LOC110495487 (LOC106574771)


Basic Information

Item Value
gene id LOC110495487
gene name LOC106574771
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13883956 ~ 13969189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570760.2
CTCTACTGCACCACACTGTCCTTCTATCCAGTCCTCTATCACAGCAGCGTCTCattccccctctttctgtctctctctctcccaggcacGCTCCCTCTCTCCGTCAGCATTGGCGGGAGAGTGattcacccccctcctcctcccccatcgctCTAACTGGATTGTACAGACAGAGGCAAGCTGAGGACacaggagaggagaaaaagggCTCGATCAGGGAAGGAAGACGTGGAAACACTACACACTGGATAACATTTCCTCTCTGCTAGCAGGGGGCTACAGAGCAACACAGTGACACTGCAGCAGTAGCAGCAAGCAGCGGTCTGGACTACAGCTTTGACTCACCGCTCACTGAGgtaaaaaaaaacatgcgttCCCGTAGCAACAGCCTAGAGGACACAGCAAAGGCCAAGCTGGCTCAGCACCAGGCACGATCGCAGCGGCGGGCCACAGAACGTGAGGAGCCCCAGGGCAGGGGTGCAGGACGGGCCAGGCACAGGGAGCCCCCCGAtgacacaggcacaaacacaggTACTGTCCAGAGGAAGGAAAAGGAGGGCAGCGGCAGCAGTGGGAGTGGCAGTGCCAGCAGTAACAGTCGGAGGGAGAAGGCAGCAGGCGGGAAGACCAGGGACCTCTCCCGAGATGACCTTCTGTTCCTTCTCTCCATGCTAGAAGGAGAACTGCAGGCCAGAGACGAGGTGATCACGGTGTTGAAGGCTGAGAAGATTGACTTGTCCCTCTTGGAGGCCCAGTATGGGTTCGTTACCCCACAGAAGGTCCTCCAGGCCCTGCAGAGAGACACCGTCCAGAGCAAGGCTGAGACCTTCCAGGAGGACATCTACGAGAGGCCCATGGCTGAGCTGGACAAGCTggtggagaagcagagggagaCCCACCGTCGCATGCTGGAGCAGCTGCTGCTGACTGAGCAGTCCCACAAGCGCGCCCTGTACAAGCTGGACGACGAGAAGAGGAACCATGGAGACTTCATGAGGAAGAGTGACGAGTTCACCAACCTGCTGGAGCAGGAACGAGAAAGACTGAAGTTGCTCATTGACCAGGAAAAGGCCTATcaggaaaggaaagaggaggagaacaaCAAGAAGGTCAGCAGCCTAAAGGAGGAGCTGACCAAGCTGAAGTCGTTTGCGTTGATGGTCGTGGACGAGCAGCAGCGCCTCACAGAGCAATTGACCCAACAGACTGCTAAGGTCCAGGAACTGACTGCCAACGCCTCCCACACCCAGGAAGAGCTGAGCTCTGCTAATGCAAAGGTgcaagagggggaggagaaagttTTTCGCTTGGAGACAGAGCTAGGCGACCAATCCAGTCGCTTTCACCAGGAACAGGAGACCATGACAGCCAAACTGACCAGCGAGGATGCCCAGAACCGGCAGCTCAAGCAGAAACTGTCCACACTCAGCCGGCAGCTGGAtgaactggaggagaccaacaagACCCTCCGGAGGGCCGAGGACGAGCTCCAGGAGCTGAGGGACAAGATCAGCCGCGGGGAATGTGGCAACTCCAGCCTCATGGATGAGGTGGAGGAGTTACGGAAAAGGGTTCTGGAGATGGAGGGGAAGGACGAGGAGCTGGTCAGAATGGAGGACCAGTGCAGGGACCTCAACAAGAAGCTGGAGAAGGAAGCCAGCCAAAGCCGTAGCCTGAAGGCTGATGTGGACAAGCTGAACCACAGGATCATGGAGCTGGAGAAACTAGAGGATGCGTTCGGCAAGAGCAAACAGGAGTGCAACGCGCTAAAATGCAATCTGGACAAAGAGAGGACAGTGTCAAatgttctgtccagggagatgGACATCCTGAAAGCAAGGGTCAAAGAACTGGAGGCAGTGGAGGTTCAGCTGGAGAAGACAGAGCTTACACTAAAGGAAGACCTCACCAAGCTGAAGACGCTGACGGTCATGCTGGTGGATGAAAGGAAGACCATGGCGGAGAAACTGAAAGCGATGGAGGACAAGGACCATAACAGCACTGGCAAACTGCATGCTGAGCAGGACAAAGTCACAACAGTAACAGAGAAGCTTATCGAGGAGAGCAAGAAAGCCCTAAGGTCGAATGCTGAGCTTGAGGAGAAAATGTGTGGCGCCACCAAGGACAGGGATGAACTCAAGGCCAAGCTCCAAGCCGAGGAGGAAAAGAGCAACGACCTGCAGTCCAAAGTTACCATGATGAAGAAGAGGTTGCATTCACTGGAAGCTGCAGAGAGGGAATTCCTGAGGAACAAAGCCAAAGAGGAAAACATCAAGGAGCCCATCGCCAACCGCTCCCAACAAGAGGACTACAAAGTCAAAGACCTTACGCAGGAAGTTGAGCGCCTGAGGCGAAAACTTAAAGATATGAAGGTTGTCGAAGACGACTTGTTGAAGACTGAGGATGAGTTTGAGTCCATGGAGAAGAGATACTCCAGGGAACAAGAGCGAGCAAAGGCCTTGATGGAGGAGTTGGAAATATCCAGAAATGAGCTTTTAAAGTACCAACTGGCAGAGAAGCAAGAGTCCAACCAGGAGCACATCCTCTACAGGCGTCTGAAAGAGGAAGAGGCCAAGTCCAGTCATCTGACCCGAGAGGTGGCGGCCCTAAAAGAGAAGATCCATGAATATATGGGCACAGAGGAAAACATCTGTCGCATGAAAAACGATCACTCCACCTTGCAAAGAAAACTGACTCTGCAAGAGGTGAAAAATAAAGAACtggccagagagatggagacccTCAATCGGGAGCTGGAGCGATACCGTCGCTTCAGCAAAAGTCTCCGCCCAGGCATGAATGGCAGACGTTTCTCAGACTTACAGGTGTGCACCAAGGAGGTACAGACAGATCTAGCAGACCACCTTCGACCCAACTACAAGAGCATCGCCCCACTGGAGCGGGCCGTGGTGAACGGAAAACTGTACGAAGAGAGTGACTCTGAGGACGATCCAAACTACAACAATGAGCTGCCCCTCGCCCAATGTAACCCCTCCCTCTTCAACAATGTCAACAACCTCAACAACAACATCAGGAGAGTCCCCTTTCTCAAAACCAAAGAAAGCCACAACCAAGTCAATGGGAAAGTGCAGGTTCCCAGACAGAATGGGAACCATGTGCAGCAAGGAGACGTGTTTCTGACACACAGCCCCGGGCAACCACTGCACATCAAGGTAACCCCAGACCACGGGCATAACATGGCCATGCTAGAAATCACCAGCCCCACCGCAGAAAACACCCAGTCATACACCAGCACTGCAGTCATCCCCACAAGCGGAGGTCCACCCAAACAAAGAATCACCATAATTCAGAACGCATCCATCTCCCCGACTACCAGAAACAAAGCTCAAAGGTCCCCCTCGTCAGATGGTTCCCCCTGCACTCCTGATCGAGCCATATCTCCCTTCACCATGACCACCTACTCTAGAGCGATGACCCCAGACTCCTCTGGGTCGGTCACACCAGACAGGGCTATGTCACCCATCCAGATCGTGTCGGTCACAACAGGCACTCCTGACCGGTCCCTGTCCACGGAGCCAGTAGAGGTCATGGGAGGTCATGCAGTCTTCAGGGTGACACCAGAGAGGCAGAGCAGCTGGCAGGTTCAAAGGTCCAACAGCTCCGGCCCCAACGTCATCACCACGGAGGACAACAAAATCCACATTCACTTAGGGAGCCCCTTCATTCAGAGCTTAAACACTACACCCCAGCCTGTGAGCCCATGCTACTCACCTGGGCAGGAGCAGAGATCTCCTGTATTATCCAATGGTACCCCTGTCAAAGGCAACAGCAAAATCACAAGTAGCATCACTATAAAGCCAACATCCACCCCAATCAAAAAGCCTTCACAAATTACAATCCCCTTGGAAGCATTCCGACGCCCAGGTCCAACCAGGATCCCCAAACCTAAAGCCTACGGTACAAAAGGAACAAACAGTGCGGTCAATCCAGGGCAGAGCAATAAAGGACAGCCCCAGACAGCTCTCTCCTCAGAGAAGACGCTGCAGGGTACTCAGAGTGCAGCCAACAACCTAAATGTGGTCAACCGCCCCACTAGAATATAACATCACACACTTGGATGTATCATCACATTATGATCTCAATTATGATGTAGTCCTGTTGCTACAAAGACTTCTGCTTTTGTGTGCCTCGGTATTGATAATGAAAACACCAAAATAGGAAGATGAGTAGGACAAGGTTAACTAGCATATGTGTTTCACAAAGAAAAATTCACTGATCTGTCTGTGTAAGCAGCAGGGGCGCACATTTTCCTGGGGACGGGGGGGGGACATATCCCCAGTTTtataattggaatgtgatacaaaacgaggcaatggtgtactttaggaccatgtggacacctcggAGTGGTTGGGtaggaaaaataaaaaataaaatatatatatcatgtCCCCCCACCTCTAAAACTAAAGTTGCACCCCTGGTGAGCAGTAATTGCAATAATTTATCaattatgatatatatatatatatatatgggataTTAGGCTACTGTTCTTACTAATACCATTAAAATATGAATGTGTATTATCCCCTTGAAACATGAACTGTATTGCTATTTTAATGTGGTAGACCTATCTAATATACATCCACTACTTAATTAGTCTAATTCTGTGAGTGGCAAAAAAAAGGAATGCTATTAACAGTTTCAATAATGTACATGTGTATTATTGGTATTTTATGTTGAATGCTGAAGACTGAAATGTAATGATCAGACTATTAATTGGTTATCAATAAATATTGTTTTTATacctaca
>XM_021570761.2
CATGTTGATGATGTAATGCTCCATAGGCAGGGAGCATGCAGTGAGACATATCTTATTGTTTGGTCTCCCTGCTGGAATGTCCACATCACAGACCGCTGTGTGAgagctgagagacagagagagtacgGCAACATAATGAGCTTCAATCACTGAGGCTGCCACCAGACAGACCTATGGAACAGACTGAAGTTGCTCATTGACCAGGAAAAGGCCTATcaggaaaggaaagaggaggagaacaaCAAGAAGGTCAGCAGCCTAAAGGAGGAGCTGACCAAGCTGAAGTCGTTTGCGTTGATGGTCGTGGACGAGCAGCAGCGCCTCACAGAGCAATTGACCCAACAGACTGCTAAGGTCCAGGAACTGACTGCCAACGCCTCCCACACCCAGGAAGAGCTGAGCTCTGCTAATGCAAAGGTgcaagagggggaggagaaagttTTTCGCTTGGAGACAGAGCTAGGCGACCAATCCAGTCGCTTTCACCAGGAACAGGAGACCATGACAGCCAAACTGACCAGCGAGGATGCCCAGAACCGGCAGCTCAAGCAGAAACTGTCCACACTCAGCCGGCAGCTGGAtgaactggaggagaccaacaagACCCTCCGGAGGGCCGAGGACGAGCTCCAGGAGCTGAGGGACAAGATCAGCCGCGGGGAATGTGGCAACTCCAGCCTCATGGATGAGGTGGAGGAGTTACGGAAAAGGGTTCTGGAGATGGAGGGGAAGGACGAGGAGCTGGTCAGAATGGAGGACCAGTGCAGGGACCTCAACAAGAAGCTGGAGAAGGAAGCCAGCCAAAGCCGTAGCCTGAAGGCTGATGTGGACAAGCTGAACCACAGGATCATGGAGCTGGAGAAACTAGAGGATGCGTTCGGCAAGAGCAAACAGGAGTGCAACGCGCTAAAATGCAATCTGGACAAAGAGAGGACAGTGTCAAatgttctgtccagggagatgGACATCCTGAAAGCAAGGGTCAAAGAACTGGAGGCAGTGGAGGTTCAGCTGGAGAAGACAGAGCTTACACTAAAGGAAGACCTCACCAAGCTGAAGACGCTGACGGTCATGCTGGTGGATGAAAGGAAGACCATGGCGGAGAAACTGAAAGCGATGGAGGACAAGGACCATAACAGCACTGGCAAACTGCATGCTGAGCAGGACAAAGTCACAACAGTAACAGAGAAGCTTATCGAGGAGAGCAAGAAAGCCCTAAGGTCGAATGCTGAGCTTGAGGAGAAAATGTGTGGCGCCACCAAGGACAGGGATGAACTCAAGGCCAAGCTCCAAGCCGAGGAGGAAAAGAGCAACGACCTGCAGTCCAAAGTTACCATGATGAAGAAGAGGTTGCATTCACTGGAAGCTGCAGAGAGGGAATTCCTGAGGAACAAAGCCAAAGAGGAAAACATCAAGGAGCCCATCGCCAACCGCTCCCAACAAGAGGACTACAAAGTCAAAGACCTTACGCAGGAAGTTGAGCGCCTGAGGCGAAAACTTAAAGATATGAAGGTTGTCGAAGACGACTTGTTGAAGACTGAGGATGAGTTTGAGTCCATGGAGAAGAGATACTCCAGGGAACAAGAGCGAGCAAAGGCCTTGATGGAGGAGTTGGAAATATCCAGAAATGAGCTTTTAAAGTACCAACTGGCAGAGAAGCAAGAGTCCAACCAGGAGCACATCCTCTACAGGCGTCTGAAAGAGGAAGAGGCCAAGTCCAGTCATCTGACCCGAGAGGTGGCGGCCCTAAAAGAGAAGATCCATGAATATATGGGCACAGAGGAAAACATCTGTCGCATGAAAAACGATCACTCCACCTTGCAAAGAAAACTGACTCTGCAAGAGGTGAAAAATAAAGAACtggccagagagatggagacccTCAATCGGGAGCTGGAGCGATACCGTCGCTTCAGCAAAAGTCTCCGCCCAGGCATGAATGGCAGACGTTTCTCAGACTTACAGGTGTGCACCAAGGAGGTACAGACAGATCTAGCAGACCACCTTCGACCCAACTACAAGAGCATCGCCCCACTGGAGCGGGCCGTGGTGAACGGAAAACTGTACGAAGAGAGTGACTCTGAGGACGATCCAAACTACAACAATGAGCTGCCCCTCGCCCAATGTAACCCCTCCCTCTTCAACAATGTCAACAACCTCAACAACAACATCAGGAGAGTCCCCTTTCTCAAAACCAAAGAAAGCCACAACCAAGTCAATGGGAAAGTGCAGGTTCCCAGACAGAATGGGAACCATGTGCAGCAAGGAGACGTGTTTCTGACACACAGCCCCGGGCAACCACTGCACATCAAGGTAACCCCAGACCACGGGCATAACATGGCCATGCTAGAAATCACCAGCCCCACCGCAGAAAACACCCAGTCATACACCAGCACTGCAGTCATCCCCACAAGCGGAGGTCCACCCAAACAAAGAATCACCATAATTCAGAACGCATCCATCTCCCCGACTACCAGAAACAAAGCTCAAAGGTCCCCCTCGTCAGATGGTTCCCCCTGCACTCCTGATCGAGCCATATCTCCCTTCACCATGACCACCTACTCTAGAGCGATGACCCCAGACTCCTCTGGGTCGGTCACACCAGACAGGGCTATGTCACCCATCCAGATCGTGTCGGTCACAACAGGCACTCCTGACCGGTCCCTGTCCACGGAGCCAGTAGAGGTCATGGGAGGTCATGCAGTCTTCAGGGTGACACCAGAGAGGCAGAGCAGCTGGCAGGTTCAAAGGTCCAACAGCTCCGGCCCCAACGTCATCACCACGGAGGACAACAAAATCCACATTCACTTAGGGAGCCCCTTCATTCAGAGCTTAAACACTACACCCCAGCCTGTGAGCCCATGCTACTCACCTGGGCAGGAGCAGAGATCTCCTGTATTATCCAATGGTACCCCTGTCAAAGGCAACAGCAAAATCACAAGTAGCATCACTATAAAGCCAACATCCACCCCAATCAAAAAGCCTTCACAAATTACAATCCCCTTGGAAGCATTCCGACGCCCAGGTCCAACCAGGATCCCCAAACCTAAAGCCTACGGTACAAAAGGAACAAACAGTGCGGTCAATCCAGGGCAGAGCAATAAAGGACAGCCCCAGACAGCTCTCTCCTCAGAGAAGACGCTGCAGGGTACTCAGAGTGCAGCCAACAACCTAAATGTGGTCAACCGCCCCACTAGAATATAACATCACACACTTGGATGTATCATCACATTATGATCTCAATTATGATGTAGTCCTGTTGCTACAAAGACTTCTGCTTTTGTGTGCCTCGGTATTGATAATGAAAACACCAAAATAGGAAGATGAGTAGGACAAGGTTAACTAGCATATGTGTTTCACAAAGAAAAATTCACTGATCTGTCTGTGTAAGCAGCAGGGGCGCACATTTTCCTGGGGACGGGGGGGGGACATATCCCCAGTTTtataattggaatgtgatacaaaacgaggcaatggtgtactttaggaccatgtggacacctcggAGTGGTTGGGtaggaaaaataaaaaataaaatatatatatcatgtCCCCCCACCTCTAAAACTAAAGTTGCACCCCTGGTGAGCAGTAATTGCAATAATTTATCaattatgatatatatatatatatatatgggataTTAGGCTACTGTTCTTACTAATACCATTAAAATATGAATGTGTATTATCCCCTTGAAACATGAACTGTATTGCTATTTTAATGTGGTAGACCTATCTAATATACATCCACTACTTAATTAGTCTAATTCTGTGAGTGGCAAAAAAAAGGAATGCTATTAACAGTTTCAATAATGTACATGTGTATTATTGGTATTTTATGTTGAATGCTGAAGACTGAAATGTAATGATCAGACTATTAATTGGTTATCAATAAATATTGTTTTTATacctaca

Function

NR:

description
filamin A-interacting protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570760.2 False 4777 mRNA 0.51 6 13883956 13969189
XM_021570761.2 True 3917 mRNA 0.49 3 13957458 13969189

Neighbor

gene id symbol gene type direction distance location
LOC118941229 NA coding upstream 72668 13811236 ~ 13811288 (+)
LOC110495495 LOC106574775 coding upstream 261138 13592980 ~ 13622818 (+)
LOC110497006 LOC106574795 coding upstream 327604 13520158 ~ 13556352 (+)
LOC110495496 NA coding upstream 365880 13516342 ~ 13518076 (+)
trnaa-ugc-135 NA coding upstream 366920 13516962 ~ 13517036 (+)
LOC110495485 LOC106575653 coding downstream 5921 13975110 ~ 13979887 (+)
LOC110495483 LOC106575569 coding downstream 117869 14087058 ~ 14485956 (+)
LOC110495481 LOC106574739 coding downstream 587787 14556326 ~ 14558589 (+)
LOC110495476 LOC106575616 coding downstream 619462 14588651 ~ 14643860 (+)
LOC110495457 LOC106573985 coding downstream 784247 14753436 ~ 14764586 (+)
G1518557 LOC106575650 non-coding upstream 77263 13803381 ~ 13806693 (+)
G1518505 NA non-coding upstream 83995 13796612 ~ 13799961 (+)
G1518478 NA non-coding upstream 164554 13678094 ~ 13719402 (+)
G1518613 NA non-coding downstream 116 13969305 ~ 13969757 (+)
G1518614 NA non-coding downstream 1358 13970547 ~ 13970890 (+)
G1518612 NA non-coding downstream 2399 13971588 ~ 13972418 (+)
G1518993 NA non-coding downstream 3571 13972760 ~ 13972963 (+)
G1519100 NA non-coding downstream 131576 14100765 ~ 14104118 (+)
G1517545 NA other upstream 695876 13187101 ~ 13188080 (+)
G1517457 NA other upstream 941462 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 947678 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 1011793 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1942851 11940062 ~ 11941897 (+)
G1519096 NA other downstream 465573 14434762 ~ 14436120 (+)
G1519538 NA other downstream 529597 14498786 ~ 14499137 (+)
G1519733 NA other downstream 844793 14813982 ~ 14814886 (+)
il8r il8r other downstream 929067 14898154 ~ 14901354 (+)

Expression


Co-expression Network