LOC110495481 (LOC106574739)


Basic Information

Item Value
gene id LOC110495481
gene name LOC106574739
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14556326 ~ 14558589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951916.1
TCTGCTGGGCCTAAAGACACCCCAGCTTCAACACAATGCCCACTCTGCCCTCCTCCCCCCTTTCCACCTCTTtacccctgtcctcctcttccttccccctctccaatGCCACCTATCCCCcctttacctcctcctctccaaacCAGACCCTATGTAATCTAGATGACGGTGCCCTGCGCCTCCCCCTGGTCTTCTTCtactccctcttcttcctcctggGTCTGGTAGGTAATCTCCTGGCCCTGTGGGTCTTCGTCTTCCTCCACTCCAGGAGGAACTCTGTCCGGGTGTTCCTCATCAACGTGGCCATAGCTGACCTGGTGCTCCTGGCCTGCCTTCCCTTCAGAGTCCTCTACCATGCTAACGGCAACCGCTGGGTCCTCGGCCCCCTGGTCTGTAAAGTGGTGGGCAACCTCTTCTACATGAACATGTATATCAGTATCACTCTGCTGGGGTTCATTAGTCTGGATAGGTATGTGAAGCTGAAGGGGCGGGGCGGAGCGGGGAGGGGCCTGGCCAGGAGGCTGAGAGGTGGGGGATGGAGCTGGGTGGCGTGCAGGGCGCTCTGGGGGCTGTCCCTGGCGGCGGCCGTGCCCATGATCGCCATGTCGGAGGGAAACGAGGAACCTGGGAAGTGTTTCCAGTATAAGCAACGACGTGGGGCGAAGGGGAAGGCTTACTTCAACATGGCTCTGGTGCTGCTGTTCTGGGGGGTGCTCTGCCTGCTGGTGGTCTCCTATGGGAAGATAGCCATGCGCCTCCTCAAGGTGTCCAGGGATAAACCGGACCTCCCCAATGCCCACCGCTACGGTAGCGCCGCCAGGAAGTCCTTCTTCGTGCTATTCCTGTTCACCGTCTGCTTCGGGCCCTACCATGCCTTCCGCCCATTCTACGTCCTCTCCCAGCTCAGCCAATCCCCATCCTGCGATCACTTGCGCCTGGTGGACAGGACCaatgaggtcatgttgttgttctCCGCCTTCAACGCCGTCCTGGACCCTGTGATGTACTTCCTGTTGTCGGGCTCGGTGCGTAAGGCCGCCGTGAAAGCCCTCGGACAGAGCCTCGGCAACCAGCTCCACTTCCTTAACGACGGGACCTCCAACAGCTCGGTATCAGAGTTCAGACGGACCTCTCTGTCCGTTACCTCCcccaacactgtcattaaccccTCCCATGAGCCCAGGACCAGCCTCTGTCTGATTAGCCCCACCCTCCGCCCAGGCGCAGCCATAGTGCCAAAGCAGTGAATTTACAGACCTCATTGTTTAACTTCATGGACTTTAGCTCTATTTACATTATAATGTATACCATGTCCTCAACAACTGATGCATGTGACAAGGGACAATGTCTTGAACTAGACTCAGTTTCCAAGAATGGACCTGACCAGATGTCCTGAATCAAAGtgatacacactaccgttcaaaagtttggggtcacttagaaatgtccttgttctcgaaagaaaagcaattttctCAACGCAAAACCCCACTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAAC
>TU1739660
gaggaaagagagcgagagagtgagagaagggaggagagctCAGAGTAACAGACGAAAAGTGTGTAGGAGAGTAACCAGAGAAGTCCCAACACGATCCCACTGAACCTAACAACCAAGGGACAGTAGGACCAGGGGCTGTTAAAGGATATGTAACGACACACACATTCTGGACAGTGGACAGTCAAACTACAGCTGCAGAGTCTCTGACATGGAGGGAATCTGGATGCACTGAAGATCTGCTGGGCCTAAAGACACCCCAGCTTCAACACAATGCCCACTCTGCCCTCCTCCCCCCTTTCCACCTCTTtacccctgtcctcctcttccttccccctctccaatGCCACCTATCCCCcctttacctcctcctctccaaacCAGACCCTATGTAATCTAGATGACGGTGCCCTGCGCCTCCCCCTGGTCTTCTTCtactccctcttcttcctcctggGTCTGGTAGGTAATCTCCTGGCCCTGTGGGTCTTCGTCTTCCTCCACTCCAGGAGGAACTCTGTCCGGGTGTTCCTCATCAACGTGGCCATAGCTGACCTGGTGCTCCTGGCCTGCCTTCCCTTCAGAGTCCTCTACCATGCTAACGGCAAC
>TU1739661
gaggaaagagagcgagagagtgagagaagggaggagagctCAGAGTAACAGACGAAAAGTGTGTAGGAGAGTAACCAGAGAAGTCCCAACACGATCCCACTGAACCTAACAACCAAGGGACAGTAGGACCAGGGGCTGTTAAAGGATATGTAACGACACACACATTCTGGACAGTGGACAGTCAAACTACAGCTGCAGAGTCTCTGACATGGAGGGAATCTGGATGCACTGAAGATCTGCTGGGCCTAAAGACACCCCAGCTTCAACACAATGCCCACTCTGCCCTCCTCCCCCCTTTCCACCTCTTtacccctgtcctcctcttccttccccctctccaatGCCACCTATCCCCcctttacctcctcctctccaaacCAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951916.1 False 1614 mRNA 0.56 1 14556976 14558589
TU1739660 False 606 TUCP 0.54 2 14556326 14557346
TU1739661 True 383 lncRNA 0.53 2 14556326 14557123

Neighbor

gene id symbol gene type direction distance location
LOC110495483 LOC106575569 coding upstream 71020 14087058 ~ 14485956 (+)
LOC110495485 LOC106575653 coding upstream 577089 13975110 ~ 13979887 (+)
LOC110495487 LOC106574771 coding upstream 587787 13883956 ~ 13969189 (+)
LOC118941229 NA coding upstream 745688 13811236 ~ 13811288 (+)
LOC110495495 LOC106574775 coding upstream 934158 13592980 ~ 13622818 (+)
LOC110495476 LOC106575616 coding downstream 30062 14588651 ~ 14643860 (+)
LOC110495457 LOC106573985 coding downstream 194847 14753436 ~ 14764586 (+)
LOC110496915 LOC106575634 coding downstream 220501 14779090 ~ 14780827 (+)
zgc:92380 LOC106575639 coding downstream 234348 14792937 ~ 14799311 (+)
LOC110495453 il8r coding downstream 276805 14835394 ~ 14842885 (+)
G1519579 NA non-coding upstream 25139 14530073 ~ 14531837 (+)
G1519578 NA non-coding upstream 27266 14529089 ~ 14529710 (+)
G1519562 NA non-coding upstream 29184 14527578 ~ 14527792 (+)
G1519561 NA non-coding upstream 29968 14526738 ~ 14527008 (+)
G1519555 NA non-coding upstream 43548 14513032 ~ 14513428 (+)
G1519654 NA non-coding downstream 113650 14672239 ~ 14675705 (+)
G1519738 NA non-coding downstream 273570 14832159 ~ 14832358 (+)
G1519750 NA non-coding downstream 334863 14893452 ~ 14897145 (+)
G1519759 NA non-coding downstream 350902 14909491 ~ 14909694 (+)
G1519751 NA non-coding downstream 353007 14911596 ~ 14921517 (+)
G1519538 NA other upstream 57839 14498786 ~ 14499137 (+)
G1519096 NA other upstream 120856 14434762 ~ 14436120 (+)
G1517545 NA other upstream 1368896 13187101 ~ 13188080 (+)
G1517457 NA other upstream 1614482 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 1620698 12934654 ~ 12936278 (+)
G1519733 NA other downstream 255393 14813982 ~ 14814886 (+)
il8r il8r other downstream 339667 14898154 ~ 14901354 (+)
LOC110495440 LOC106575601 other downstream 650380 15207355 ~ 15251952 (+)
G1520649 NA other downstream 1197904 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 1237763 15796262 ~ 15801788 (+)

Expression


Co-expression Network