LOC110495518 (LOC106574650)


Basic Information

Item Value
gene id LOC110495518
gene name LOC106574650
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12874477 ~ 12879111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951326.1
AAAATAGTGAAGTGCATTATGGGTATTCGAATTTCATCAATGGAAGTAGACAAAGTAACATTTATCGATACTATCAGGTTTAAATAGATAAGGCACAGGTATCAGAGGAAATCATAACCAGCTGACCATCCATCAATATTGAAAATGGATGGGTCAGAGAAAACAGAAGTTGCGAGGGCAAAGTCATTCTGGGTACAGGTGGATGTGGAAGAAACATTTGATGAGCTATATGAATATCTGACACACCTGAAGCATGCCATCAAGACCTGCACTGCTACAGACAGAGaATATGTCCAGGGGATGAATATGATTACCTTATTGGATTCCGGGCTGATTGTGACACCGGCAACTACAGGCCCAGCTACAACTACAGCCCCAGCTACAACTACAGCCCCTGCCACTGGGAATGAGTCTTTTGTGGAGGTGGTTATTGGTGCAGAAATCCTCACAGTTTCAGTCCCTGACATTGACGACCCTCAGACTCCACTGCCCCCCCAACAGACAGAGCCCGtatcccctccctcacccctccgtTACGATGGCTCCATCATCCCCCTGTCGCCCCCCTACCCCAACAGAGAGGACCTCATGACTCCCCTGCTGCCCCCCTACCAGTTCCATACCTGCAGCCAGGCCTGTGTGCCCCACCTGCCCCCGTCCGCACACCACTTCCGGGGCCACAACCCTCTCAGGATCCCACTACTCTGCTCCTTCCAGCGGCAGTGTGCTCCCACCCCACCTCTCACTACTGGGATTGAGACCGATTGTGATGGGACTGAACCAGACTCTAAGGGGGAGGGCTCTGAGAATTCTGAGGGTGCAGAGTTGGACTCTGAGGTCACGGCACGGGGTGTTGTTTACAAGGCTCCCTGTGGGCTGAGTCTCTGCACCCCAGGGGAGGTGCTATGTTTTCTGGTTGCCACAGAGAGTCACGGCATTCTGCAGGTGGACGACTTCACCTTTGACCCCCTGGTGCAGTTGGAGTGTCTGCGGCCACCGCAGTGGCGCCCACCCGGGCTGGCTGAGAGGGACCTGAGCCGGGGGTCAGAGCCAACGCCAGTGGAGTTATGCCTGCAGGAGGAAGGAGTGCGGCCGGAGGATTTCCGCTACAGGAAGGAGCGTTGGCCTCACGGCTGTTTCCTCAGTTCGGGCCCGCTGTTCACCACCTGCTGCGACTGCACTGACGGCTGTGGTGATGCGGAGAGCTGCGCCTGCGCTTGTCTGACCCCAGGCGGCAAACACTACTCCCACCAGAGGCTGTCTGAGCATGTGCCCAAAGGGCTGTACGAATGCGGTCCTTGGTGTGGGTGTGACCGTGGTATGTGCCAGAACCGTGTGGTTCAGCGGGGTCTGCGTGTCCGGTTGCAGGTCTTCCCCACCGGAAACAAAGGATGGGGGGTGCGTTGCCGTGACGACCTGGACAGGGGCACGTTCGTGTGCACATACGCAGGTGTAGTTCTCAGGGCAGGACTGGACTCCGACGAGCCCCTCCCACCCAAGCGCCAGAAGGCGGACCTTCCCTCCGACGACGAGGTGGAGGTGGTAGATGAGTGGCTGGCACCGGCAGGGGAGGGACGAGCGCCTGCAGAGACCCTGGAGCCCTCGCCCCCCTCCTCACCTCCTGACGGGCTTCATGTGCCCGTTATCCAGAGGCCCGGGGTGGAGCTTTCTCCACAGATCCAAGCTGTGTTGGTGGGAAACTCCCTGCCAGTTCAACCTCTCACAGGCATGGAGGTTGAGGAGGGTGTGGAGCAAGAGAATGGGGTACAGAAGCCTCAGCTGAATTCCCAAGCACACATGAAAGAAGTGGATGTGAAGCTGTCTGTGTCCACAAGCACAAGCCCCAAAAAACTGGGCCCAAAGCAGAACCCTATGGAGCACCTGTATTACCTAGATGCCACGAAGGAGGGGAACGTGGGAAGGTTCATAAATCACAGCTGCGACCCCAACCTATTTGTTCAGAACGTCTTCACTGACTCTCATGATCCAAACTTCCCCGTCATCGCCTTCTTCACCAGCAAAGTGGTGAAGGCGGGGACTGAGTTGACCTGGAACTACTCCCACAGCCCTGACAGTGACCTGGAACAGAAAGTGACATGTCAGTGTGGCTGTGAAGGCTGTCAGGGACTGCTGGCCTGAACCTTGAGATGAACACAGAAACAAAATACTCCTTTATAGCCTGCTTCTACACCCATTACATAGTCAGTTTGTGCTGTAAACAAATCTGCCTTCAGACCAGGCCACAATGACCCCAAGATGTGTATGATGGTAAAAAaaaagcaaaaaaagaaatgtcctttcactg
>XM_036951325.1
GTGAAGTGCATTATGGGTATTCGAATTTCATCAATGGAAGTAGACAAAGTAACATTTATCGATACTATCAGGTTTAAATAGATAAGGCAGTAGGTACATTAGCTTATGTTTTGAACGAACTGTAAATTGGTGTCGACACTTGTATAATAATGCTTTTTGCAAGCAACTTCCTGAAATCAATGCATGCAGCATAGCAAAGATAGCTAGAGATCTAGCTAACGTTGTTACTTCCAACATCCTTACTGGTGTACGTTAGCTGGTAGTACTAGCTAGGCCATCGACGTTGGATACCAACAATATATATTTAACTAGGTTGGTCTTTGGTAGGCTATATATCCGGCATAATATTGACTATGTGCTTAGCCAATTGCACATTTTCTTAGCAGGTATCAGAGGAAATCATAACCAGCTGACCATCCATCAATATTGAAAATGGATGGGTCAGAGAAAACAGAAGTTGCGAGGGCAAAGTCATTCTGGGTACAGGTGGATGTGGAAGAAACATTTGATGAGCTATATGAATATCTGACACACCTGAAGCATGCCATCAAGACCTGCACTGCTACAGACAGAGaATATGTCCAGGGGATGAATATGATTACCTTATTGGATTCCGGGCTGATTGTGACACCGGCAACTACAGGCCCAGCTACAACTACAGCCCCAGCTACAACTACAGCCCCTGCCACTGGGAATGAGTCTTTTGTGGAGGTGGTTATTGGTGCAGAAATCCTCACAGTTTCAGTCCCTGACATTGACGACCCTCAGACTCCACTGCCCCCCCAACAGACAGAGCCCGtatcccctccctcacccctccgtTACGATGGCTCCATCATCCCCCTGTCGCCCCCCTACCCCAACAGAGAGGACCTCATGACTCCCCTGCTGCCCCCCTACCAGTTCCATACCTGCAGCCAGGCCTGTGTGCCCCACCTGCCCCCGTCCGCACACCACTTCCGGGGCCACAACCCTCTCAGGATCCCACTACTCTGCTCCTTCCAGCGGCAGTGTGCTCCCACCCCACCTCTCACTACTGGGATTGAGACCGATTGTGATGGGACTGAACCAGACTCTAAGGGGGAGGGCTCTGAGAATTCTGAGGGTGCAGAGTTGGACTCTGAGGTCACGGCACGGGGTGTTGTTTACAAGGCTCCCTGTGGGCTGAGTCTCTGCACCCCAGGGGAGGTGCTATGTTTTCTGGTTGCCACAGAGAGTCACGGCATTCTGCAGGTGGACGACTTCACCTTTGACCCCCTGGTGCAGTTGGAGTGTCTGCGGCCACCGCAGTGGCGCCCACCCGGGCTGGCTGAGAGGGACCTGAGCCGGGGGTCAGAGCCAACGCCAGTGGAGTTATGCCTGCAGGAGGAAGGAGTGCGGCCGGAGGATTTCCGCTACAGGAAGGAGCGTTGGCCTCACGGCTGTTTCCTCAGTTCGGGCCCGCTGTTCACCACCTGCTGCGACTGCACTGACGGCTGTGGTGATGCGGAGAGCTGCGCCTGCGCTTGTCTGACCCCAGGCGGCAAACACTACTCCCACCAGAGGCTGTCTGAGCATGTGCCCAAAGGGCTGTACGAATGCGGTCCTTGGTGTGGGTGTGACCGTGGTATGTGCCAGAACCGTGTGGTTCAGCGGGGTCTGCGTGTCCGGTTGCAGGTCTTCCCCACCGGAAACAAAGGATGGGGGGTGCGTTGCCGTGACGACCTGGACAGGGGCACGTTCGTGTGCACATACGCAGGTGTAGTTCTCAGGGCAGGACTGGACTCCGACGAGCCCCTCCCACCCAAGCGCCAGAAGGCGGACCTTCCCTCCGACGACGAGGTGGAGGTGGTAGATGAGTGGCTGGCACCGGCAGGGGAGGGACGAGCGCCTGCAGAGACCCTGGAGCCCTCGCCCCCCTCCTCACCTCCTGACGGGCTTCATGTGCCCGTTATCCAGAGGCCCGGGGTGGAGCTTTCTCCACAGATCCAAGCTGTGTTGGTGGGAAACTCCCTGCCAGTTCAACCTCTCACAGGCATGGAGGTTGAGGAGGGTGTGGAGCAAGAGAATGGGGTACAGAAGCCTCAGCTGAATTCCCAAGCACACATGAAAGAAGTGGATGTGAAGCTGTCTGTGTCCACAAGCACAAGCCCCAAAAAACTGGGCCCAAAGCAGAACCCTATGGAGCACCTGTATTACCTAGATGCCACGAAGGAGGGGAACGTGGGAAGGTTCATAAATCACAGCTGCGACCCCAACCTATTTGTTCAGAACGTCTTCACTGACTCTCATGATCCAAACTTCCCCGTCATCGCCTTCTTCACCAGCAAAGTGGTGAAGGCGGGGACTGAGTTGACCTGGAACTACTCCCACAGCCCTGACAGTGACCTGGAACAGAAAGTGACATGTCAGTGTGGCTGTGAAGGCTGTCAGGGACTGCTGGCCTGAACCTTGAGATGAACACAGAAACAAAATACTCCTTTATAGCCTGCTTCTACACCCATTACATAGTCAGTTTGTGCTGTAAACAAATCTGCCTTCAGACCAGGCCACAATGACCCCAAGATGTGTATGATGGTAAAAAaaaagcaaaaaaagaaatgtcctttcactg

Function

NR:

description
histone-lysine N-methyltransferase SETDB2-like

GO: NA

KEGG:

id description
K18494 SETDB2; [histone H3]-lysine9 N-trimethyltransferase SETDB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951326.1 False 2305 mRNA 0.55 10 12874477 12879111
XM_036951325.1 True 2593 mRNA 0.53 9 12874483 12879111

Neighbor

gene id symbol gene type direction distance location
LOC110527205 pcid2 coding upstream 44927 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 220721 12622325 ~ 12653756 (+)
LOC110497019 LOC106574742 coding upstream 264097 12600823 ~ 12610380 (+)
LOC110527213 LOC106575703 coding upstream 274142 12571911 ~ 12600335 (+)
LOC110527211 ipo5 coding upstream 305052 12552573 ~ 12569425 (+)
LOC110495515 creg1 coding downstream 3400 12882511 ~ 12885631 (+)
cd3z cd3z coding downstream 6984 12886095 ~ 12898735 (+)
gp91phox cybb coding downstream 195953 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 223518 13102629 ~ 13132209 (+)
LOC118941099 LOC106574646 coding downstream 254006 13133117 ~ 13134843 (+)
G1517420 LOC106574661 non-coding upstream 9127 12864530 ~ 12865350 (+)
G1517417 LOC106575738 non-coding upstream 20177 12841383 ~ 12854300 (+)
G1517410 NA non-coding upstream 68934 12789545 ~ 12805543 (+)
G1517409 NA non-coding upstream 88502 12774212 ~ 12785975 (+)
G1517408 NA non-coding upstream 109270 12763961 ~ 12765207 (+)
G1517418 NA non-coding downstream 1625 12880736 ~ 12881992 (+)
G1517416 NA non-coding downstream 19699 12898810 ~ 12902980 (+)
G1517452 NA non-coding downstream 45288 12924399 ~ 12924636 (+)
G1517454 NA non-coding downstream 49813 12928924 ~ 12929968 (+)
G1517458 NA non-coding downstream 68260 12947371 ~ 12956518 (+)
G1517414 LOC106575752 other upstream 2314 12833651 ~ 12872163 (+)
G1517150 NA other upstream 933372 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1230719 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1239498 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1781923 10978682 ~ 11092554 (+)
G1517456 LOC106575727 other downstream 55543 12934654 ~ 12936278 (+)
G1517457 NA other downstream 58412 12937523 ~ 12942494 (+)
G1517545 NA other downstream 307990 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1555651 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1619675 14498786 ~ 14499137 (+)

Expression


Co-expression Network