LOC110495444 (LOC106575602)


Basic Information

Item Value
gene id LOC110495444
gene name LOC106575602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15256249 ~ 15266522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570686.2
TCTTTTGTCCTGCATGAATGTGTTTGGGGCCCCGACATGGATGCAGGGGTCACATGGTACCACGAAACGCCGAATGGGTTAAAAAAGAGGGGGTTGTAGTTTATGAAAGAGCGGCGGAGGAGAAAGAACAGTTGTTGATAGTTTGGAGAGGCTACGAGGGGAATTAAGGCTGAAAACAAGAAGGACAGTTTTGAGCCTTAAAGAGCTGAGAGGGCTCCTGGCCAGGTGTCTGCTGAGGCCTCATCATGAGCTGGAGCTTCCTGACGCGTCTCCTGGATGAGATCTCCAACCACAGCACGTTCGTGGGGAAGATCTGGCTGACTGTGCTCATCATCTTCCGCATCGTGCTGACGGCCGTGGGGGGCGAGACCATCTACTACGATGAACAGGCTAAGTTCGTCTGCAACACGCAGCAGCCCGGGTGTGAGAATGTCTGCTACGACGCCTTCGCTCCTCTCTCACACGTCCGCTTCTGGATCTTCCAGgtgATCCTGATCACCACCCCTACCATCATGTACTTGGGCTTTGCCATGCACAAGATCGCCCGCATGGACGATGTTGAGTACCGGCCTCTTCATCGTGCCGGGAAGAGGAGAATGCCCATCGTGACCCGGGGGACACAGCGGGATTACGAGGAGGCAGAGGACAATGGAGAGGAGGACCCCATGATCACTGAGGAGATCGAGGTGGAGAAGGACAAAGAGAAGGTGACAGAAGGCTCTGTGAAGAAGCACGACGGTCGGCGGCGGATCGCGCGTGACGGCCTGATGAAGGTGTACGTGTGTTCGCTGATCTCTCGCATCGCCTTCGAGGTGGCCTTCCTGTTAGGCCAGTATGTCCTCTACGGCTTCGAGGTGGCGCCCTTCTACGTGTGCACGCGCTCTCCCTGTCCGCATACGGTGGACTGCTTCGTCTCGCGGCCCACCGAGAAGACCATCTTCCTCCTGGTCATGTACGTGGTTTCTCTCCTCTGCACCACACTCACCCTCCTGGAGATTCTCCATCTCGGTGTCGGCGGAGTCCGCGACACCCTCCGCGGGCGCGCCAGACGCCACCCCACCCCAGCTCTTCCCCCTGTGGCCCGGGGGTCCCTCTGCAGTTCCCGCCATGGACCCACCGCCCCGCCAGGGTACCACACGGTCCTGGGGAAGAAGGACCCGTCTGGCAAGCTGAAGGCAGAGTTCAGAGATCCGTTGGCGGGGGACTATGGGAGGGAGAGCCTGGGGGACGAGGCGTCCAGCAGAGACCTGGAGAGGCTGAGGAAGCACCTGAAGATGGCCCAGCAGCACCTGGACTTGGCCTACCAGAACGAGGAGGGCCAGGGGTCCCCGTCACGGAGCAGCAGTCCTGAGAACAACACCACGGCTGCAGAGCAGAACAGACTCAACTTGGCTCAGGAGAAACAGGCGGCGGCCAGGGAGAAAGGAGTACATGCCTGAATCCTGCTTAATGCCTGCTCGACTGCCTGCCTGCTTTCTCTTCCCAACTGGCCCTCCACAGATGGGGAAGCACATGGGAACACAGCCAGACAGTGGAGAGACTGAAGAGTGTGGATGTGTGAGGGATGGAGGGCCTTGCAGTATTAAGGGCCAGGGACAACTTCAATTTAAAGCTGCCCAAGCTTCCGTAAAGCTACAGTACAAATCTCCTTAGCGTCTGACTCGTTCGACTTGAGTGCCTCCAAATACTTTGGTCTCAAGTTTCAGCTTGCCGAAACCCCACACCCTACTTTGGCAGTGCCTGTTGCTGAAGCACAGCCTTCTAGATGTAGTCGACACCCCGTTTTGGTTTGtccatttttgttttcattttttttcgcAGTCATTCTCTTCCAAAGTTTTCTCGGGTCAGTTTCTGTAGTCTGTCAGGTGACTGGGTCTCATCCAGTTTAAGCTTTAAtttaccccccttctctctactGACAAAGTTTACTAGTCGGTCCAATTTTAAGAGCGAGGCTCAACAAAGTCTTAAAAGCATTTACTGCACATGTTGTTATGCCAGGGCTTGTTGTTGCTGGATACAGAGTGAACCACAATGAACACTTGCCTGCGGGGGATGTCCTTTTGCACAGACATTAAGAGGATgtttgtgtgtccatgtatgtgtGTTGTATACAAGGTGGTGGGAGGTTTTCTGAAAGTGCAGTTCTTTAACGAGCACTTTTAACTTAATCTTGGACGTTAACCGTACTGCTTTTTTTCAGAGGATTAGTAATTAAAAATGAATTGTTTTGACATTCCATGAGACTCCACTCATTGTTAAAGCCTTGTATATTAGTCATTCCAACAAATTGGCCAAATGTGATAAATACCTGGGAAATGCTTGAATCCTGTGATGACTATAAATGTTCTTCCATGCTGTTTAAACACTCCTGTAGTCCTCCTGTACCTGTCATTTTGCTCCTGTCCTGGTTCCTTTTGTTCATGCTAGTCGGTGAGTTGTTTTGTTTAAACTTTATGTTTGTACTGGAATTCCAAGGAGGCAAATGCACCAACATTTGCTTATCTGTCATAATGTGATGGTTCTTTGAAATGGTTGAGCTGGAAACGATCGTGTTGTGCGCTGTGTTCAATTCATTTTTCCTTTCGTTTTTTAAAATTCggtacaaaaataacattctattTTTTTTCAGTGTTTGTAGTATTTTTGTTacattgttttgtagtttttgtAACTGTAGGGTTTAGTTTCATAGAAATACATGAATAAATATATTTGAACAGAA

Function

NR:

description
gap junction gamma-1 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570686.2 True 2728 mRNA 0.51 5 15256249 15266522

Neighbor

gene id symbol gene type direction distance location
LOC110495440 LOC106575601 coding upstream 4297 15207355 ~ 15251952 (+)
LOC110495435 LOC100194500 coding upstream 69904 15176401 ~ 15186345 (+)
LOC110495438 tns1 coding upstream 122915 14907954 ~ 15133334 (+)
il8r il8r coding upstream 354895 14898154 ~ 14901354 (+)
LOC118936566 il8r coding upstream 375382 14877692 ~ 14880867 (+)
LOC110496998 LOC106592612 coding downstream 10051 15276573 ~ 15332387 (+)
LOC110495449 LOC106574744 coding downstream 66863 15333385 ~ 15344802 (+)
LOC110495439 LOC106574706 coding downstream 152539 15419061 ~ 15490199 (+)
LOC110495446 LOC106575524 coding downstream 236492 15503014 ~ 15536810 (+)
LOC110495448 LOC106575529 coding downstream 288337 15554859 ~ 15563239 (+)
G1519875 NA non-coding upstream 1414 15254286 ~ 15254835 (+)
G1519917 NA non-coding upstream 5590 15250085 ~ 15250659 (+)
G1519916 NA non-coding upstream 6304 15249657 ~ 15249945 (+)
G1519915 NA non-coding upstream 6650 15249035 ~ 15249599 (+)
G1519925 NA non-coding downstream 2999 15269521 ~ 15269819 (+)
G1519929 NA non-coding downstream 20286 15286808 ~ 15287029 (+)
G1519932 NA non-coding downstream 26788 15293310 ~ 15293611 (+)
G1519937 NA non-coding downstream 48815 15315337 ~ 15315549 (+)
G1519940 NA non-coding downstream 80886 15347408 ~ 15348810 (+)
G1519733 NA other upstream 441363 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 698903 14556326 ~ 14558589 (+)
G1519538 NA other upstream 757112 14498786 ~ 14499137 (+)
G1520649 NA other downstream 489971 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 529830 15796262 ~ 15801788 (+)
G1520742 NA other downstream 652635 15919157 ~ 15922899 (+)
G1520748 NA other downstream 671708 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 1198991 16454118 ~ 16468453 (+)

Expression


Co-expression Network