGAAGATAGTCTACTATGCAAATGTCATGGGAGGGGAGGTGGACACGGAGCAcaacgaagaggaggacgaggagccCATCCCTGAGTCCAGCGAGTTGACGCTGCAGGAGctgctgggggaggagaggagaaacaagaAGGGCCCCCGGGTGGACCCCCTGGAGACTGAGCTTACCATCCGGACTTCCGACAGCCGGCGGCCCCTCATCCCCTTTGAGGAGTTTGTCAACGAGCCCCTGAATGAAGTCCTAGAGATGGACAAGGACTACACGTTCTTTAAAGTGGAGACGGAGAACAAGTTCTCCTTCATGACGTGTCCGTTCATCCTCAACGCCGTGACCAAGAACCTGGGCCTGTACTACGACAACCGCATCCGCATGTACAGCGAGCGACGCATCACAGTACTCTACAGCCTGGTGCAGGGACAACAGCTCAACCCCTACCTGAGGCTTAAAGTACGCCGAGACCACATCATCGATGATGCCCTCGTCAGGCTTGAGATGATCGCCATGGAGAATCCTGCAGACTTGAAGAAGCAGCTGTATGTGGAGTTTGAAGGAGAACAAGGTGTAGATGAAGGAGGGGTTTCCAAAGAGTTCTTTCAGCTCGTCGTGGAGGAGATCTTCAACCCAGATATTGGAATGTTTGCGTACGACGAGCGCACCAAGATGTTCTGGTTCAACCCGTCGTCGTTTGAAAACGAGGGTCAGTTCACGCTGATCGGCATCGTCCTTGGCCTGGCCATTTACAACAACTGCATCCTGGACGTTCACTTCCCCATGGTGGTCTACAGAAAGCTCATGGGCAAGAAAGGAACCTTCCGGGACCTCGCAGACTCCAATCCGGTTCTGTACCAGAGTCTGAAGGAGCTGTCAGAGTACGAGGGTAGTGTGGAGGAGGACATGATGATCACCTTCCAGATATCCCAGACAGACCTGTTCGGAAACCCCCTCATGTACGACTTAAGGGAAAATGGTGATCAAATTCCAGTCACCAACGAGAACAGAAAAGAGTTTGTAGCTCAGTATGCGGAGTACATGCTGAATAAGAGTGTTGAGAAGCAGTTCAAAGCCTTCAGAAGAGGTTTTCACATGGTCACCAACGAGTCCCCGCTGAAATATTTATTCCGGCCGGAGGAAATCGAGCTGCTCATCTGTGGAAGCAGGAACCTAGACTTTCAagcacttgaagaaacgacagaataTGATGGCGGCTACAGCAGAGATTCACGCATCATTAAGGAGTTCTGGGAGACGCTGCACTCGTTTGCTGAGGAGCAGAAGAGGCTGTTCCTGCAGTTCACCACGGGCACAGACAGAGCCCCTGTCGGAGGCCTGGGAAAGCTCAAGATGATCATCGCCAAGAACGGCCCCGACACAGACAGGTTACCCACATCTCACACCTGCTTCAACGTGCTGCTGCTCCCGGAGTACGACACCAAGgagaagctgagagagagactgctcAAAGCCATCCTCTATGCCAAAGGGTTTGGGATGCTCTGAGGCCATGGCTGCCACACTGAAAGAGGACTCCTTTTCAcaatctccctccttcccccataTCAGAAAAAATAAACGAAAGATGACCAACCAACACAAAATTGTTCAAGATTCGAGATGAGAAAAGCCGAAAATCAACACAATGGTTAATCTAAAGGTAGCGCACTCTAGTAGTGGAGTTTGTCTGTGCCAGCGTCCCGATCTCTTGGAGCAGCTTCATTGAACTTCATGTGATCTAAAGTACGTTTCAATTCCCACGTGTGAATGTGTTCTGAACGCATCCTTTATCTTATTTTATGTACAGGGGATTGTTTCCCCCTTAATATTTATTTTAAGGTTGAAATCGGTTATTTTGATCCTTGACTGGAATAACACCTTTTTTTTGTTGGGAAAGGGGAGGGCTGGGATTATTTAATAATCTGGATTGTGACAATGACGATGTAGAAACATTTTACCATTTGTGAGACAGAAAAGGCTGCATCCATTCATGCATTGCAGTCCTCTTTGCAGTCTGTTACTTTGCGATCGTTCGGTTGCATCGCTGCAGTCAGAAGCTGATGTGACGAGGGAAACCGTGTATATGAtgtcctaccccccccccccccccccccccccacacacacacacacacacacacacaccttccataTTATTTAGCCAATCGAACCAGACTCCATTTGTCATGGAAGTGTTTGGAGCTTGGAAAGTAATTTCATTCAGACAGCATCTTCAGAAAATGTTTACCTTGAGCATCTGTcctgaatgacaccctattccctatctagtgttctactgttgactagggcccattagggtgccatttgggacacatacattATTTTCGCCATTGGAGCACTGAGAGTAGACTGAAACTTTGTCGGAGCTGTTGTAAGTGCACTTAGACATTTTCAGAATTATAATTTTTTGGCTACAATTACATGATTGTTCTCAAAAAAAATAATTTCTGAAGTCTTCCTTTGTTGCCCGTGTCTAACCGGTATTATATTGTAATCCTCAGTACATTTATATCATCAGAATAGCATTTATTCTGGTTGTCTACACTTCTAGAAGACCAACCCCAAATATGTCCCAGGTTTATCTTCCTTTTAAAATCAAGGCATTTTGTACTAAATGAAATGTCTACAGACATTTGCCAAGTGTTACTGACAAATCTTTGCTCTCCAGTGATCCTGGAGCGATCTAGAAGATTTGTCTCTGTGTCGAAAATAACTTACGACAgaccttttttttaaatggttcaTTTTCGATTTGGGAAAGCTAGCTGTGAAAATTCCTTCAGCCCTGGCACAGTAAACAGTTGATTTGTTTCTTTGTCTTTTAGTTTCTGGACAATTCCATAGGGATGTAATCACTGCTTAGGAATGTCAATGGATCCTGAATCCTGATGCCGTCTTTCAGTCAGTAAGCAGTCAGCCAGCTCGCAGTAATGTCACTTTTCAACGGTGCTCAGGGCTGCTTGTGAAGAACCTGCCCCAACAAATACATTTCAGATATTGTGCCCTGAGCCTTCCCTTCCTCCATCGCTTCTTTGGGTTTCTGCTGTACCTCATTCATTTGTATCTCTGTTTTGTACTGCTGAAGTTGCTGCTCGCCTGTACACTTAAAAGGACTCCAGGGCCCAGAGAATGGACAACGTTCACCCTGATCTTGGAATTGAAGCAGTCAGTTTATAGGTTGGTTTGAGTTAACTGttaccttttaaaaaaaatgtaattgataaaaAGGCTTCAAATCAAGTGTTGTGAAAACATGCTAAATAAAAGTGACTGCTTTTTTCCAACTTGTA
>XM_036951316.1
GTGTCGTGGTTTGGGGAAGGGTGCATGTTTCTGTATCGTTGCAATAAAATGATTCCCAACTTATGGtttctggctagctagctatgtaactGGCATGTAAAATGAAGTAAAAGTGCAACATTCCTGCAGATTTCCAGAATACAAGAGGAGTCTGACATAGAAAACACGGAAGCAAGCCGAATGAAGCGAGCAGCCGCCAAGCATCTAATAGAGCGCTACTACCACCAGTTAACGGAGGGCTGTGGGAATGACTCCTGCTCGAACGCGTGGTGCTCCTCGTCCAGGGGCTCCCACTGCTTGGACAACAACGCAGCCGCCGTCAAGGCCCTGGAGCTGTACAAGAACAATGCCAAACTGTGCGACCCACACCCCTCCAAGAAAGGCACCACTATGAACCATTGTGTAAGGGACGACTTCAAAGATGTGAATTACCTAACAGAGGATAAAGTCTATGAGATCCTACACATctgtggagagaaggaggactACTCCCCTCTGATCCGGGTCATAGGACGGGTGTTCTCCAGTGCAGAGGGCCTGGTGCAGAGCTTCCGCCGGTCCAAACCACCCACCAAGGAGGAGCTCAAGTCCCTCCAGAGCAAGGACGAGGACAAAGACGAGGACGAGGAGGAAGCGGCCGCCTGCTCCGCTGCTGCTATGGAGGAGGACTCGCCCGGTTCCTCTTCCCGGTTAGACGGCGCTGCATCAGGGGACAATGATGTGGGGAAGCTGGGTCCTGATGAGGTTTCTGTGGACATCGACGCTGTCAGGAGGGTCTACCAGAGACTGCTGTCCAACGGTAATATCGAAACTGCCTTCCTCAACGCACTGGTCTACCTGTCGCCCAACGTGGAATGTGACCTGACGTACCACAACGTCTACTCCCGGGACCCCAACTACCTGAACTTGTTTGTGGTGGTGATGGAGAACAGTAACCTCCACAGCCCAGACTACCTGGAGATCGCTCTGCCCCAGTTCTGCAGGGCCATGAGCAAGCTGCCCCTACCCGCGCTGGCCAAGCTGGCCCGCCTGTGGTCTCACTACAGTGCTGAGCAGATCCACCGCATAATGGAGACCTTCCAGCAGCTCATCACCTACAAGGTGGTCAGCAATGAGTTCAACAGCCGCAACCTGGTGAACGACGACGATGCAGTGGTGGCAGCCACCAAGTGCTTGAAGATAGTCTACTATGCAAATGTCATGGGAGGGGAGGTGGACACGGAGCAcaacgaagaggaggacgaggagccCATCCCTGAGTCCAGCGAGTTGACGCTGCAGGAGctgctgggggaggagaggagaaacaagaAGGGCCCCCGGGTGGACCCCCTGGAGACTGAGCTTACCATCCGGACTTCCGACAGCCGGCGGCCCCTCATCCCCTTTGAGGAGTTTGTCAACGAGCCCCTGAATGAAGTCCTAGAGATGGACAAGGACTACACGTTCTTTAAAGTGGAGACGGAGAACAAGTTCTCCTTCATGACGTGTCCGTTCATCCTCAACGCCGTGACCAAGAACCTGGGCCTGTACTACGACAACCGCATCCGCATGTACAGCGAGCGACGCATCACAGTACTCTACAGCCTGGTGCAGGGACAACAGCTCAACCCCTACCTGAGGCTTAAAGTACGCCGAGACCACATCATCGATGATGCCCTCGTCAGGCTTGAGATGATCGCCATGGAGAATCCTGCAGACTTGAAGAAGCAGCTGTATGTGGAGTTTGAAGGAGAACAAGGTGTAGATGAAGGAGGGGTTTCCAAAGAGTTCTTTCAGCTCGTCGTGGAGGAGATCTTCAACCCAGATATTGGAATGTTTGCGTACGACGAGCGCACCAAGATGTTCTGGTTCAACCCGTCGTCGTTTGAAAACGAGGGTCAGTTCACGCTGATCGGCATCGTCCTTGGCCTGGCCATTTACAACAACTGCATCCTGGACGTTCACTTCCCCATGGTGGTCTACAGAAAGCTCATGGGCAAGAAAGGAACCTTCCGGGACCTCGCAGACTCCAATCCGGTTCTGTACCAGAGTCTGAAGGAGCTGTCAGAGTACGAGGGTAGTGTGGAGGAGGACATGATGATCACCTTCCAGATATCCCAGACAGACCTGTTCGGAAACCCCCTCATGTACGACTTAAGGGAAAATGGTGATCAAATTCCAGTCACCAACGAGAACAGAAAAGAGTTTGTAGCTCAGTATGCGGAGTACATGCTGAATAAGAGTGTTGAGAAGCAGTTCAAAGCCTTCAGAAGAGGTTTTCACATGGTCACCAACGAGTCCCCGCTGAAATATTTATTCCGGCCGGAGGAAATCGAGCTGCTCATCTGTGGAAGCAGGAACCTAGACTTTCAagcacttgaagaaacgacagaataTGATGGCGGCTACAGCAGAGATTCACGCATCATTAAGGAGTTCTGGGAGACGCTGCACTCGTTTGCTGAGGAGCAGAAGAGGCTGTTCCTGCAGTTCACCACGGGCACAGACAGAGCCCCTGTCGGAGGCCTGGGAAAGCTCAAGATGATCATCGCCAAGAACGGCCCCGACACAGACAGGTTACCCACATCTCACACCTGCTTCAACGTGCTGCTGCTCCCGGAGTACGACACCAAGgagaagctgagagagagactgctcAAAGCCATCCTCTATGCCAAAGGGTTTGGGATGCTCTGAGGCCATGGCTGCCACACTGAAAGAGGACTCCTTTTCAcaatctccctccttcccccataTCAGAAAAAATAAACGAAAGATGACCAACCAACACAAAATTGTTCAAGATTCGAGATGAGAAAAGCCGAAAATCAACACAATGGTTAATCTAAAGGTAGCGCACTCTAGTAGTGGAGTTTGTCTGTGCCAGCGTCCCGATCTCTTGGAGCAGCTTCATTGAACTTCATGTGATCTAAAGTACGTTTCAATTCCCACGTGTGAATGTGTTCTGAACGCATCCTTTATCTTATTTTATGTACAGGGGATTGTTTCCCCCTTAATATTTATTTTAAGGTTGAAATCGGTTATTTTGATCCTTGACTGGAATAACACCTTTTTTTTGTTGGGAAAGGGGAGGGCTGGGATTATTTAATAATCTGGATTGTGACAATGACGATGTAGAAACATTTTACCATTTGTGAGACAGAAAAGGCTGCATCCATTCATGCATTGCAGTCCTCTTTGCAGTCTGTTACTTTGCGATCGTTCGGTTGCATCGCTGCAGTCAGAAGCTGATGTGACGAGGGAAACCGTGTATATGAtgtcctaccccccccccccccccccccccccacacacacacacacacacacacacaccttccataTTATTTAGCCAATCGAACCAGACTCCATTTGTCATGGAAGTGTTTGGAGCTTGGAAAGTAATTTCATTCAGACAGCATCTTCAGAAAATGTTTACCTTGAGCATCTGTcctgaatgacaccctattccctatctagtgttctactgttgactagggcccattagggtgccatttgggacacatacattATTTTCGCCATTGGAGCACTGAGAGTAGACTGAAACTTTGTCGGAGCTGTTGTAAGTGCACTTAGACATTTTCAGAATTATAATTTTTTGGCTACAATTACATGATTGTTCTCAAAAAAAATAATTTCTGAAGTCTTCCTTTGTTGCCCGTGTCTAACCGGTATTATATTGTAATCCTCAGTACATTTATATCATCAGAATAGCATTTATTCTGGTTGTCTACACTTCTAGAAGACCAACCCCAAATATGTCCCAGGTTTATCTTCCTTTTAAAATCAAGGCATTTTGTACTAAATGAAATGTCTACAGACATTTGCCAAGTGTTACTGACAAATCTTTGCTCTCCAGTGATCCTGGAGCGATCTAGAAGATTTGTCTCTGTGTCGAAAATAACTTACGACAgaccttttttttaaatggttcaTTTTCGATTTGGGAAAGCTAGCTGTGAAAATTCCTTCAGCCCTGGCACAGTAAACAGTTGATTTGTTTCTTTGTCTTTTAGTTTCTGGACAATTCCATAGGGATGTAATCACTGCTTAGGAATGTCAATGGATCCTGAATCCTGATGCCGTCTTTCAGTCAGTAAGCAGTCAGCCAGCTCGCAGTAATGTCACTTTTCAACGGTGCTCAGGGCTGCTTGTGAAGAACCTGCCCCAACAAATACATTTCAGATATTGTGCCCTGAGCCTTCCCTTCCTCCATCGCTTCTTTGGGTTTCTGCTGTACCTCATTCATTTGTATCTCTGTTTTGTACTGCTGAAGTTGCTGCTCGCCTGTACACTTAAAAGGACTCCAGGGCCCAGAGAATGGACAACGTTCACCCTGATCTTGGAATTGAAGCAGTCAGTTTATAGGTTGGTTTGAGTTAACTGttaccttttaaaaaaaatgtaattgataaaaAGGCTTCAAATCAAGTGTTGTGAAAACATGCTAAATAAAAGTGACTGCTTTTTTCCAACTTGTA

Function

NR:

description
PREDICTED: ubiquitin-protein ligase E3A isoform X1

GO: NA

KEGG:

id description
K10587 UBE3A, E6AP; ubiquitin-protein ligase E3 A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951315.1 False 4666 mRNA 0.49 12 12600823 12610380
XM_036951316.1 True 4483 mRNA 0.49 12 12601164 12610380

Neighbor

gene id symbol gene type direction distance location
LOC110527213 LOC106575703 coding upstream 488 12571911 ~ 12600335 (+)
LOC110527211 ipo5 coding upstream 31398 12552573 ~ 12569425 (+)
LOC110527217 LOC106575668 coding upstream 48051 12549655 ~ 12552772 (+)
LOC110512988 LOC106575668 coding upstream 55037 12542264 ~ 12545786 (+)
LOC110527226 LOC106575709 coding upstream 132924 12460009 ~ 12467899 (+)
LOC110497015 tmem131 coding downstream 11945 12622325 ~ 12653756 (+)
LOC110527205 pcid2 coding downstream 139543 12749923 ~ 12829550 (+)
LOC110495518 LOC106574650 coding downstream 264097 12874477 ~ 12879111 (+)
LOC110495515 creg1 coding downstream 272131 12882511 ~ 12885631 (+)
cd3z cd3z coding downstream 275715 12886095 ~ 12898735 (+)
G1517330 NA non-coding upstream 75273 12525247 ~ 12525550 (+)
G1517326 NA non-coding upstream 90955 12509611 ~ 12509868 (+)
G1517323 NA non-coding upstream 93455 12507103 ~ 12507368 (+)
G1517321 NA non-coding upstream 131332 12469024 ~ 12469491 (+)
G1517318 NA non-coding upstream 161416 12439194 ~ 12439407 (+)
G1517353 NA non-coding downstream 107702 12718082 ~ 12718713 (+)
G1517386 NA non-coding downstream 108395 12718775 ~ 12718999 (+)
G1517408 NA non-coding downstream 153581 12763961 ~ 12765207 (+)
G1517409 NA non-coding downstream 163832 12774212 ~ 12785975 (+)
G1517410 NA non-coding downstream 179165 12789545 ~ 12805543 (+)
G1517150 NA other upstream 659718 11940062 ~ 11941897 (+)
G1517019 NA other upstream 957065 11642789 ~ 11643758 (+)
G1517015 NA other upstream 965844 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1508269 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1583734 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 223271 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 324274 12934654 ~ 12936278 (+)
G1517457 NA other downstream 327143 12937523 ~ 12942494 (+)
G1517545 NA other downstream 576721 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1824382 14434762 ~ 14436120 (+)

Expression


Co-expression Network