LOC110496915 (LOC106575634)


Basic Information

Item Value
gene id LOC110496915
gene name LOC106575634
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14779090 ~ 14780827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572929.2
ggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaatcaatttgatttgatttggtctctAGACCAGAGAGCATTTTGCGTTTACATTTACATGTCGGTCATTTAGCCaacattcttatccagagcgactaacAGGCAGTTTGTTTTTGAGCTCTGAATATATCATGCTCCATGACCTCTGGTCTCactgtattctgtctgtctgtcttcacccAGGCTTCCTGCAGTTTAATGGGAGCTGTGGAAGTCTCCGTAGCAGTGGGGGCAAAGGTCTGGCACGCTAAGGACAACTGTGGAGGAACACAACCACCGCAACCGCAGCCATGGATGACCTGGCTAATGACTCTGCTGTGCGGCCGCTGCTGTCGGAGGCACGTCTCATCTACGCCATCACCGTGCCCCTGTCCACCGCCATCATCCTGGCCAACCTGGTCATCATCCTGGGCATCTCCTGTAACCGTCAGCTCTACAACACCCCAAACTACTTCTTCCTGAGCCTGCTAGTGGCTGACCTGTGTACGGGCGTGGCCCTACCGTTCATCCCCTGGATGGGACTCAACCGTTCACTGAGTTTTAGCTCCTGTCTCCTGGTTCATATTTTTCCTAATTTCTTGTTCCTGGCGTTCCTGTTTAACCTGGTGATAGTTCATTATGAGAGATACATGTGCATCATGAGTCCGTTACATTATAGTAGCTTCTGGGTTCACCGCCACTTCCCGCTGGTGCTGCTCGCCGTGTGGGTGCCGCCACTGCTCTACGCCTCCCTGCCCGCCTTCGGCTGGAACAACCGGGCCGGCCCAGGGTGGAACGGCTGCTGCTCGTTTAACGACACGGGCACGCTGGGTGCGCCGGTGAACTGTTCCACCGTGGTGGTAGCGGCGCCGGGCGGCTCCGAGTGCTGTTCTTACAGACGGGTCTTCCCCAACGCCTTCATCTACCTTGAGGTGTACGGGCTGCTGGCGCCTGCCATCCTGTCCATCGCGGGCATGACGGGACGTGTGCTGTGGATCACCCGGGGCCAGATGAAGGACATCTGCCGGCTGCACCGCTCCGTGGCGACCAGGGGGGGCGGTCAGGCCTCGGAACGGGAGCAGCGGCTCAACCTCCGCTACACGCGGTGCGTGGCTGCCGTGTCGCTGACCTTCCTGGCCTGCTGGGTGCCCTACATCATCTACATACACGTCTCCGTGGTGTTTCTGCTCAGCAAGGAGACGCGCGGGAACTCCACCACACACATCGTGCTGTCGTGCACGGGGATCGGGAGCATGGCAGTGATgccgctggtcctggggctggccaACAGGCAGTACACGGACCCGGTGAGGAAACTCCTCCATAAACTCCGagacagatggaggaggagacaggattcTGAGGATATGGCTCTCTGAGTAGCTAGGACAGGACTGCTCTCACTTTGGGGATGGACGTGTGGGATTATAAATGGGGATTATAGCATATGGATGATGAAGCATCCTCTACTCCTGGATGAGGGCAGTGGCGCCCCGAGTCTGTGGACTCTAGCTGTAAGGGAGTAGCAGAAAGACCCCATTCGAGGTGCAGGACTGGTAGGGTTGCCCCACCTCTCCCATGTCTGTCAGTTTATAGTCACAGCATGTGTGACTCTTGCCATTGGGGCCATTGAGCGCGTTATGTTTAAATCCATCAGTATACATGTGTACACTACTTGGGTAGTCATAATAAATTCAAAACAAT

Function

NR:

description
G-protein coupled bile acid receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08400 GPBAR1; G protein-coupled bile acid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572929.2 True 1738 mRNA 0.55 1 14779090 14780827

Neighbor

gene id symbol gene type direction distance location
LOC110495457 LOC106573985 coding upstream 14504 14753436 ~ 14764586 (+)
LOC110495476 LOC106575616 coding upstream 135230 14588651 ~ 14643860 (+)
LOC110495481 LOC106574739 coding upstream 220501 14556326 ~ 14558589 (+)
LOC110495483 LOC106575569 coding upstream 293134 14087058 ~ 14485956 (+)
LOC110495485 LOC106575653 coding upstream 799203 13975110 ~ 13979887 (+)
zgc:92380 LOC106575639 coding downstream 12110 14792937 ~ 14799311 (+)
LOC110495453 il8r coding downstream 54567 14835394 ~ 14842885 (+)
LOC118941101 il8r coding downstream 77895 14858722 ~ 14861844 (+)
LOC118936566 il8r coding downstream 96865 14877692 ~ 14880867 (+)
il8r il8r coding downstream 117327 14898154 ~ 14901354 (+)
G1519654 NA non-coding upstream 103385 14672239 ~ 14675705 (+)
G1519579 NA non-coding upstream 247253 14530073 ~ 14531837 (+)
G1519578 NA non-coding upstream 249380 14529089 ~ 14529710 (+)
G1519562 NA non-coding upstream 251298 14527578 ~ 14527792 (+)
G1519738 NA non-coding downstream 51332 14832159 ~ 14832358 (+)
G1519750 NA non-coding downstream 112625 14893452 ~ 14897145 (+)
G1519759 NA non-coding downstream 128664 14909491 ~ 14909694 (+)
G1519751 NA non-coding downstream 130769 14911596 ~ 14921517 (+)
G1519752 NA non-coding downstream 137878 14918705 ~ 14919404 (+)
G1519538 NA other upstream 279953 14498786 ~ 14499137 (+)
G1519096 NA other upstream 342970 14434762 ~ 14436120 (+)
G1517545 NA other upstream 1591010 13187101 ~ 13188080 (+)
G1517457 NA other upstream 1836596 12937523 ~ 12942494 (+)
G1519733 NA other downstream 33155 14813982 ~ 14814886 (+)
LOC110495440 LOC106575601 other downstream 428142 15207355 ~ 15251952 (+)
G1520649 NA other downstream 975666 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 1015525 15796262 ~ 15801788 (+)

Expression


Co-expression Network