zgc:92380 (LOC106575639)


Basic Information

Item Value
gene id zgc:92380
gene name LOC106575639
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14792937 ~ 14799311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570724.2
AGGCACCTCTTCTCAGGTTATCACCCGATTTTAATGTGGGCAAGGACCAACCCTCCCCACTCAGGTGTCCGCCTCTGTCCAATCAGCTGAGGTGGAACTCTAAATTTCATAGTAAAAACAACAAAGTCACAAAGGAAAACTTGAATGTTTACTCTAAAGCTGTTTGCCCGGGGGTGTGCTGGACGTACTACAGCCAATCGTATCTTTGGGGCCGGTGTCAGGTGTTGAGCAGTGGTATAACAACAGCAGTCCCTCGCATCTCTCAATCACTACCTGTACAGGTGACTATCGGTTCCACACTGcctctctattttctttctcaaCTACTGCCATGTCTAGGAACAGTGCCTTCAGCATGTTCGGTGGGGCCGGGGGAAGAGGCTCCAGGGTGTCTGTGGCCAGTCTGGAGGGGCTACGGAACGCGATGCGCTCTGACCCGGAGAATTCGAAGGAGGTCTCTCCTGCCCCCGGGCCCGCCCCGGATGATAAGAAGACCATGAAGGGTCTCAACGACCGTCTGTCCGGCTACCTGGGCAGGGTGAGGAACCTAGAGGAAGCCAACAAAGATCTGCAGGACCAGATTCAGGACATCTTGGACAAGAGAGGAGACCCCAACGGCCGCGACTGGGATGTGGTTGAGAAACCATTGAATGACCTCAGGAAGAAGCTCCGTGACATGACCATGGATAATGCACGTTTGTTACTGCAAATGGACAACACCAAACTGGCCAATGATGACTTCAAAAACAAGCTGGACAACGAGAAGCAGGCCAGGAAGACTGTGGAGAAGGACCTGATTGGTCTGAAGAAGGTGATGGACGACATCAACCTGAACCGCATGCAGCTGGAGAGCCAGAtcgagtctgtgaaggaagagcTCGCCTTCCTCAAGAAGGACCATAAGGATGACGTTGATGAGCTGCGTAAGAAGATCAAGGACTCCAACGTCCTCGTGGAGTTTGACTCACAGGACAACAACCTGAGTGACACACTCAACAAGATCCGCTCCCAGTACGAGAAACTGGCCAAGAAGAACCTCAAGGATACCGACGACTGGTACCAGAGCAAGtttGACAGCATCAAGGTAGAGGTGGTTGAGAATAATGAGGCTCTGCATTCAGGCAAGAATGAGCTCAAAGACCTGCGCAGACAGAGACACCTTCTGGAGATAGACATACAGTCTACAATGAGCATGGTCCACTCCCACGAGGAATCTCTGAAGGACATGGATGGGCGGTACAACCGTGAGATGACTCGCCTCAATAAGATCCTGCTGCAGTTGGAGGGAGAGCTGGTCCAAGTGAGGACGCAGGTGGAGAGGCATGTGGATGACTACCAGGAGCTGCTTCACGTCAAGATGAAGCTGGAAGCCGAGATCGAGAACTACCGCAGCCTAATGCACGACATCGCCCCCGACGACAGCGTGGACTTTTCTTTAGAGCAGGCAGTGAATTGTGAGCCGCCCCAGCCACCTAAGAAAGCCTTGATGAAGGATGAGGTTGATGGAAAGGAGGTCCCCAAAAAGACAGAAGCTGCGGCAACTCAGAAAAGTTTCCCTCCAATCCAAGAGGCCCCCACAAAGAAGACCGAAGCCCCTGCAACTCAAGAGAGCCTCCCTAAAAAGACAGAGGCGTCTACAAAGGCAGCTAAGGCTAAGACACCAACAACCGAAGCAGGCACCAGCTGAGGATAAACCAAAGAAAGATTCCACCTCTTGTGTCTTCTTCCTCCTCCGATGCAGACAATAATGACCATAAAGAGAAACCCACAAATAAGTCTGCCCCCTGAATCCCCCTCCTCACCTCAACCCCGATCCCTCTAGTCTTTTCTCTTTGTGTTTTGAAGCCCAGCATCGTAACTAATGATGTTGTGTACAGTTTGAAGTAGATTTGGTGTTATTCCACTGCGTTCTTTCTCAGATGTTTCTCTACAAAATAAATACGTTCAACACATT
>XM_021570725.2
CACACTGcctctctattttctttctcaaCTACTGCCATGTCTAGGAACAGTGCCTTCAGCATGTTCGGTGGGGCCGGGGGAAGAGGCTCCAGGGTGTCTGTGGCCAGTCTGGAGGGGCTACGGAACGCGATGCGCTCTGACCCGGAGAATTCGAAGGAGGTCTCTCCTGCCCCCGGGCCCGCCCCGGATGATAAGAAGACCATGAAGGGTCTCAACGACCGTCTGTCCGGCTACCTGGGCAGGGTGAGGAACCTAGAGGAAGCCAACAAAGATCTGCAGGACCAGATTCAGGACATCTTGGACAAGAGAGGAGACCCCAACGGCCGCGACTGGGATGTGGTTGAGAAACCATTGAATGACCTCAGGAAGAAGCTCCGTGACATGACCATGGATAATGCACGTTTGTTACTGCAAATGGACAACACCAAACTGGCCAATGATGACTTCAAAAACAAGCTGGACAACGAGAAGCAGGCCAGGAAGACTGTGGAGAAGGACCTGATTGGTCTGAAGAAGGTGATGGACGACATCAACCTGAACCGCATGCAGCTGGAGAGCCAGAtcgagtctgtgaaggaagagcTCGCCTTCCTCAAGAAGGACCATAAGGATGACGTTGATGAGCTGCGTAAGAAGATCAAGGACTCCAACGTCCTCGTGGAGTTTGACTCACAGGACAACAACCTGAGTGACACACTCAACAAGATCCGCTCCCAGTACGAGAAACTGGCCAAGAAGAACCTCAAGGATACCGACGACTGGTACCAGAGCAAGtttGACAGCATCAAGGTAGAGGTGGTTGAGAATAATGAGGCTCTGCATTCAGGCAAGAATGAGCTCAAAGACCTGCGCAGACAGAGACACCTTCTGGAGATAGACATACAGTCTACAATGAGCATGGTCCACTCCCACGAGGAATCTCTGAAGGACATGGATGGGCGGTACAACCGTGAGATGACTCGCCTCAATAAGATCCTGCTGCAGTTGGAGGGAGAGCTGGTCCAAGTGAGGACGCAGGTGGAGAGGCATGTGGATGACTACCAGGAGCTGCTTCACGTCAAGATGAAGCTGGAAGCCGAGATCGAGAACTACCGCAGCCTAATGCACGACATCGCCCCCGACGACAGAGCCGCCCCAGCCACCTAAGAAAGCCTTGATGAAGGATGAGGTTGATGGAAAGGAGGTCCCCAAAAAGACAGAAGCTGCGGCAACTCAGAAAAGTTTCCCTCCAATCCAAGAGGCCCCCACAAAGAAGACCGAAGCCCCTGCAACTCAAGAGAGCCTCCCTAAAAAGACAGAGGCGTCTACAAAGGCAGCTAAGGCTAAGACACCAACAACCGAAGCAGGCACCAGCTGAGGATAAACCAAAGAAAGATTCCACCTCTTGTGTCTTCTTCCTCCTCCGATGCAGACAATAATGACCATAAAGAGAAACCCACAAATAAGTCTGCCCCCTGAATCCCCCTCCTCACCTCAACCCCGATCCCTCTAGTCTTTTCTCTTTGTGTTTTGAAGCCCAGCATCGTAACTAATGATGTTGTGTACAGTTTGAAGTAGATTTGGTGTTATTCCACTGCGTTCTTTCTCAGATGTTTCTCTACAAAATAAATACGTTCAACACATT

Function

NR:

description
keratin, type I cytoskeletal 18-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570724.2 False 1954 mRNA 0.51 8 14792937 14799311
XM_021570725.2 True 1624 mRNA 0.51 7 14793232 14799311

Neighbor

gene id symbol gene type direction distance location
LOC110496915 LOC106575634 coding upstream 12110 14779090 ~ 14780827 (+)
LOC110495457 LOC106573985 coding upstream 28351 14753436 ~ 14764586 (+)
LOC110495476 LOC106575616 coding upstream 149077 14588651 ~ 14643860 (+)
LOC110495481 LOC106574739 coding upstream 234348 14556326 ~ 14558589 (+)
LOC110495483 LOC106575569 coding upstream 306981 14087058 ~ 14485956 (+)
LOC110495453 il8r coding downstream 36083 14835394 ~ 14842885 (+)
LOC118941101 il8r coding downstream 59411 14858722 ~ 14861844 (+)
LOC118936566 il8r coding downstream 78381 14877692 ~ 14880867 (+)
il8r il8r coding downstream 98843 14898154 ~ 14901354 (+)
LOC110495438 tns1 coding downstream 108643 14907954 ~ 15133334 (+)
G1519654 NA non-coding upstream 117232 14672239 ~ 14675705 (+)
G1519579 NA non-coding upstream 261100 14530073 ~ 14531837 (+)
G1519578 NA non-coding upstream 263227 14529089 ~ 14529710 (+)
G1519562 NA non-coding upstream 265145 14527578 ~ 14527792 (+)
G1519738 NA non-coding downstream 32848 14832159 ~ 14832358 (+)
G1519750 NA non-coding downstream 94141 14893452 ~ 14897145 (+)
G1519759 NA non-coding downstream 110180 14909491 ~ 14909694 (+)
G1519751 NA non-coding downstream 112285 14911596 ~ 14921517 (+)
G1519752 NA non-coding downstream 119394 14918705 ~ 14919404 (+)
G1519538 NA other upstream 293800 14498786 ~ 14499137 (+)
G1519096 NA other upstream 356817 14434762 ~ 14436120 (+)
G1517545 NA other upstream 1604857 13187101 ~ 13188080 (+)
G1517457 NA other upstream 1850443 12937523 ~ 12942494 (+)
G1519733 NA other downstream 14671 14813982 ~ 14814886 (+)
LOC110495440 LOC106575601 other downstream 409658 15207355 ~ 15251952 (+)
G1520649 NA other downstream 957182 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 997041 15796262 ~ 15801788 (+)

Expression


Co-expression Network