LOC110495515 (creg1)


Basic Information

Item Value
gene id LOC110495515
gene name creg1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12882511 ~ 12885631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570809.2
TCCCTGATCACGTGACCGCAGCGTACAAAACACTCCTCGTTCCTTTCTTTCTACTTGTGTTTACGACGTTCTTATACCTCAGTGGTTTATGGAGGAGATGGAAGTCAACATGAACACATTGCTGGCAGCAGGGCTTCTACTGCTTTTCGCTATGCCCGGAGAACTTTACAGAATCCCTCCGCACGAGGAAGTCGCCAGGATGGCTAGATTCGTCGCCAACCAGTGCAACTGGGCTTCCATGGCCACAATATCGACCCATGAGCCAGTGCAAGGACAACCCTTCTCCAATGCGTTCTCTACCAGTGACGGACCAGTTGGGTCTGGGACTGGGGTGCCCTACATGTACCTCACCACTATGGAGATCTCTGTCCAGGATTTAAAGGTGAACCCCCAGGCTTCCTTGTCCATGTCCCTGGCCCAGACAGACTTCTGTAAGAACCAAGGATACGACCCTCAGGATCCCCTTTGTGCCCACATCATCTTCTCTGGCTCTGTGCTGGAGATTAACGGTACAGAGGCCACCTTTGCCAAGAAAGCCCTGTTCAGTCGCCACCCTGAGATGGTCGACTGGCCCACCGACCACAACTGGTTCTTTGCCAAGATGAACATCACCAAGGTGTGGGTTCTGGACTACTTTGGAGGGGTAAAGACAGTCACACCAGAAGACTACTTCAAGGCTACACCCTACAAGAGACACCACTGAGAGGACACCACAGCCAGTTTGATGAGGAGGAATCCTAAGTGTTTCATAGTGAGCTAGAGGGCAGGGGAGGATGGACCCAATATTTGGAATAATGAagactttttttaaattttcttcCCCCAACTAAATTTGCTCAATAATGGCCATTTGCTGAATTCCAAATAATGTAATATCTACTGAGGTGTCTGTGGGGGAAGGGGATGGTTTGGAATTCAGCGTTTCTCTCATATGCTTCCAATTGAAATGTATGGCTATAGGGATGGATCTCTGTGTGTAATTGTGGGTTATACCCTTTAGGAAGCTCTATTGTTGTGCAATATAATTATTTTAAGAAGGACTGCCTTCGTTGTTAGGGAGTTCATTTGGCTTTTGTAGTTATAAGAAAGAATTGATGGCATCTCTCCCATGTGAGCAGTCATATGCAGTGTTGTATTTTTACCACAAGAGGGGGAGGTGTGATGCTTGGTACAGACAGAAGCTGGCTTGAAGGGTAGTTTGACCAAATTACATATGTTGTAGTAGTATGGAGGTGATTTTTGTTTGTAATGCCATTTGGGGTATGCCAACAAGGGTACTACCACTCTATTGTTTTTGGACAATGCCACCAATAAGCTGTAGCAAGGTAAACAAACCCACATTCTGGGTGGCAGACGCTAGCTCCATAGAATACCTTTTTAATGTAGGTATCCATCAAATTAGAATAagttgtaatttgggtgaaccaTTTCTTTAAAGCAGAGGAAAAACATGACGCTCTTGTTGAATTAAATTGTGTGttatagttagttagttagttagttagtggtaTGTGTTGATTATGAAGCATTGCACTTGTCATCTACAAATCCATTTCTCATTTTACAAGTAAACCTTTTTTAGTCTTCATTTAATCAGTTTGGGTCtaattcatttcaattcaataTCATGCCAAAATATAACTAAATGTGACATGcatttaaaacaaaatatattcaGTTTTACAACATCACTTCTGATTTTTGCTGGAATTTAAATACATTCTTTGTATATTTTCTACGTGAAATAAGTATTTATATGCTCCTCTATTCTCTATTGATGCTGACACGGTACATATTTTTGTAAACAAAATGATGGATGATTTGTCTAAATAAAGCTATATTTTGTAT

Function

symbol description
creg1 Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blood. Orthologous to human CREG1 (cellular repressor of E1A stimulated genes 1).

NR:

description
protein CREG1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570809.2 True 1848 mRNA 0.42 4 12882511 12885631

Neighbor

gene id symbol gene type direction distance location
LOC110495518 LOC106574650 coding upstream 3400 12874477 ~ 12879111 (+)
LOC110527205 pcid2 coding upstream 52961 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 228755 12622325 ~ 12653756 (+)
LOC110497019 LOC106574742 coding upstream 272131 12600823 ~ 12610380 (+)
LOC110527213 LOC106575703 coding upstream 282176 12571911 ~ 12600335 (+)
cd3z cd3z coding downstream 464 12886095 ~ 12898735 (+)
gp91phox cybb coding downstream 189433 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 216998 13102629 ~ 13132209 (+)
LOC118941099 LOC106574646 coding downstream 247486 13133117 ~ 13134843 (+)
LOC118941100 NA coding downstream 504398 13390029 ~ 13392754 (+)
G1517418 NA non-coding upstream 519 12880736 ~ 12881992 (+)
G1517422 NA non-coding upstream 5241 12856514 ~ 12877270 (+)
G1517420 LOC106574661 non-coding upstream 17161 12864530 ~ 12865350 (+)
G1517417 LOC106575738 non-coding upstream 28211 12841383 ~ 12854300 (+)
G1517410 NA non-coding upstream 76968 12789545 ~ 12805543 (+)
G1517416 NA non-coding downstream 13179 12898810 ~ 12902980 (+)
G1517452 NA non-coding downstream 38768 12924399 ~ 12924636 (+)
G1517454 NA non-coding downstream 43293 12928924 ~ 12929968 (+)
G1517458 NA non-coding downstream 61740 12947371 ~ 12956518 (+)
G1517459 LOC106575727 non-coding downstream 62676 12948307 ~ 12948739 (+)
G1517414 LOC106575752 other upstream 10348 12833651 ~ 12872163 (+)
G1517150 NA other upstream 941406 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1238753 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1247532 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1789957 10978682 ~ 11092554 (+)
G1517456 LOC106575727 other downstream 49023 12934654 ~ 12936278 (+)
G1517457 NA other downstream 51892 12937523 ~ 12942494 (+)
G1517545 NA other downstream 301470 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1549131 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1613155 14498786 ~ 14499137 (+)

Expression


Co-expression Network