LOC110497006 (LOC106574795)


Basic Information

Item Value
gene id LOC110497006
gene name LOC106574795
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13520158 ~ 13556352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951884.1
TTGTCGTACAGCCAGACACCTTCCCAACCTTGCGAGGAGATGTTGACGTCATTCCTGTCATTACTGCAGAGCCAGTTGAGGAGGTCACAGAGATGGTCCCGCCAGAAACTACTGACTCTGTGACTGAAGATGCCGACACCGACGTCACCTCAGAGACCGACGAGACAATACAGGAGATCGGAGAGGACGCCACTACCGAAGCTGCCTTTGACGTCAACTCCGAAACAGCAGTTGAAGTCATTGCTGAGACTAGCGATGAGGCTGTCCAGGAGGTTAATATGGCTGCTGTTGAGGAAACATCCGATGCTACCTCAGATGACACTGTGGAGATCACACCTGAACCTATTGTCACTGTCATCCACGAGCCCATTAATGAGGTAATTGGGAAAATGTATGAGGAAGTAATCCCAGATACCACATACAATACAGTGGAGGAGACAGAAGAGGCCGCTGCAGAGGTCCCACCAGAAGCTGCCATTGTGATCCCTATAGAGGTCCCATCAGAGGCTGCCATTGAGATCCCTGCAGAGGTCCCTTCAGAAGCTGCCATCGATATGCCTGTTGGGTCCACAGACAAGGATATCCCAGAACCTGAAATAACATTTATTCCAGAAACTTCTTTGGAGGACATTTCTGAAACCACTTCTGAAGCGCCTTCGGAAGCTGCCACAGAAATCACTTCAGATACAATAGACAAGGAGATCACAGAGGGTACTATAGAAATTACTTCAGATACCATAGACAAGGAGATCACAGAGGGTACTACAGAAATCACTTCAGATACCATAGACAAGGAGATCACAGAGGGTACTATAGAAATTACTTCAGATACCATAGACAAGGAGATCACAGAGGGTACTACAGAAATCACTTCAGATACCATAGACAAGGAGATCACAGAGGGTACTACAGAAATCACTTCAGATTCCATAGACAAGGAGATCACAGAGGGTACTACAGAAATCACTTCAGACACCATAGACAAGGAGATCACAGAGGGTGACACAGAAATCACTTCAGATATCATAGACAAAGAGATCACAGAGGGTGACACAGAAATCACTTCAGACACCATAGATGAGGAGATTAAAGAGGCTGCCATAGAGGTCACTTCAGATACCACAGATGAGGAGATCACAGAGGCTGCGGTAGAAGAAAACATCACTTTGGAGACCACTTCAGACATTGCTACCAAAGCAACGTCAGAAGATACTACAGATGAGGATATTCCAGAGGATGCAGCAGAATTAACTCCAGACATTTCTCCAGAGGACACCTCTGAGACTACAGATGAGGAAGCTGCAGCAGAGTTGATTCCAAAAGTTTCTCCAGAGGGCACTTCAGAGCCTGAAGCTGCCATGGAGATCCCTTCAGAGGGTTCAGATGGAGACGTTCATGAGCCCCCTGTGGAGGTCACCTCAGAGGATTCAGATGGAGACATTCAGGAGCTCCCTGTGGAGGTCACCTCAGAGGCTACCGTAAATGTTGCCCCAGAAGACACTGAAGAGGAGACCCCTGAGATTTTAGAGGAAGTTATCTCAGACGCCACAACGCATTTTATTCTCGAGGCTACTGAGGAGATCACTCCAGAGGCTGTACTAGAGGATACTTTGGCCACTACTACTAATGAAGTGGTAATAGAGATTGGTCCTGAGGAAGAAGTCACTCCAGAAACTTCCGTAAATGCCGTTCCAGAGGATGTAACAGGGATCACTGAAGAAGCAACAATAAAGGCTGAAGTCACTCCTGAGGCTGAAGTAGAGATGAAGGAAGTTATGGTGGAGGTCACCTCAGAAGCCACTTTGGAGGTCACTCCCGAGGTTGAAGTAGAGGTAACTCCAGAATATGTAGTGGAGGAACCTCCAGAGGCTGAGGAGATTACAGAAGAAACTGCAGTAGAGGACAATCCCGAGGTGGAGATAGAGGTAACTCCAGAGTCTACTGAAGAAGTTCCTGAGGAAGCAGGAGAGGTTCCTTTGGAGACTGCAGTGGAAGACGCTCCAGAGGCTGTAGAAGAAATCCCCCCAGAGACTGTGGAGATAACGCTGGAAGCTGCTGAAGAATACTCAACAGAAACTGTAGAAGAAATAGTTTCAGTGACTCCAGAAGAGATAACACCAGAACCTTCAGACAAAGAAATTCCAGAAACTTCAGAGGAGGAAATTCCAGAACCATCAGAAGAGGAAACTCCAGAGGCTTCAGAAGGGGTCCCATCTGAGGCAGTAGACGAGATCATTCCAGAAGCTACAGAAGAGGCTTCCAAAAAGATAATTACAGAAACTACTGAAGAGGCTTCCAAAGAGATCATTCTAGAGCGTTCAGAAGCTGCAGCAGAGATAACCACAGAGGCTGCAGGTGAGTCCACTCCAGAGGCAACACAGGAGGCTGCTGTGGAGATTACTCATGAGGTCATCACTGAAACTGGAATTTTGACGGACACAGAGGAGAACAATAATGGCGATCGTTATAGGGATGCAGAGGAGAACAATAATGGTGGTCGTTATAGGGTCACAGAAGAACCAGAAGAAACAAATGATGACTTCCTGGGGATCCAAGATATCATAACAGAGGTGGAAAACACGCTGGGCAATGAGATTGAGGACATCATGACGAGGCCGTCCACACCCATGAAGGAGCAGGTGGTAGAACTCAGCATCCAGCTGAAGGGAGAGAACTACAACGACGCCCTGAGAGACACCTCTAGCTTCTACTACCAGCGCGTGGCCAAACATTTCACCCATAAGATTGAAGATGCATTTGAAAGGTTACCAGGATTCAAGaaggtctttgtagttgaattcaGGCCTCAGAAGGACCTCCAAAGGGGTATGTTGTCCGTGGTAGTCCACTACGCAGTGACTCTGGAAGTGGACGGGGCAGGCATCAGTAACGAGACCATGGACTACATCAACCTCCAGTCCAACGTGGTGGAGAAGTCTTACCGTGACGCCGTTGAACGCCCCACTGTGGTCTACACCATAACAGACTTCCGAAACTACATCACTGAAGCCCTGCACAAGGAGAACTTCATGAGCAACACAACTCTGGATGTAGACCCCGACTCACTGCAGCAAGAGCAAGTTGATAACTTGTTTCTGGGAGGGAgacccaccaccaaaccagaAGAGTCCAATGACATGATGGACAATGTTCTGGCTGCTGAGAAACCACCAGATGCTCCTGGCCAAGACTTGGATGTCAGCGACATCTTCCTGAAGAAGGATGATTTCCTGTTTCCTGTGGACCCTTTGAAAGGCTCCGGGAGCGTCGTGGCCAGTGAAAATGATGTGTTCGTTCTGGATGAAACCACCTTGCCACCCAGCACCACTGCTGTCCCTGCAGAGAATAATGGAAATATTGAAGAAGAGGGATTTCTTCTCAGCAACACTCAGCAAGACTCTGATACTCCcggtggggatggtgtggtcGGTGCTGGAggctcctctacctcctccccttcacaaccacagaccacagagGCCCCGGTCCCGGCACCTCCCAGAGTAAACCCAGATTTGGATGTTGGCTCTGGCTCCGGCTTCTCTGGGGATGACCAAGGGGCTGACGTCCTCCCATGGTTTCCCGTGACaactgaggagacagaccacatagaggaggaggaggattctGTGGTGTGGGAGGTGCATTTACCAGATCCAGAAGTGGAaccgaaggagggagagaagaaggaggaggagaagggggaagagatcACCGAATCTGTCCTGACTGAATCTCCAGAGGATATGGGTCCTTTTGAGTCCCATCCAGAATCTGCCCCAGTTGAAGAAGAGCCACAACATCCTTTCTTGGACAGACTGCCTGTGACCCAAGACATTAGTACCCGACCTGACTACACGACCACCGCTGAAGCCCCTGTGTTCTGGACCGCAGAGACCCTGACCGTGGAGCTCTCCATACAGACGCTGGAGGCCTCTGGGATTTATGACGATTATTACCCAAGCGAACCATTCACCATCATAGCACCAGTCACTGATTATCCCTATCCTCAGTTTTACACCACTGAGGCCCTGGTGTTGGAAGGGCCAGCAACTGAGACCCATGGTTCTGTTGAGGAGCTGTCggagccaaccagtccaatagaggTTGAACTCCCCACAGTCACAGAGTCACCTACCTTCATAGACATGGAGCTGTTCACAGTCAAGGAGTCCATCTTCGATATGATCACCTCCGAACCACCAGAGATCGAAGCCTTCACCGACAGACCTTTACCCTTGGTGCCCGATCCTGAGGAtgaagatggagaggtggagatcTTGGAGGAACAGGGGGCGGAGGTCGCAGGGCCCTTGGCCACAGTACTCCCAGCCCTTGACATCTCAGAGGAGGACCTAGCTGAAGATCAAATCTTTGTTGTGGCTGCAGGTACAGCAGCCCCGGAAGTCATAGAGTCTCATAGCATCTTATCCCCCGAGAAGGAATCTCCCTTCTCTCGTAtatctgactctgtaccagaagAGGAGGAAGCCACACACCATCCAGCCACCACAGAAATAGCAccatatggtgacattgaaatcTCTGAGACACCTGAAATTGCCCCAACAATCCTACCTCCATTCTTCCAGCCCACATTCAGACCCACAGAAAACCTGCTTGAGGCAGCAGAAGAGTCAGATGTTAGCATTGAAGAAGGAGATGTTAGCATGGCGCTAGCACCCCCTTCCCCAGCTCACGACACATACGAACTAGAAGTCGGCACTTCAATCCAAGCGGTTGGAGACCCCGCACCAGACTCCCCCATGTCGGAAATTGACCTCACCTTCAACGTGTATGACGGAACGGGTCACATGGACGGGGACAGCAGCGGGTACTCCAGCATCGCCCATGGATCAGACGTGGGCAGCATCGCCATGGCAAAGAGCCCTGGCAAGGAtctgatggtgttcttcagcctGAGGGTGACCAACATGATGTTCTCTGAGGATCTCTTCAACAAGAGTTCCACAGAGTACAAAGCGCTGGAGCAGAGGTTCCTCGAACTGCTCGTCCCTTACTTGCAGTCCAACCTCAGCAACTTCCAGAACCTGGAGATCCTGAATTTCCGTAACGGCAGCATCGTGGTGAACAGCAGGATGAAGTTCGGGAAGCCCGTCTCTCGGGGGGTCACCAACACTGTCTACCTTATCCTAGAGGACTTCGCTAACTCAGCCTTCCAAACCATGAAcctctccatagacaaatactCACTGGATGTGGAATCAGGCAACCAGGCAAACCCCTGCAAGTTCCAAGCGTGTAATGAGTATTCGATGTGCACGGTGAACCGCTGGTCCGGGgaggcggagtgtgtgtgtgacgcgGGTTACTTCAGCGTGGACGGACTGCCGTGCCAGAGTATCTGTGACCTGCAGGAGGACTTCTGTCTCAACGATGGGAAGTGTGATGTCATCCCCGGCAAGGGAGCCATCTGCAGATGTCGTGTAGGAGAGAATTGGTGGTACCGCGGGGAACACTGTGAGGAGTATGTGTCAGAACCTCTGGTGGTGGGCATCGCCATAGCGTCGGTGGCTGGATTCCTATTGGTGGCCTCAGGGGCAATCTTCTTCCTGGCCAGGACTCTGAGGGACGGTTATGACAAAGAGGATTCAGAGGATCCTCTACGAGATCGGGACAGTGTGCCATCCTTAGAGAGAGCCACCAAGTTCAACCCCATGTATGAGAGTGATGTGGCCACGGCAGAGTACTACAGACGGTACGAAGATGACGTGCTGCACCACAGTACGGGCAGCGTAGACCCCTCTGTGGACTTCTGCAGTGACGAGATACTCCAAATCTACGACAACTCCGAGCTCACCAGAGAGcaaATTCAGGACCGCCTAAGGATAATTGAGCTGTGTGCCAAAGACCGTCAGTTTGCAGACTTTGTACGGCAGCATCAAGTAGCGCTGGACAGAAGAGCGAGCTCTGAAACATAGGAATGCTGGAGAGCCAGCTGATCACTGTGAACCTCAAGAAACATGCCTTTGTCTTTGACTTGAGAAAGAGGAAAGTGTCTTCTGTTGCCATGGTGCTTCTGATGGACTCTGCAGGATGACCAGATGAAGAGGATGGATATTGAAAGAACATCTTCTCTATGAGGCGTGATGTGTTGTGCTGTTGCAACGTGTCACTGACTCTGTTTCTATGACCTGATCTTTTTCTAAAGGGGGAGTGCACTGTAAATACTTTGATTTTTGTTGTTTCATTTTTTTCTTCGGTTATCACAGCCATCACCTTATCCTATGAGCTAGCCTCCTGCTCAGCTAGCCATCAAACATCTAGATACAGTTACTGTCAAAAAGGTTCGCTGCATTTGCACCTCTTACTTGCACAAATCTGTGAACAAACAACAAACAGACTTCAATTGTTGTGTCCTTAGTTAGTTTAGACATGTGGGTCCCTTCCTGCTCTGTTCTCCCTAATCATGGTCTTCTTCAGTGCCTTCACTTGGTTTCAGTTAGCATTGTGTGGTGCTGTGTCCTGAAACGTAAAGCGGCTGCTGGCAGGACCCTTGAAGTTCACTGGATGTCACTGGAAGGCTACTGTCCTGCATGGAAACTAACTACTGGTTTAATCCAttttgtttccacataatttcaaccCCCAAATTCAATGTGATGAAGTTGAACTGTTTGGAGTAGAAAATCAACGTAAGAGAATTTCAGATTTTGTTCACCTAACTTTTAACATAAATCcaatgacattttttgttgatttcacattgaattcaagttagttgacaactcaaccaaatgtaaatcaaaactataCGTAGAACTGacttctgtgcccagtgggtactgACTGGATGGCACAGGCTAACGCTATATAACCTCCACTGAAATGATCTAATATCCTGGTTGCTGTAATTACTTGAACATGATTTTGGCAAAAAGTTGTAGATAATCAATTGTGTAGACATAAATTCATTGTGTATTTAACTGTTGGAATGAATATAGATTGATATACTGGAATTGTGATTGTTAGTAACCCCTTTTGGCCATAGCCAATAGCCCATGAAGACATGTTTCTCTGAGTTTTCTCATTTCTCAAATCTGACATCTGCTGCTTTGGGTTAGTCCACGTATCCATGACGATCCCAAGCAACCATGACAATCCCAAGCCTTTGTATATATCAGGAGTCGACTGTTTTCATCCACATGTTTTGATAAACCAAATGTCCTCGACCCATTgaaaaaggggttaaatgtgTACGTTGTCTCTGTTGATGTGTTTTCTATGTTTTCTCATAGTTCAGAGATTAACAAGAGAATGGTGTTATGATCTGTGTTGTGTATGTTAGACTTACTGGTTGAAAGCCCACAGACACTTTTTGTAATAAAATGGCAATATTTTTTACAATATTATAATGCATATGTCATTTTATCAAGCAAATCTATATTTATCAAGCCTTGATATcattgtacactgagtataccaaacattaggaacaccttcctaatattgagttgctgtACAGTATTGATTTGTTCTGGGATGAAAGTAA

Function

NR:

description
interphotoreceptor matrix proteoglycan 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951884.1 True 7513 mRNA 0.48 15 13520158 13556352

Neighbor

gene id symbol gene type direction distance location
LOC110495496 NA coding upstream 2082 13516342 ~ 13518076 (+)
trnaa-ugc-135 NA coding upstream 3122 13516962 ~ 13517036 (+)
LOC110495498 LOC106574751 coding upstream 16890 13475074 ~ 13503268 (+)
LOC118941043 NA coding upstream 68480 13450157 ~ 13451678 (+)
LOC118941100 NA coding upstream 127404 13390029 ~ 13392754 (+)
LOC110495495 LOC106574775 coding downstream 36628 13592980 ~ 13622818 (+)
LOC118941229 NA coding downstream 254884 13811236 ~ 13811288 (+)
LOC110495487 LOC106574771 coding downstream 327604 13883956 ~ 13969189 (+)
LOC110495485 LOC106575653 coding downstream 418758 13975110 ~ 13979887 (+)
LOC110495483 LOC106575569 coding downstream 530706 14087058 ~ 14485956 (+)
G1518374 NA non-coding upstream 1094 13467280 ~ 13519064 (+)
G1518359 NA non-coding upstream 79328 13440560 ~ 13440830 (+)
G1518292 NA non-coding upstream 217347 13302593 ~ 13302811 (+)
G1517551 NA non-coding upstream 301497 13218447 ~ 13218661 (+)
G1518414 NA non-coding downstream 3471 13559823 ~ 13560040 (+)
G1518416 NA non-coding downstream 5245 13561597 ~ 13561803 (+)
G1518422 NA non-coding downstream 12323 13568675 ~ 13568877 (+)
G1518427 NA non-coding downstream 21744 13578096 ~ 13578352 (+)
G1518434 NA non-coding downstream 31643 13587995 ~ 13588199 (+)
G1517545 NA other upstream 332078 13187101 ~ 13188080 (+)
G1517457 NA other upstream 577664 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 583880 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 647995 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1579053 11940062 ~ 11941897 (+)
G1519096 NA other downstream 878410 14434762 ~ 14436120 (+)
G1519538 NA other downstream 942434 14498786 ~ 14499137 (+)
LOC110495481 LOC106574739 other downstream 999974 14556326 ~ 14558589 (+)
G1519733 NA other downstream 1257630 14813982 ~ 14814886 (+)
il8r il8r other downstream 1341904 14898154 ~ 14901354 (+)

Expression


Co-expression Network