LOC118941099 (LOC106574646)


Basic Information

Item Value
gene id LOC118941099
gene name LOC106574646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13133117 ~ 13134843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951879.1
TCTGATTGGCTGAAAACGCAGTTACCGCTTGTGGGCTGACGCAAGTACGCCACTCTGCATCTCACCGTCCTCCTGCTGGTGCTGAGGATTTATTAAGCTAGCAAACTGCAATCGGTCGCTTTGCTCACAACAAACTGTCAAATGAAGACTTTATGCCTTCCACAGAAGTTTAACAAGTGAAGTGGTTATTCGGAAAAATACCAGGGACAATAACATCACGGTCGTTCATCCTGTTACTTTAGCCTGAGGGGGAAACATTCGACATTCGAGAGACAGATCCGGGAACGCCCTTAGAAAAAAGACACTTGTTAGTCAATTAGTGAGTAACGTTAGGTAGTACAGTCTCACAAGGCAGGCAAGACGTTTGAGAAGTCGGGACGTTTCCTCGGACTGAGTAAGCTTTTGCAGCAGCTAAATTTGTAATTGTAATCCGATAAAGagcattagctagttagcttgctaagGTTGATTTCAGACTGACAGAGTAAAACTGCATTATCATCGGTGACGCGAGGTAACTAGATTGTCTGCACGCGGTCAGGTTTCTCGCAAAAATGATGCACATTTCGGATTCGTACAATCAAAAGAATTCATTGTTCAATGCAATGAACAGATTTATTGGTGCTGTGAATAATATGGATCAGACGGTGATGGTTCCTAGTCTGCTAAGAGACGTGCCTCTAGACGAGGAAGAAGAGGTGAAAACGATATCACCGATTAGGACCGCCAGCAATGGGTCAACCACCTATTTCCAGGACGGGGACATGTACAATTACTATGTGCTATTAAAATCGATCAGGAATGACATCGAATGGGGGGTCCTACAAGCCGATGACAGGCGGAAAGAAAAAATGGGGGTGACCGCGTTGGACATATCCAGAATAGAATCCGATGATGATGATTTGGAAAAACAATTTCATTATCATTTGACCGGACTACACACGGTTCTGTCCAAGCTTACCCGGAAAGCAAACACCCTCACGAACAGGTACAATCAGGAGATTGGAATAAGGGGCTGTGGACTGTGACTACTAGAAAGTTGAGTGTGTCAGACGATAACATCAAAAGTCATTGGTGAACagtggaatggggggggggggggggtctcctaGTGATATCGTTTATATTTATTCCCACAGTGGCAATAAATAAATGTAACCTACTAGACGTTTCATATGCATTGTTCAACATTTCCCATCTACTGTTTGAATGATTGTTTGCACTAAGTCTTGTGTATTAACAGATTATTGTATGGATGGTCTGTCCACgttaacattttttgttgttgattgggCAACATTGCATAATGCCTACTGACAGTGATTTCATATGTTATGGTAGCAACGAGTCATTGCCATACCATTGACTAAATCATATGCTTAGTCTGTGAACTGGAATCAAATGATAATTATTTTGAATTTGAGTGATTCCAAGAGATTAACACCAactgtaaacattatttaagcaCCATTTTATTTTTCTATAGAAATGACGGCTCAGCTATTAAACATCTGCTTATTGTTA

Function

NR:

description
LOW QUALITY PROTEIN: mid1-interacting protein 1-B-like

GO:

id name namespace
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951879.1 True 1524 mRNA 0.42 2 13133117 13134843

Neighbor

gene id symbol gene type direction distance location
LOC110495507 LOC106574647 coding upstream 908 13102629 ~ 13132209 (+)
gp91phox cybb coding upstream 52298 13075064 ~ 13080819 (+)
cd3z cd3z coding upstream 234382 12886095 ~ 12898735 (+)
LOC110495515 creg1 coding upstream 247486 12882511 ~ 12885631 (+)
LOC110495518 LOC106574650 coding upstream 254006 12874477 ~ 12879111 (+)
LOC118941100 NA coding downstream 255186 13390029 ~ 13392754 (+)
LOC118941043 NA coding downstream 315314 13450157 ~ 13451678 (+)
LOC110495498 LOC106574751 coding downstream 340231 13475074 ~ 13503268 (+)
LOC110495496 NA coding downstream 381499 13516342 ~ 13518076 (+)
trnaa-ugc-135 NA coding downstream 382119 13516962 ~ 13517036 (+)
G1517519 NA non-coding upstream 41581 13090469 ~ 13091536 (+)
G1517511 NA non-coding upstream 72457 13060368 ~ 13060660 (+)
G1517506 NA non-coding upstream 81039 13051227 ~ 13052078 (+)
G1517501 NA non-coding upstream 85736 13043700 ~ 13047381 (+)
G1517489 NA non-coding upstream 108553 13023050 ~ 13024564 (+)
G1517528 NA non-coding downstream 2102 13136945 ~ 13137243 (+)
G1517536 NA non-coding downstream 22890 13157733 ~ 13158166 (+)
G1517539 NA non-coding downstream 30811 13165654 ~ 13165876 (+)
G1517540 NA non-coding downstream 31394 13166237 ~ 13166465 (+)
G1517543 NA non-coding downstream 42273 13177116 ~ 13182157 (+)
G1517457 NA other upstream 190623 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 196839 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 260954 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1192012 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1489359 11642789 ~ 11643758 (+)
G1517545 NA other downstream 52258 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1299919 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1363943 14498786 ~ 14499137 (+)
LOC110495481 LOC106574739 other downstream 1421483 14556326 ~ 14558589 (+)
G1519733 NA other downstream 1679139 14813982 ~ 14814886 (+)

Expression


Co-expression Network