LOC110527205 (pcid2)


Basic Information

Item Value
gene id LOC110527205
gene name pcid2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12749923 ~ 12829550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951353.1
GACCTTTATTTTGAAGGCTGAAGGAATACATTGACCCGGAAGTGATTTGTGTAGCTACAGCTCAACAACGCGAATACATTTTAAACAGAAATTTAACCACAACAGGTTCACATCCCTGGCTGCAATGGCGCACATAACAATCAACCAGTATCTCCAACAGGTGTATGAGGCCATTGATAATCATGAGGGGAGTTTTTGTGCAGAACTGCTGTCATTCAAACACCCACATGTGGCTAACCCACGTCTCCAGCTCGCCAGTCCAGAGGAGAAGTGCCAACAGGTGCTGGAAGTCCCGTACGATGAGATGGTTGCAGCACACTTGAGGTGCACCTATGCAGTGTCCAACCACGACTTTGTTGAGGCGTACAAATGTCAGACGTTGGTGGTCCAGTCATTCTTGAGGGCCTTCCAATCTCACAAAGAGGAGAACTGGGCCTTGCCAGTGATGTTCGCTGTTACGCTGGACCTGCGGATATTTGCCAACAATGCAGAGCAGCAGCTCCTGAGGAAGGGAAAAGGCAAACTGGGAGACATGCTGGAGAAAGCTGCTGAGCAACTGATGGGCTGTTTCAGAGTGTGTGCCAGCGACAATCGGGCTGGGATTGACGACTCCAAGAAGTGGGGAATGTTGTTTCTCATCAATCAGCTCTTCAAGATCTACTTCAAGATCAACAAGCTACACCTGTGTAAGCCACTGATCCGGGCCATCGACAGCTCCAACCTGAAGGATGATTACAGTATGGCCCAGAGAGTCACCTACAAATACTACGTAGGCCGCAAGGCCATGTTCGACAGCGACTACAAACCAGCCGAGGAGTACCTGTCCTTCTCCTTCCAGCACTGCCACCGCTCCAGCCAGAGGAACAAACGCATGATCCTCATCTACCTACTGCCTGTCAAGATGTTGCTGGGTCACATGCCTAATCACCAGCTGCTCAGGAAGTACGACCTCATGCAGTTTGCCGACGTCACGAAAGCTGTGAGTGAGGGCAACCTGCTGCTGTTGAACGAGGCCTTGGCCAAGCACGAGACCTTCTTCATCCGCTGTGGCATCTTCCTCATCCTCGAGAAGCTCAAGATCATCACCTACCGGAACCTCTTCAAGAAAGTGTACCAGCTGCTGAAGACTCACCAGTTGCCCCTAGATGCCTTCCTGGTAGCTCTGAAAATGATGCAGGTGGAAGAGGTGGACATTGATGAGGTGCAGTGTATCCTGGCCAACCTAATCTGTGAGgGTCACATCAAGGGCTACATCTCTCACCAGCACCAGAAACTGGTCGTCAGCAAGGCCAATCCATTCCCCCTGCTGTCATCATCTTCCTAATCTACGTATCCCAGAATCCCCTTCACCCAGGAACTGCTCCCAGAAATATATTTCCTTATTATTTAGGTTGCATTTTATTTTGTCATATTTTTAACATTTTGAATaaaagtttttgttgttgttgta
>XM_036951354.1
AAGTGATTTGTGTAGCTACAGCTCAACAACGCGAATACATTTTAAACAGAAATTTAACCACAACAGGTAGCTATGGATACATTGGAATTATGCCattagGTTCACATCCCTGGCTGCAATGGCGCACATAACAATCAACCAGTATCTCCAACAGGTGTATGAGGCCATTGATAATCATGAGGGGAGTTTTTGTGCAGAACTGCTGTCATTCAAACACCCACATGTGGCTAACCCACGTCTCCAGCTCGCCAGTCCAGAGGAGAAGTGCCAACAGGTGCTGGAAGTCCCGTACGATGAGATGGTTGCAGCACACTTGAGGTGCACCTATGCAGTGTCCAACCACGACTTTGTTGAGGCGTACAAATGTCAGACGTTGGTGGTCCAGTCATTCTTGAGGGCCTTCCAATCTCACAAAGAGGAGAACTGGGCCTTGCCAGTGATGTTCGCTGTTACGCTGGACCTGCGGATATTTGCCAACAATGCAGAGCAGCAGCTCCTGAGGAAGGGAAAAGGCAAACTGGGAGACATGCTGGAGAAAGCTGCTGAGCAACTGATGGGCTGTTTCAGAGTGTGTGCCAGCGACAATCGGGCTGGGATTGACGACTCCAAGAAGTGGGGAATGTTGTTTCTCATCAATCAGCTCTTCAAGATCTACTTCAAGATCAACAAGCTACACCTGTGTAAGCCACTGATCCGGGCCATCGACAGCTCCAACCTGAAGGATGATTACAGTATGGCCCAGAGAGTCACCTACAAATACTACGTAGGCCGCAAGGCCATGTTCGACAGCGACTACAAACCAGCCGAGGAGTACCTGTCCTTCTCCTTCCAGCACTGCCACCGCTCCAGCCAGAGGAACAAACGCATGATCCTCATCTACCTACTGCCTGTCAAGATGTTGCTGGGTCACATGCCTAATCACCAGCTGCTCAGGAAGTACGACCTCATGCAGTTTGCCGACGTCACGAAAGCTGTGAGTGAGGGCAACCTGCTGCTGTTGAACGAGGCCTTGGCCAAGCACGAGACCTTCTTCATCCGCTGTGGCATCTTCCTCATCCTCGAGAAGCTCAAGATCATCACCTACCGGAACCTCTTCAAGAAAGTGTACCAGCTGCTGAAGACTCACCAGTTGCCCCTAGATGCCTTCCTGGTAGCTCTGAAAATGATGCAGGTGGAAGAGGTGGACATTGATGAGGTGCAGTGTATCCTGGCCAACCTAATCTGTGAGgGTCACATCAAGGGCTACATCTCTCACCAGCACCAGAAACTGGTCGTCAGCAAGGCCAATCCATTCCCCCTGCTGTCATCATCTTCCTAATCTACGTATCCCAGAATCCCCTTCACCCAGGAACTGCTCCCAGAAATATATTTCCTTATTATTTAGGTTGCATTTTATTTTGTCATATTTTTAACATTTTGAATaaaagtttttgttgttgttgta
>XM_036951355.1
TACATTTTAAACAGAAATTTAACCACAACAGGTAGCTATGGATACATTGGAATTATGCCattaggttagtacagtggttcccaaccaacCAGGGGTTCACATCCCTGGCTGCAATGGCGCACATAACAATCAACCAGTATCTCCAACAGGTGTATGAGGCCATTGATAATCATGAGGGGAGTTTTTGTGCAGAACTGCTGTCATTCAAACACCCACATGTGGCTAACCCACGTCTCCAGCTCGCCAGTCCAGAGGAGAAGTGCCAACAGGTGCTGGAAGTCCCGTACGATGAGATGGTTGCAGCACACTTGAGGTGCACCTATGCAGTGTCCAACCACGACTTTGTTGAGGCGTACAAATGTCAGACGTTGGTGGTCCAGTCATTCTTGAGGGCCTTCCAATCTCACAAAGAGGAGAACTGGGCCTTGCCAGTGATGTTCGCTGTTACGCTGGACCTGCGGATATTTGCCAACAATGCAGAGCAGCAGCTCCTGAGGAAGGGAAAAGGCAAACTGGGAGACATGCTGGAGAAAGCTGCTGAGCAACTGATGGGCTGTTTCAGAGTGTGTGCCAGCGACAATCGGGCTGGGATTGACGACTCCAAGAAGTGGGGAATGTTGTTTCTCATCAATCAGCTCTTCAAGATCTACTTCAAGATCAACAAGCTACACCTGTGTAAGCCACTGATCCGGGCCATCGACAGCTCCAACCTGAAGGATGATTACAGTATGGCCCAGAGAGTCACCTACAAATACTACGTAGGCCGCAAGGCCATGTTCGACAGCGACTACAAACCAGCCGAGGAGTACCTGTCCTTCTCCTTCCAGCACTGCCACCGCTCCAGCCAGAGGAACAAACGCATGATCCTCATCTACCTACTGCCTGTCAAGATGTTGCTGGGTCACATGCCTAATCACCAGCTGCTCAGGAAGTACGACCTCATGCAGTTTGCCGACGTCACGAAAGCTGTGAGTGAGGGCAACCTGCTGCTGTTGAACGAGGCCTTGGCCAAGCACGAGACCTTCTTCATCCGCTGTGGCATCTTCCTCATCCTCGAGAAGCTCAAGATCATCACCTACCGGAACCTCTTCAAGAAAGTGTACCAGCTGCTGAAGACTCACCAGTTGCCCCTAGATGCCTTCCTGGTAGCTCTGAAAATGATGCAGGTGGAAGAGGTGGACATTGATGAGGTGCAGTGTATCCTGGCCAACCTAATCTGTGAGgGTCACATCAAGGGCTACATCTCTCACCAGCACCAGAAACTGGTCGTCAGCAAGGCCAATCCATTCCCCCTGCTGTCATCATCTTCCTAATCTACGTATCCCAGAATCCCCTTCACCCAGGAACTGCTCCCAGAAATATATTTCCTTATTATTTAGGTTGCATTTTATTTTGTCATATTTTTAACATTTTGAATaaaagtttttgttgttgttgta
>XM_036951356.1
TTATGCCattaggttagtacagtggttcccaaccaacCAGGGGTAGGTACTAGGGAGCCCTGGCTTATCTACAGGGgatacttgagaagactcatgagactaTAGGCTTTTACTGGTTCACATCCCTGGCTGCAATGGCGCACATAACAATCAACCAGTATCTCCAACAGGTGTATGAGGCCATTGATAATCATGAGGGGAGTTTTTGTGCAGAACTGCTGTCATTCAAACACCCACATGTGGCTAACCCACGTCTCCAGCTCGCCAGTCCAGAGGAGAAGTGCCAACAGGTGCTGGAAGTCCCGTACGATGAGATGGTTGCAGCACACTTGAGGTGCACCTATGCAGTGTCCAACCACGACTTTGTTGAGGCGTACAAATGTCAGACGTTGGTGGTCCAGTCATTCTTGAGGGCCTTCCAATCTCACAAAGAGGAGAACTGGGCCTTGCCAGTGATGTTCGCTGTTACGCTGGACCTGCGGATATTTGCCAACAATGCAGAGCAGCAGCTCCTGAGGAAGGGAAAAGGCAAACTGGGAGACATGCTGGAGAAAGCTGCTGAGCAACTGATGGGCTGTTTCAGAGTGTGTGCCAGCGACAATCGGGCTGGGATTGACGACTCCAAGAAGTGGGGAATGTTGTTTCTCATCAATCAGCTCTTCAAGATCTACTTCAAGATCAACAAGCTACACCTGTGTAAGCCACTGATCCGGGCCATCGACAGCTCCAACCTGAAGGATGATTACAGTATGGCCCAGAGAGTCACCTACAAATACTACGTAGGCCGCAAGGCCATGTTCGACAGCGACTACAAACCAGCCGAGGAGTACCTGTCCTTCTCCTTCCAGCACTGCCACCGCTCCAGCCAGAGGAACAAACGCATGATCCTCATCTACCTACTGCCTGTCAAGATGTTGCTGGGTCACATGCCTAATCACCAGCTGCTCAGGAAGTACGACCTCATGCAGTTTGCCGACGTCACGAAAGCTGTGAGTGAGGGCAACCTGCTGCTGTTGAACGAGGCCTTGGCCAAGCACGAGACCTTCTTCATCCGCTGTGGCATCTTCCTCATCCTCGAGAAGCTCAAGATCATCACCTACCGGAACCTCTTCAAGAAAGTGTACCAGCTGCTGAAGACTCACCAGTTGCCCCTAGATGCCTTCCTGGTAGCTCTGAAAATGATGCAGGTGGAAGAGGTGGACATTGATGAGGTGCAGTGTATCCTGGCCAACCTAATCTGTGAGgGTCACATCAAGGGCTACATCTCTCACCAGCACCAGAAACTGGTCGTCAGCAAGGCCAATCCATTCCCCCTGCTGTCATCATCTTCCTAATCTACGTATCCCAGAATCCCCTTCACCCAGGAACTGCTCCCAGAAATATATTTCCTTATTATTTAGGTTGCATTTTATTTTGTCATATTTTTAACATTTTGAATaaaagtttttgttgttgttgta

Function

symbol description
pcid2 Predicted to enable RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process; poly(A)+ mRNA export from nucleus; and posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to be part of transcription export complex 2. Orthologous to human PCID2 (PCI domain containing 2).

NR:

description
PCI domain-containing protein 2

GO: NA

KEGG:

id description
K23801 PCID2, THP1; nuclear mRNA export protein PCID2/THP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951353.1 False 1450 mRNA 0.49 13 12749923 12829550
XM_036951354.1 False 1444 mRNA 0.49 13 12749962 12829550
XM_036951355.1 False 1439 mRNA 0.49 13 12749997 12829550
XM_036951356.1 True 1460 mRNA 0.50 13 12750049 12829550

Neighbor

gene id symbol gene type direction distance location
LOC110497015 tmem131 coding upstream 96167 12622325 ~ 12653756 (+)
LOC110497019 LOC106574742 coding upstream 139543 12600823 ~ 12610380 (+)
LOC110527213 LOC106575703 coding upstream 149588 12571911 ~ 12600335 (+)
LOC110527211 ipo5 coding upstream 180498 12552573 ~ 12569425 (+)
LOC110527217 LOC106575668 coding upstream 197151 12549655 ~ 12552772 (+)
LOC110495518 LOC106574650 coding downstream 44927 12874477 ~ 12879111 (+)
LOC110495515 creg1 coding downstream 52961 12882511 ~ 12885631 (+)
cd3z cd3z coding downstream 56545 12886095 ~ 12898735 (+)
gp91phox cybb coding downstream 245514 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 273079 13102629 ~ 13132209 (+)
G1517386 NA non-coding upstream 30924 12718775 ~ 12718999 (+)
G1517353 NA non-coding upstream 31210 12718082 ~ 12718713 (+)
G1517330 NA non-coding upstream 224373 12525247 ~ 12525550 (+)
G1517326 NA non-coding upstream 240055 12509611 ~ 12509868 (+)
G1517323 NA non-coding upstream 242555 12507103 ~ 12507368 (+)
G1517417 LOC106575738 non-coding downstream 11833 12841383 ~ 12854300 (+)
G1517422 NA non-coding downstream 26964 12856514 ~ 12877270 (+)
G1517420 LOC106574661 non-coding downstream 34980 12864530 ~ 12865350 (+)
G1517418 NA non-coding downstream 51186 12880736 ~ 12881992 (+)
G1517416 NA non-coding downstream 69260 12898810 ~ 12902980 (+)
G1517150 NA other upstream 808818 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1106165 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1114944 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1657369 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1732834 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 4101 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 105104 12934654 ~ 12936278 (+)
G1517457 NA other downstream 107973 12937523 ~ 12942494 (+)
G1517545 NA other downstream 357551 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1605212 14434762 ~ 14436120 (+)

Expression


Co-expression Network