LOC110495507 (LOC106574647)


Basic Information

Item Value
gene id LOC110495507
gene name LOC106574647
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13102629 ~ 13132209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570802.2
GGCGCATGGAGAGGTCCGAGGCCTGTAGAACCACCTGCAGCTCATTCATTTACGGCCAGTGAGGAGAGAGCGACTGCGCTGTGAAAGACTGCGGGTGGATCAACTGAACCAACAAAGCCCAGTGGAGAATCACAGCAACGCAGCCCCGCTGAAAACCCAGCACCCCATTTTACAGTAGAATGGCATCAAGAAGAATGGAGACCAAACCAGTGATAACCTGCCTCAAAACGCTCCTCGTCGTCTATTCCTTCGTGTTTTGGaTCACGGGGGCGATCCTCTTGGCTGTGGGACTATGGGGAAAGTTTATGCTGGGTGCGTACATATCTATCATCGCTGACAGCTCCACCAACGCTCCTTATGTTCTCATCGGCACCGGAACATGCATCATCGTGTTCGGACTGTTTGGATGCTTCGCTACCTGCCGCGGGAGCCCATGGATGCTCAAGCTGTATGCCATGTTCCTGTCCCTGATCTTCCTGGCTGAGCTTGTGGCTGGCATCTCCGGCTTTGTCTTTCGTCATGAGATAAAGGGAACCTTCCAGAGGACCTTCAGTGAGGCAGTGAAGAACTACAATTCCCAGGACGAGAGGAGCCTGGCTGTGGACAATGTGCAGCGCAGTttgAAATGCTGTGGTGTGTTGAACTACACCAGCTGGTTGTCCAGTATCTGGTTCCCTAACAACGGCATCCCACCCAGCTGCTGTGCCAGCATCTCTGACTGTAACGCTTCTGACCTGCACAATGTCACCATAGCCCCCAGCAAGGTCCACCagcagGGCTGTTATGAGCTAGTGACTGACTTCATTGAGACTAACATGGGGATCATTGCTGGAGTGACATTTGGAATAGCGGTCTCACAAtcaATTGGTATGCTGTTGGCATGCTGTCTGTCGCGGCTTATCACTGCCAACCAATATGAGATGGTGTAGCAGTGAGGTGCAGGGAGACCAGGAGGAGGAGAGCGTACACGTCACCTTGGAACCTGGGGAGGAACACACCCAAACGCTGGCACAGTCCATTCTTACTTTTCCACACCTTATCTTTCTTACTTtatcgctctctttttctctctttcatctctttgAACACATTCCTTAATATGACACCATGCCATGATTAAAAATGTTACCTTTCAAGACCTTTATTCTTCTAAAATGAATGGTTGTCGATTAGCACCTGCCTCAGCCATATGCTCTGATCCAGGCATGCCATGCCTAATTCAAACACTACCAATCTTCACTTACACAAGTTGACAATATTCCTAAGAAATTACCTTGATGCAACATAGCAGTGGAACGAGGAGCTATCTTCCCCAGTCTAAATTTCCTGGAAATAATTTTTGGGATGCCATCAGAATTTCCAATATGAGGTCTTTGAAAGAAACTTGAGCTCACTCAGAAGtgactgagtctctctctctctctctctcacacacacacacgcacacacacagtgtctgcTTTTTGCTGCTACATGGACTACAGTAAACCTACATCCTGCTTCTAATGACTATCACTCTAAATGACCTTGTGCAAGTTGCTCTCTGTGGATGTGTATTTGTGATGCGTTTAGATCCTCTGTATTCAGTCCTGTACTTGGTGATCTCTGCCACTCCCTCCCCTGTGCCTTCTGTCTGTCAGTTGGTTAGTCataatgttgttttgttgttgtaatatttcatttcattttaaaAGTCTTAACTAGTCATGTGTGTTTCTATAACAGTAGTCTGAGACACAGCCATTTTTCTGGTTTAAACCCCAGTTTTGGTGTTCAAATGTTTTtacacattcaccttctgcttgAGATCCCACTCTATCTGACTATCCTTGTCCATTCTCCAGCACAtccagttctctctctgtctctctccaccgcCACACCCCAGTACATTCGGTTCCAACACCCTCCTCCCTGACTGACGCATATCGCTGCACAAACTAGAGTTTCACTGAGTCAGCACTGCTTTCTGATGATGAGAGAAGACTATTCTACTTCCTGTCTTTTGTTGTTGCCGTTTGCTTCTCACTATATGGGattggtagacagagagagagccaacTGGGCAcagactggttgaatcaatgttgtttccacgtcatttgtGGAATAGACAGTGAATTAATGTCTGTCcagtgatagaaagagagagagattcattcTCAGTGGCAGGACTTGAGGTGTTCGAGCTCGATTCGGTCTGTCATTGCTCTGGCTTGGAACAATCAAATGAAATACCACTTTTTGAAGATTTGCCACTTTTGTGTATTACTTAAATGGAGAATCAGTAATATGACAGCAACCTCTTAGGTGGGAATGACTGTAGGAATGACTGTAAGAATACTACGCTTTAGCGAGGGCCTGGGGGTAGAATGGAATGGGGCAGACCACCGAGGTCACTGACACTGTTACTGGTTCCATTCAACTGTCATGTGAGCACAGAAAGCTGGTTCCAAGATTCTATTTCTCTAATTACTAGGATTCTTTtaggtttttgttgttgtttgttttgggGTTTTGAGCATTCTGAAGTAGCTCTGTGTTTTCGGGGATCACTATACAACCAATGTACATGATCAATTTATCTCTCAATCCAAAATTGGACAGATGAAATAAGACtgtataaaaaaagaaagaaaacgtTTTAAAATGCATCACCAGCTAGCATGCCAACAAAtgtatgttgatattgtgaaCAATTGTGATCTTGAATATCTGAATAAAATGGTCATTACATCGTTTCA

Function

NR:

description
tetraspanin-7-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06571 TSPAN7, TM4SF2, MXS1, CD231; tetraspanin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570802.2 True 2744 mRNA 0.45 8 13102629 13132209

Neighbor

gene id symbol gene type direction distance location
gp91phox cybb coding upstream 21810 13075064 ~ 13080819 (+)
cd3z cd3z coding upstream 203894 12886095 ~ 12898735 (+)
LOC110495515 creg1 coding upstream 216998 12882511 ~ 12885631 (+)
LOC110495518 LOC106574650 coding upstream 223518 12874477 ~ 12879111 (+)
LOC110527205 pcid2 coding upstream 273079 12749923 ~ 12829550 (+)
LOC118941099 LOC106574646 coding downstream 908 13133117 ~ 13134843 (+)
LOC118941100 NA coding downstream 257820 13390029 ~ 13392754 (+)
LOC118941043 NA coding downstream 317948 13450157 ~ 13451678 (+)
LOC110495498 LOC106574751 coding downstream 342865 13475074 ~ 13503268 (+)
LOC110495496 NA coding downstream 384133 13516342 ~ 13518076 (+)
G1517519 NA non-coding upstream 11093 13090469 ~ 13091536 (+)
G1517511 NA non-coding upstream 41969 13060368 ~ 13060660 (+)
G1517506 NA non-coding upstream 50551 13051227 ~ 13052078 (+)
G1517501 NA non-coding upstream 55248 13043700 ~ 13047381 (+)
G1517489 NA non-coding upstream 78065 13023050 ~ 13024564 (+)
G1517528 NA non-coding downstream 4736 13136945 ~ 13137243 (+)
G1517536 NA non-coding downstream 25524 13157733 ~ 13158166 (+)
G1517539 NA non-coding downstream 33445 13165654 ~ 13165876 (+)
G1517540 NA non-coding downstream 34028 13166237 ~ 13166465 (+)
G1517543 NA non-coding downstream 44907 13177116 ~ 13182157 (+)
G1517457 NA other upstream 160135 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 166351 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 230466 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1161524 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1458871 11642789 ~ 11643758 (+)
G1517545 NA other downstream 54892 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1302553 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1366577 14498786 ~ 14499137 (+)
LOC110495481 LOC106574739 other downstream 1424117 14556326 ~ 14558589 (+)
G1519733 NA other downstream 1681773 14813982 ~ 14814886 (+)

Expression


Co-expression Network